Wall clock time and date at job start Wed Apr 1 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38376 * 119.92777 * 2 1 4 4 C 1.38335 * 120.29251 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14744 * 0.28022 * 4 3 2 6 6 C 1.39560 * 119.84653 * 359.50983 * 5 4 3 7 7 C 1.47847 * 120.14072 * 180.25696 * 6 5 4 8 8 O 1.21554 * 119.99983 * 180.21092 * 7 6 5 9 9 N 1.34776 * 120.00511 * 0.20606 * 7 6 5 10 10 N 1.40096 * 120.00410 * 180.02562 * 9 7 6 11 11 C 1.34775 * 119.99830 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00357 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99667 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47008 * 187.58852 * 13 11 10 15 15 C 1.46906 * 111.00317 * 211.24621 * 14 13 11 16 16 C 1.50690 * 109.47245 * 164.21511 * 15 14 13 17 17 H 1.08001 * 120.00497 * 4.95168 * 16 15 14 18 18 C 1.37880 * 119.99834 * 184.94703 * 16 15 14 19 19 N 1.31517 * 119.99720 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00171 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47224 * 89.99732 * 20 18 16 22 22 H 1.48505 * 109.47297 * 210.00096 * 20 18 16 23 23 H 1.48505 * 109.47100 * 329.99624 * 20 18 16 24 24 C 1.46904 * 111.00107 * 87.29354 * 14 13 11 25 25 C 1.53000 * 109.47180 * 282.12544 * 24 14 13 26 26 C 1.52998 * 109.46960 * 173.92955 * 25 24 14 27 27 C 1.52995 * 109.47106 * 293.92784 * 25 24 14 28 28 C 1.37937 * 119.92706 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47331 * 89.99956 * 1 2 3 30 30 H 1.08997 * 109.46930 * 210.00247 * 1 2 3 31 31 H 1.09008 * 109.46804 * 329.99712 * 1 2 3 32 32 H 1.08007 * 119.85565 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.92659 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.07828 * 179.72053 * 5 4 3 35 35 H 0.97001 * 119.99602 * 0.02562 * 9 7 6 36 36 H 0.97001 * 119.99987 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.47304 * 307.58865 * 13 11 10 38 38 H 1.08999 * 109.47450 * 67.58739 * 13 11 10 39 39 H 1.09005 * 109.47061 * 284.22073 * 15 14 13 40 40 H 1.09003 * 109.46715 * 44.21761 * 15 14 13 41 41 H 0.97003 * 119.99658 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46923 * 42.12562 * 24 14 13 43 43 H 1.09004 * 109.47141 * 162.12359 * 24 14 13 44 44 H 1.08999 * 109.46680 * 53.92712 * 25 24 14 45 45 H 1.08993 * 109.47449 * 59.99912 * 26 25 24 46 46 H 1.08995 * 109.46897 * 180.02562 * 26 25 24 47 47 H 1.09011 * 109.47140 * 299.99891 * 26 25 24 48 48 H 1.09000 * 109.47157 * 301.73536 * 27 25 24 49 49 H 1.09001 * 109.46977 * 61.73465 * 27 25 24 50 50 H 1.08994 * 109.47045 * 181.73774 * 27 25 24 51 51 H 1.08000 * 120.06948 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2813 0.0193 -0.0048 6 6 3.5911 -1.1936 -0.0003 7 6 4.3352 -2.4712 -0.0002 8 8 3.7315 -3.5262 -0.0002 9 7 5.6830 -2.4662 -0.0002 10 7 6.3881 -3.6767 -0.0007 11 6 7.7358 -3.6716 -0.0002 12 8 8.3382 -2.6190 0.0002 13 6 8.4943 -4.9738 -0.0012 14 7 9.9269 -4.7062 0.1825 15 6 10.7435 -5.7124 -0.5095 16 6 12.1592 -5.2112 -0.6342 17 1 12.4449 -4.2790 -0.1697 18 6 13.0897 -5.9429 -1.3412 19 7 14.3253 -5.5057 -1.4496 20 14 12.5954 -7.5549 -2.1451 21 1 12.1181 -7.2931 -3.5267 22 1 13.7678 -8.4653 -2.1905 23 1 11.5074 -8.1878 -1.3571 24 6 10.2713 -4.6392 1.6090 25 6 9.8430 -3.2834 2.1740 26 6 10.0624 -3.2695 3.6881 27 6 10.6767 -2.1752 1.5277 28 6 2.1952 -1.1954 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6539 2.1326 0.0004 33 1 4.1136 2.1475 0.0001 34 1 5.3612 0.0275 -0.0089 35 1 6.1648 -1.6243 0.0001 36 1 5.9063 -4.5186 -0.0014 37 1 8.1351 -5.6041 0.8123 38 1 8.3389 -5.4840 -0.9518 39 1 10.7358 -6.6414 0.0608 40 1 10.3330 -5.8926 -1.5030 41 1 14.9799 -6.0202 -1.9474 42 1 9.7553 -5.4357 2.1451 43 1 11.3481 -4.7590 1.7289 44 1 8.7876 -3.1169 1.9581 45 1 11.1177 -3.4360 3.9039 46 1 9.7568 -2.3038 4.0906 47 1 9.4684 -4.0591 4.1486 48 1 11.7343 -2.3586 1.7174 49 1 10.4968 -2.1652 0.4527 50 1 10.3930 -1.2124 1.9526 51 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777588671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:45 Heat of formation + Delta-G solvation = -29.872286 kcal Electronic energy + Delta-G solvation = -30394.908001 eV Core-core repulsion = 26294.765861 eV Total energy + Delta-G solvation = -4100.142140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.71497 -40.73586 -39.51793 -38.43316 -36.36451 -35.60678 -34.46193 -34.14887 -32.70720 -31.81558 -30.21475 -28.28871 -27.83704 -27.70969 -25.90064 -24.88322 -22.93948 -22.68726 -22.23222 -21.41518 -20.67120 -19.17230 -18.96503 -18.58127 -17.60800 -17.39904 -16.85909 -16.44334 -16.36915 -16.21729 -15.83320 -15.75559 -15.33839 -15.29666 -15.11943 -14.82187 -14.56083 -14.43541 -14.26120 -14.03515 -13.86883 -13.58267 -13.11161 -13.06686 -12.95131 -12.86160 -12.72108 -12.59602 -12.50342 -12.41690 -12.34571 -12.04168 -11.92808 -11.63189 -11.52522 -11.45959 -11.39794 -11.16741 -10.90890 -10.73047 -10.05804 -9.74073 -9.40661 -8.97494 -8.22538 -6.25173 -0.24738 0.34880 0.69688 1.38422 1.39836 1.44416 1.49883 1.80399 2.38308 2.78701 2.79713 3.09688 3.24572 3.47498 3.78214 3.89515 3.92587 4.03738 4.14780 4.16616 4.28204 4.32772 4.36859 4.37303 4.44232 4.61462 4.63944 4.77338 4.84423 4.87415 4.87597 4.89416 4.97094 5.03851 5.05823 5.14776 5.22476 5.23296 5.26354 5.34001 5.39249 5.48230 5.55264 5.57089 5.61648 5.68492 5.80884 5.91793 6.01668 6.32343 6.48030 6.67068 6.80454 6.82769 7.33391 7.37170 8.94390 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.002170 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.870871 B =12901.231488 C =13610.730795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.089 4.089 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.143 4.143 7 C 0.560 3.440 8 O -0.572 6.572 9 N -0.512 5.512 10 N -0.525 5.525 11 C 0.517 3.483 12 O -0.529 6.529 13 C 0.040 3.960 14 N -0.526 5.526 15 C 0.175 3.825 16 C -0.508 4.508 17 H 0.035 0.965 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.242 1.242 24 C 0.069 3.931 25 C -0.080 4.080 26 C -0.142 4.142 27 C -0.115 4.115 28 C -0.073 4.073 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.435 0.565 36 H 0.436 0.564 37 H 0.096 0.904 38 H 0.118 0.882 39 H -0.001 1.001 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.020 0.980 49 H 0.052 0.948 50 H 0.045 0.955 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.131 10.690 5.754 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.139 4.139 5 C -0.115 4.115 6 C -0.147 4.147 7 C 0.349 3.651 8 O -0.451 6.451 9 N -0.259 5.259 10 N -0.276 5.276 11 C 0.303 3.697 12 O -0.402 6.402 13 C -0.093 4.093 14 N -0.250 5.250 15 C 0.048 3.952 16 C -0.547 4.547 17 H 0.053 0.947 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.772 3.228 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.165 1.165 24 C -0.059 4.059 25 C -0.099 4.099 26 C -0.200 4.200 27 C -0.173 4.173 28 C -0.092 4.092 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.154 0.846 35 H 0.279 0.721 36 H 0.279 0.721 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.017 0.983 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.787 11.104 5.476 31.337 hybrid contribution 0.695 -1.457 -0.278 1.638 sum -28.092 9.647 5.197 30.154 Atomic orbital electron populations 1.20872 0.88836 1.04005 1.03411 1.20217 0.97869 0.92286 0.99501 1.21696 0.94408 0.98608 0.95948 1.21469 0.94707 0.98510 0.99249 1.21539 1.00586 0.91796 0.97576 1.19572 0.94493 0.91279 1.09347 1.18734 0.79992 0.90254 0.76122 1.90761 1.68454 1.33420 1.52475 1.44788 1.04127 1.01976 1.75049 1.45049 1.04061 1.00967 1.77543 1.21317 0.79583 0.93154 0.75638 1.90721 1.67651 1.33509 1.48347 1.22032 0.89347 0.92348 1.05532 1.61187 1.01489 1.49845 1.12483 1.20016 0.91974 0.89356 0.93808 1.21253 0.93961 1.07087 1.32400 0.94659 1.25883 0.94649 1.01902 0.96943 1.70074 1.04488 1.41014 1.43688 0.85705 0.78559 0.79015 0.79539 1.19349 1.21327 1.16532 1.22216 1.00418 0.96635 0.86584 1.21081 1.00046 0.94241 0.94536 1.21812 1.01483 1.02031 0.94645 1.21471 0.97251 0.97067 1.01494 1.21208 0.92104 0.99244 0.96625 0.90129 0.91235 0.89563 0.82563 0.82628 0.84614 0.72099 0.72107 0.88633 0.86395 0.98299 0.94727 0.92676 0.93842 0.92910 0.91242 0.93441 0.91940 0.91882 0.96067 0.92936 0.93598 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.24 0.71 -0.14 16 2 C -0.10 -1.23 5.87 -19.90 -0.12 -1.35 16 3 C -0.09 -0.87 9.69 22.33 0.22 -0.65 16 4 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 5 C -0.10 -1.43 9.54 22.53 0.21 -1.21 16 6 C -0.14 -2.74 5.87 -20.09 -0.12 -2.86 16 7 C 0.56 13.26 7.89 86.79 0.68 13.95 16 8 O -0.57 -16.57 16.19 -3.89 -0.06 -16.63 16 9 N -0.51 -11.67 6.21 -175.60 -1.09 -12.76 16 10 N -0.52 -12.43 6.26 -173.54 -1.09 -13.52 16 11 C 0.52 14.80 6.57 87.66 0.58 15.38 16 12 O -0.53 -18.57 12.00 -3.02 -0.04 -18.60 16 13 C 0.04 1.15 5.56 85.56 0.48 1.63 16 14 N -0.53 -20.64 3.43 -905.34 -3.10 -23.75 16 15 C 0.17 7.92 3.74 85.55 0.32 8.24 16 16 C -0.51 -29.10 8.96 25.60 0.23 -28.87 16 17 H 0.04 2.30 7.80 -2.91 -0.02 2.28 16 18 C 0.00 0.16 5.47 84.66 0.46 0.62 16 19 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 20 Si 0.95 43.16 27.37 68.60 1.88 45.03 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.24 -9.89 6.69 99.48 0.67 -9.23 16 24 C 0.07 2.56 4.18 86.30 0.36 2.92 16 25 C -0.08 -2.67 2.39 -10.80 -0.03 -2.69 16 26 C -0.14 -3.87 9.19 71.98 0.66 -3.20 16 27 C -0.12 -4.42 8.45 71.98 0.61 -3.82 16 28 C -0.07 -1.27 9.24 22.52 0.21 -1.07 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.09 0.35 8.08 -2.38 -0.02 0.33 16 32 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.14 1.71 6.41 -2.91 -0.02 1.69 16 35 H 0.43 9.14 6.04 -213.32 -1.29 7.86 16 36 H 0.44 9.01 8.00 -213.32 -1.71 7.30 16 37 H 0.10 2.15 7.48 -2.39 -0.02 2.13 16 38 H 0.12 3.00 7.45 -2.39 -0.02 2.98 16 39 H 0.00 -0.03 7.46 -2.38 -0.02 -0.05 16 40 H 0.03 1.50 6.77 -2.39 -0.02 1.49 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 43 H 0.05 2.34 6.95 -2.38 -0.02 2.32 16 44 H 0.07 2.26 5.07 -2.39 -0.01 2.25 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 2.33 6.37 -2.39 -0.02 2.32 16 50 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.13 2.37 7.65 -2.91 -0.02 2.35 16 Total: -1.00 -76.59 409.44 0.41 -76.18 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -2.08 Total: 27.91 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.70 Total: -4.21 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -4.98 Total: -109.68 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.10 Total: -35.24 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.03 kcal Total: -76.59 0.41 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777588671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.311 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds