Wall clock time and date at job start Wed Apr 1 2020 04:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38032 * 119.99987 * 2 1 4 4 C 1.38206 * 120.22663 * 180.25480 * 3 2 1 5 5 C 1.39023 * 120.22027 * 359.48605 * 4 3 2 6 6 N 1.39705 * 120.00286 * 180.23505 * 5 4 3 7 7 C 1.46496 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.50700 * 109.47520 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99564 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00457 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00037 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46676 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00410 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99486 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00304 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47054 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47195 * 119.99625 * 16 14 12 19 19 H 1.48494 * 109.47091 * 239.99998 * 16 14 12 20 20 C 1.38642 * 119.99254 * 0.25756 * 5 4 3 21 21 C 1.39491 * 119.77278 * 359.97438 * 20 5 4 22 22 C 1.47867 * 120.11000 * 180.02562 * 21 20 5 23 23 O 1.21545 * 119.99878 * 129.94873 * 22 21 20 24 24 N 1.34778 * 119.99693 * 309.95289 * 22 21 20 25 25 C 1.46500 * 120.00343 * 4.46976 * 24 22 21 26 26 C 1.46498 * 119.99624 * 184.47116 * 24 22 21 27 27 C 1.53002 * 109.47138 * 119.99726 * 26 24 22 28 28 C 1.52996 * 109.47289 * 239.99932 * 26 24 22 29 29 H 1.08996 * 109.47430 * 264.79640 * 1 2 3 30 30 H 1.09002 * 109.46757 * 24.79202 * 1 2 3 31 31 H 1.08992 * 109.47174 * 144.79184 * 1 2 3 32 32 H 1.07997 * 119.88158 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.88443 * 179.76873 * 4 3 2 34 34 H 0.97005 * 120.00141 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47185 * 300.00292 * 7 6 5 36 36 H 1.08997 * 109.46951 * 60.00494 * 7 6 5 37 37 H 0.97001 * 119.99462 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47313 * 300.00249 * 11 10 8 39 39 H 1.08997 * 109.46841 * 60.00462 * 11 10 8 40 40 H 0.96996 * 119.99463 * 180.02562 * 15 14 12 41 41 H 1.07998 * 120.11469 * 179.97438 * 20 5 4 42 42 H 1.09003 * 109.46757 * 93.20367 * 25 24 22 43 43 H 1.08993 * 109.46847 * 213.19838 * 25 24 22 44 44 H 1.08998 * 109.47175 * 333.20112 * 25 24 22 45 45 H 1.09002 * 109.47175 * 0.02562 * 26 24 22 46 46 H 1.09002 * 109.46821 * 60.00110 * 27 26 24 47 47 H 1.09003 * 109.46994 * 180.02562 * 27 26 24 48 48 H 1.09002 * 109.47398 * 300.00240 * 27 26 24 49 49 H 1.09003 * 109.47353 * 179.97438 * 28 26 24 50 50 H 1.09002 * 109.47111 * 300.00160 * 28 26 24 51 51 H 1.08997 * 109.47193 * 60.00495 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1954 0.0000 4 6 3.5791 1.2009 -0.0053 5 6 4.2837 0.0024 0.0001 6 7 5.6807 0.0132 -0.0004 7 6 6.4033 1.2876 -0.0071 8 6 7.8870 1.0238 -0.0068 9 8 8.3002 -0.1165 -0.0019 10 7 8.7549 2.0549 -0.0129 11 6 10.1973 1.7984 -0.0120 12 6 10.9405 3.1093 -0.0191 13 1 10.3933 4.0403 -0.0233 14 6 12.3193 3.1200 -0.0201 15 7 12.9857 1.9862 -0.0145 16 14 13.2407 4.7449 -0.0281 17 1 12.2670 5.8661 -0.0331 18 1 14.0947 4.8358 1.1834 19 1 14.0929 4.8247 -1.2415 20 6 3.5997 -1.2036 0.0054 21 6 2.2048 -1.2088 0.0059 22 6 1.4678 -2.4907 0.0122 23 8 0.5792 -2.6768 0.8203 24 7 1.7815 -3.4526 -0.8782 25 6 2.9156 -3.2680 -1.7871 26 6 0.9883 -4.6829 -0.9371 27 6 0.3725 -4.8264 -2.3304 28 6 1.8901 -5.8854 -0.6518 29 1 -0.3634 -0.0932 1.0234 30 1 -0.3633 0.9330 -0.4309 31 1 -0.3633 -0.8396 -0.5925 32 1 1.6552 2.1296 0.0004 33 1 4.1135 2.1393 -0.0091 34 1 6.1722 -0.8230 0.0030 35 1 6.1353 1.8526 -0.8999 36 1 6.1359 1.8615 0.8801 37 1 8.4244 2.9669 -0.0172 38 1 10.4654 1.2338 0.8810 39 1 10.4646 1.2239 -0.8990 40 1 13.9556 1.9938 -0.0148 41 1 4.1450 -2.1358 0.0092 42 1 3.8098 -3.7086 -1.3463 43 1 2.7017 -3.7550 -2.7384 44 1 3.0789 -2.2031 -1.9526 45 1 0.1939 -4.6391 -0.1920 46 1 1.1666 -4.8700 -3.0758 47 1 -0.2181 -5.7416 -2.3741 48 1 -0.2700 -3.9697 -2.5338 49 1 1.2999 -6.8007 -0.6952 50 1 2.6842 -5.9290 -1.3972 51 1 2.3287 -5.7832 0.3408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783239474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:29 Heat of formation + Delta-G solvation = -51.508079 kcal Electronic energy + Delta-G solvation = -29782.586209 eV Core-core repulsion = 25681.505871 eV Total energy + Delta-G solvation = -4101.080338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81031 -39.45851 -38.68608 -36.77014 -35.56764 -34.33647 -33.15692 -32.48642 -31.60405 -30.78376 -28.61242 -27.59980 -27.31805 -26.86901 -25.10105 -24.21140 -22.57420 -22.26267 -20.75582 -19.95555 -19.26010 -18.01664 -17.61759 -16.80077 -16.31625 -16.07764 -15.72718 -15.46085 -15.40319 -15.14575 -14.85551 -14.50906 -14.37866 -14.06019 -13.85174 -13.79685 -13.61179 -13.36745 -13.32003 -13.10588 -12.77184 -12.76052 -12.46108 -12.38820 -12.26279 -12.10724 -12.06798 -11.70779 -11.69271 -11.64164 -11.38684 -11.18097 -11.04357 -10.98169 -10.41089 -10.05398 -9.96079 -9.49213 -9.34643 -9.05080 -8.96734 -8.85130 -8.07593 -7.43324 -6.25484 -4.33083 0.91119 1.41059 2.51951 2.70395 3.08886 3.18137 3.19577 3.26200 3.28875 3.67548 3.98915 4.22968 4.28635 4.56153 4.68479 4.69237 4.80272 4.87911 4.91921 5.02712 5.11079 5.13599 5.18342 5.18992 5.19967 5.24486 5.32895 5.36901 5.39354 5.45990 5.48142 5.55122 5.57065 5.59782 5.73429 5.82283 5.84889 5.91611 6.07416 6.21054 6.27010 6.45176 6.60294 7.07734 7.10357 7.19609 7.25161 7.38369 7.54497 7.70042 7.86136 7.92065 8.42547 8.63037 8.87769 9.33743 10.84653 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.001790 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.411256 B =15641.959726 C =16796.860969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.074 4.074 4 C -0.177 4.177 5 C 0.217 3.783 6 N -0.730 5.730 7 C 0.103 3.897 8 C 0.493 3.507 9 O -0.553 6.553 10 N -0.705 5.705 11 C 0.249 3.751 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.165 4.165 21 C -0.082 4.082 22 C 0.566 3.434 23 O -0.533 6.533 24 N -0.607 5.607 25 C 0.070 3.930 26 C 0.129 3.871 27 C -0.162 4.162 28 C -0.161 4.161 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.412 0.588 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.393 0.607 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.879 -7.835 -4.521 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.092 4.092 4 C -0.200 4.200 5 C 0.113 3.887 6 N -0.362 5.362 7 C -0.026 4.026 8 C 0.277 3.723 9 O -0.433 6.433 10 N -0.353 5.353 11 C 0.129 3.871 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.188 4.188 21 C -0.086 4.086 22 C 0.355 3.645 23 O -0.410 6.410 24 N -0.340 5.340 25 C -0.073 4.073 26 C 0.027 3.973 27 C -0.220 4.220 28 C -0.219 4.219 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.702 -8.652 -4.097 27.427 hybrid contribution 0.967 0.968 -0.060 1.369 sum -24.735 -7.685 -4.157 26.233 Atomic orbital electron populations 1.20655 0.90944 1.01699 1.02626 1.19560 0.95958 0.91405 1.03603 1.20710 0.93312 0.97126 0.98085 1.20836 0.94304 0.96661 1.08184 1.17631 0.83458 0.93530 0.94110 1.44435 1.01994 1.08436 1.81302 1.21127 0.90841 0.87512 1.03090 1.20325 0.87869 0.86170 0.77960 1.90659 1.79446 1.21814 1.51369 1.46422 1.09422 1.07920 1.71559 1.19168 0.72716 0.97330 0.97916 1.21243 0.91685 0.91996 1.53481 0.91712 1.24964 0.97463 0.97031 0.94566 1.69979 1.07882 1.25602 1.48709 0.86337 0.79729 0.82895 0.77815 1.19586 1.20743 1.20753 1.20652 0.92632 0.96918 1.08618 1.19328 0.92864 0.92567 1.03830 1.18472 0.82533 0.83322 0.80184 1.90758 1.31885 1.80467 1.37933 1.47865 1.31768 1.17786 1.36582 1.22010 0.88223 1.03563 0.93493 1.21084 0.94262 0.83347 0.98644 1.22150 1.01041 1.02398 0.96363 1.22135 1.00120 0.97332 1.02338 0.90988 0.92044 0.92290 0.85546 0.85545 0.74935 0.89530 0.89555 0.77367 0.95357 0.95342 0.92403 0.85541 0.92304 0.91108 0.89803 0.88093 0.92132 0.91305 0.92244 0.91386 0.92177 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 8.88 36.00 0.32 -0.68 16 2 C -0.10 -1.12 5.91 -104.20 -0.62 -1.74 16 3 C -0.07 -0.72 9.66 -39.67 -0.38 -1.10 16 4 C -0.18 -1.83 9.31 -39.30 -0.37 -2.20 16 5 C 0.22 2.51 6.65 -83.83 -0.56 1.95 16 6 N -0.73 -9.21 5.70 -59.84 -0.34 -9.55 16 7 C 0.10 1.28 5.39 -5.20 -0.03 1.25 16 8 C 0.49 8.81 7.90 -10.99 -0.09 8.72 16 9 O -0.55 -12.09 15.67 5.55 0.09 -12.00 16 10 N -0.71 -13.56 5.55 -61.47 -0.34 -13.90 16 11 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 12 C -0.55 -14.23 9.28 -34.44 -0.32 -14.55 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.88 -25.38 13.29 55.43 0.74 -24.64 16 16 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.16 -1.85 7.48 -38.97 -0.29 -2.14 16 21 C -0.08 -0.96 4.86 -104.99 -0.51 -1.47 16 22 C 0.57 6.87 6.30 -12.32 -0.08 6.79 16 23 O -0.53 -7.95 15.20 5.33 0.08 -7.87 16 24 N -0.61 -5.71 2.76 -175.04 -0.48 -6.20 16 25 C 0.07 0.52 8.19 59.85 0.49 1.01 16 26 C 0.13 1.05 3.25 -67.93 -0.22 0.83 16 27 C -0.16 -0.99 9.17 37.16 0.34 -0.65 16 28 C -0.16 -1.09 9.19 37.16 0.34 -0.75 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 31 H 0.06 0.62 7.09 -51.93 -0.37 0.25 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.11 6.71 -52.49 -0.35 0.76 16 34 H 0.41 5.68 7.45 -40.82 -0.30 5.37 16 35 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 36 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 37 H 0.39 6.30 8.32 -40.82 -0.34 5.96 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.13 1.31 6.67 -52.49 -0.35 0.96 16 42 H 0.06 0.41 7.60 -51.93 -0.39 0.02 16 43 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 44 H 0.08 0.68 5.70 -51.93 -0.30 0.38 16 45 H 0.10 0.99 6.91 -51.93 -0.36 0.63 16 46 H 0.06 0.33 6.68 -51.93 -0.35 -0.02 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 413.45 15.07 6.23 6.23 Total: -1.00 -32.73 413.45 -9.14 -41.88 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.00 Total: 7.67 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.09 Total: 3.15 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.43 Total: -54.29 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.88 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.73 -9.14 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783239474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.632 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds