Wall clock time and date at job start Wed Apr 1 2020 04:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 116.99840 * 2 1 4 4 C 1.38756 * 120.05526 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05406 * 0.02697 * 5 4 3 7 7 C 1.50699 * 119.94410 * 179.97438 * 6 5 4 8 8 C 1.38242 * 120.11316 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05272 * 0.23529 * 8 6 5 10 10 C 1.50698 * 120.02704 * 179.74004 * 9 8 6 11 11 N 1.46902 * 109.47570 * 260.00137 * 10 9 8 12 12 C 1.46903 * 110.99947 * 294.30763 * 11 10 9 13 13 C 1.53232 * 109.34046 * 172.74403 * 12 11 10 14 14 N 1.47080 * 108.52535 * 53.82435 * 13 12 11 15 15 C 1.34780 * 120.88379 * 128.79058 * 14 13 12 16 16 O 1.21580 * 120.00006 * 175.02454 * 15 14 13 17 17 N 1.34773 * 119.99826 * 355.03113 * 15 14 13 18 18 C 1.46504 * 120.00197 * 185.08025 * 17 15 14 19 19 C 1.50693 * 109.47224 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00305 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99836 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46811 * 119.99893 * 23 21 19 26 26 H 1.48501 * 109.46975 * 239.99477 * 23 21 19 27 27 C 1.47077 * 118.23581 * 308.81813 * 14 13 12 28 28 C 1.46894 * 111.00505 * 169.99789 * 11 10 9 29 29 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 299.99769 * 1 2 3 31 31 H 1.09002 * 109.47131 * 60.00028 * 1 2 3 32 32 H 1.07998 * 120.02767 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.97589 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47393 * 270.02146 * 7 6 5 35 35 H 1.09005 * 109.46854 * 30.02038 * 7 6 5 36 36 H 1.09000 * 109.47306 * 150.01719 * 7 6 5 37 37 H 1.08002 * 119.97466 * 179.97438 * 8 6 5 38 38 H 1.09007 * 109.47568 * 20.00167 * 10 9 8 39 39 H 1.09004 * 109.47318 * 140.00104 * 10 9 8 40 40 H 1.09001 * 109.48554 * 292.69603 * 12 11 10 41 41 H 1.08997 * 109.49628 * 52.77841 * 12 11 10 42 42 H 1.08998 * 109.63051 * 294.11167 * 13 12 11 43 43 H 1.09005 * 109.78969 * 173.63025 * 13 12 11 44 44 H 0.96999 * 120.00243 * 5.07102 * 17 15 14 45 45 H 1.09006 * 109.46531 * 299.99775 * 18 17 15 46 46 H 1.08997 * 109.46771 * 59.99239 * 18 17 15 47 47 H 0.97005 * 119.99786 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.62946 * 291.47154 * 27 14 13 49 49 H 1.09000 * 109.79120 * 170.98816 * 27 14 13 50 50 H 1.09002 * 109.49426 * 307.21516 * 28 11 10 51 51 H 1.09005 * 109.49260 * 67.26854 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.0559 2.5172 -0.0011 9 6 3.4311 1.2849 -0.0050 10 6 4.2537 0.0223 -0.0103 11 7 4.3182 -0.5144 -1.3763 12 6 2.9921 -0.9507 -1.8337 13 6 3.0668 -1.3323 -3.3159 14 7 4.1413 -2.3214 -3.4902 15 6 3.9161 -3.4801 -4.1408 16 8 4.8360 -4.2456 -4.3551 17 7 2.6713 -3.7900 -4.5539 18 6 2.4050 -5.0964 -5.1612 19 6 0.9473 -5.1904 -5.5317 20 1 0.2853 -4.3602 -5.3342 21 6 0.4586 -6.3366 -6.1219 22 7 1.2646 -7.3477 -6.3619 23 14 -1.3485 -6.4534 -6.5805 24 1 -2.0363 -5.1912 -6.2079 25 1 -1.4746 -6.6732 -8.0438 26 1 -1.9712 -7.5890 -5.8540 27 6 5.4679 -2.0127 -2.9352 28 6 5.2988 -1.6043 -1.4680 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 -0.0005 33 1 1.3339 4.5113 -0.0011 34 1 4.1502 5.3418 -1.0307 35 1 3.3582 5.7466 0.5111 36 1 4.9442 4.9386 0.5105 37 1 5.1344 2.5753 -0.0020 38 1 5.2616 0.2437 0.3410 39 1 3.7931 -0.7143 0.6480 40 1 2.6728 -1.8149 -1.2513 41 1 2.2769 -0.1387 -1.7027 42 1 3.2847 -0.4460 -3.9117 43 1 2.1174 -1.7631 -3.6343 44 1 1.9516 -3.1482 -4.4491 45 1 3.0160 -5.2122 -6.0564 46 1 2.6502 -5.8846 -4.4494 47 1 0.9208 -8.1540 -6.7774 48 1 5.9168 -1.1917 -3.4944 49 1 6.1084 -2.8924 -2.9990 50 1 6.2564 -1.2664 -1.0718 51 1 4.9475 -2.4593 -0.8902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:38 Heat of formation + Delta-G solvation = -21.762889 kcal Electronic energy + Delta-G solvation = -31152.013457 eV Core-core repulsion = 27052.222967 eV Total energy + Delta-G solvation = -4099.790490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85454 -39.68683 -37.98606 -37.71802 -34.65722 -34.18887 -32.57102 -32.14979 -31.58203 -30.84425 -28.26281 -28.05781 -26.82220 -26.13044 -24.60090 -23.73005 -22.62294 -21.98992 -20.97343 -20.56707 -18.97870 -18.25679 -18.00227 -16.73908 -16.48520 -15.97789 -15.76393 -15.47235 -15.00019 -14.95535 -14.81661 -14.60679 -14.50214 -14.43826 -14.07897 -13.92187 -13.63870 -13.44953 -13.04594 -12.86240 -12.59223 -12.47043 -12.31035 -12.13675 -11.97035 -11.83791 -11.69762 -11.51865 -11.36374 -11.20770 -11.13762 -10.97868 -10.89098 -10.87834 -10.63105 -10.25951 -9.32884 -9.27248 -9.15405 -8.70511 -8.55625 -8.31447 -8.11904 -7.64384 -6.12832 -4.18998 1.04858 1.14700 3.01677 3.23310 3.24935 3.32138 3.35091 3.40796 3.93368 4.06857 4.33374 4.41893 4.50405 4.60344 4.73877 4.77385 4.90709 4.98195 4.99540 5.01872 5.07027 5.15608 5.23167 5.25700 5.30597 5.32759 5.36252 5.37934 5.39590 5.50522 5.57070 5.61178 5.64015 5.80362 5.90751 5.95402 6.01676 6.06963 6.14032 6.21073 6.35171 6.53256 6.82979 6.91330 7.01299 7.13199 7.23831 7.56608 7.60745 7.62048 7.91951 8.06403 8.80052 8.96124 9.37558 9.52360 10.97511 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.002534 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.045237 B =11048.876762 C =12509.954134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.126 3.874 4 C -0.203 4.203 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.109 4.109 8 C -0.065 4.065 9 C -0.102 4.102 10 C 0.103 3.897 11 N -0.530 5.530 12 C 0.041 3.959 13 C 0.117 3.883 14 N -0.640 5.640 15 C 0.698 3.302 16 O -0.600 6.600 17 N -0.730 5.730 18 C 0.266 3.734 19 C -0.539 4.539 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.139 3.861 28 C 0.041 3.959 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.385 0.615 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.265 0.735 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 24.886 17.040 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.081 3.919 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.125 4.125 7 C -0.165 4.165 8 C -0.083 4.083 9 C -0.103 4.103 10 C -0.024 4.024 11 N -0.255 5.255 12 C -0.087 4.087 13 C -0.007 4.007 14 N -0.380 5.380 15 C 0.399 3.601 16 O -0.480 6.480 17 N -0.384 5.384 18 C 0.145 3.855 19 C -0.578 4.578 20 H 0.080 0.920 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.015 3.985 28 C -0.087 4.087 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.219 0.781 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.784 24.217 16.468 29.417 hybrid contribution -2.021 -0.311 0.308 2.068 sum 0.763 23.905 16.776 29.214 Atomic orbital electron populations 1.23092 0.78433 1.04363 1.01279 1.86260 1.21362 1.26569 1.88122 1.18811 0.91853 0.84379 0.96880 1.21194 0.99982 0.92273 1.08761 1.20794 0.93954 0.96948 0.98428 1.19804 0.93615 0.95508 1.03588 1.20711 1.00193 0.93404 1.02222 1.20738 0.99693 0.90323 0.97575 1.19098 0.90263 0.95587 1.05331 1.20832 0.98843 0.92883 0.89837 1.62027 1.08055 1.33493 1.21947 1.22757 0.90603 1.00341 0.94989 1.21675 0.90930 0.92156 0.95918 1.47340 1.11538 1.18527 1.60553 1.16057 0.84345 0.80875 0.78817 1.90847 1.43138 1.51020 1.62962 1.45859 1.07251 1.20758 1.64579 1.18974 0.95814 0.77609 0.93096 1.21249 0.93652 1.01362 1.41511 0.92028 1.24950 0.98371 0.95361 0.95397 1.69994 1.35102 1.05099 1.42054 0.86370 0.84265 0.78078 0.78221 1.19691 1.20800 1.20850 1.21376 0.84546 1.01105 0.91497 1.22540 0.96126 0.92499 0.97580 0.87954 0.92805 0.92418 0.85486 0.86028 0.91362 0.91877 0.91686 0.85381 0.90061 0.93584 0.94048 0.88556 0.91450 0.90089 0.78055 0.95680 0.95920 0.92553 0.91694 0.88773 0.89892 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.13 6.68 -19.41 -0.13 -3.26 16 3 C 0.13 1.27 5.41 -39.22 -0.21 1.06 16 4 C -0.20 -1.76 9.04 -39.43 -0.36 -2.12 16 5 C -0.08 -0.67 9.69 -39.60 -0.38 -1.05 16 6 C -0.12 -1.02 5.88 -104.60 -0.62 -1.63 16 7 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 8 C -0.06 -0.57 9.32 -39.61 -0.37 -0.94 16 9 C -0.10 -1.02 5.17 -104.48 -0.54 -1.56 16 10 C 0.10 1.05 4.99 -4.98 -0.02 1.03 16 11 N -0.53 -6.24 4.62 -235.76 -1.09 -7.33 16 12 C 0.04 0.53 4.24 -3.70 -0.02 0.51 16 13 C 0.12 1.66 6.60 -3.61 -0.02 1.63 16 14 N -0.64 -11.01 3.01 -178.20 -0.54 -11.55 16 15 C 0.70 15.53 8.31 -86.92 -0.72 14.81 16 16 O -0.60 -15.74 15.83 5.29 0.08 -15.65 16 17 N -0.73 -16.63 5.46 -66.42 -0.36 -16.99 16 18 C 0.27 7.36 5.43 -5.20 -0.03 7.33 16 19 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 20 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.88 -26.47 13.29 55.43 0.74 -25.74 16 23 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.14 2.03 6.58 -3.60 -0.02 2.01 16 28 C 0.04 0.50 5.62 -3.70 -0.02 0.47 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 32 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 38 H 0.08 0.69 7.83 -51.93 -0.41 0.29 16 39 H 0.05 0.51 7.83 -51.93 -0.41 0.11 16 40 H 0.04 0.59 8.03 -51.93 -0.42 0.17 16 41 H 0.10 1.16 4.34 -51.93 -0.23 0.94 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.13 5.63 -51.93 -0.29 0.84 16 44 H 0.38 7.65 5.82 -40.82 -0.24 7.41 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 1.52 7.11 -51.93 -0.37 1.15 16 50 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 51 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -34.43 401.94 -10.74 -45.17 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.07 Total: 4.42 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -2.40 Total: 8.84 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -1.25 Total: -61.61 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.43 -10.74 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.405 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds