Wall clock time and date at job start Wed Apr 1 2020 04:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 116.99840 * 2 1 4 4 C 1.38756 * 120.05526 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05406 * 0.02697 * 5 4 3 7 7 C 1.50699 * 119.94410 * 179.97438 * 6 5 4 8 8 C 1.38242 * 120.11316 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05272 * 0.23529 * 8 6 5 10 10 C 1.50698 * 120.02704 * 179.74004 * 9 8 6 11 11 N 1.46902 * 109.47570 * 260.00137 * 10 9 8 12 12 C 1.46903 * 110.99947 * 294.30763 * 11 10 9 13 13 C 1.53232 * 109.34046 * 172.74403 * 12 11 10 14 14 N 1.47080 * 108.52535 * 53.82435 * 13 12 11 15 15 C 1.34780 * 120.88379 * 128.79058 * 14 13 12 16 16 O 1.21580 * 120.00006 * 175.02454 * 15 14 13 17 17 N 1.34773 * 119.99826 * 355.03113 * 15 14 13 18 18 C 1.46504 * 120.00197 * 185.08025 * 17 15 14 19 19 C 1.50693 * 109.47224 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00305 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99836 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46811 * 119.99893 * 23 21 19 26 26 H 1.48501 * 109.46975 * 239.99477 * 23 21 19 27 27 C 1.47077 * 118.23581 * 308.81813 * 14 13 12 28 28 C 1.46894 * 111.00505 * 169.99789 * 11 10 9 29 29 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 299.99769 * 1 2 3 31 31 H 1.09002 * 109.47131 * 60.00028 * 1 2 3 32 32 H 1.07998 * 120.02767 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.97589 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47393 * 270.02146 * 7 6 5 35 35 H 1.09005 * 109.46854 * 30.02038 * 7 6 5 36 36 H 1.09000 * 109.47306 * 150.01719 * 7 6 5 37 37 H 1.08002 * 119.97466 * 179.97438 * 8 6 5 38 38 H 1.09007 * 109.47568 * 20.00167 * 10 9 8 39 39 H 1.09004 * 109.47318 * 140.00104 * 10 9 8 40 40 H 1.09001 * 109.48554 * 292.69603 * 12 11 10 41 41 H 1.08997 * 109.49628 * 52.77841 * 12 11 10 42 42 H 1.08998 * 109.63051 * 294.11167 * 13 12 11 43 43 H 1.09005 * 109.78969 * 173.63025 * 13 12 11 44 44 H 0.96999 * 120.00243 * 5.07102 * 17 15 14 45 45 H 1.09006 * 109.46531 * 299.99775 * 18 17 15 46 46 H 1.08997 * 109.46771 * 59.99239 * 18 17 15 47 47 H 0.97005 * 119.99786 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.62946 * 291.47154 * 27 14 13 49 49 H 1.09000 * 109.79120 * 170.98816 * 27 14 13 50 50 H 1.09002 * 109.49426 * 307.21516 * 28 11 10 51 51 H 1.09005 * 109.49260 * 67.26854 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.0559 2.5172 -0.0011 9 6 3.4311 1.2849 -0.0050 10 6 4.2537 0.0223 -0.0103 11 7 4.3182 -0.5144 -1.3763 12 6 2.9921 -0.9507 -1.8337 13 6 3.0668 -1.3323 -3.3159 14 7 4.1413 -2.3214 -3.4902 15 6 3.9161 -3.4801 -4.1408 16 8 4.8360 -4.2456 -4.3551 17 7 2.6713 -3.7900 -4.5539 18 6 2.4050 -5.0964 -5.1612 19 6 0.9473 -5.1904 -5.5317 20 1 0.2853 -4.3602 -5.3342 21 6 0.4586 -6.3366 -6.1219 22 7 1.2646 -7.3477 -6.3619 23 14 -1.3485 -6.4534 -6.5805 24 1 -2.0363 -5.1912 -6.2079 25 1 -1.4746 -6.6732 -8.0438 26 1 -1.9712 -7.5890 -5.8540 27 6 5.4679 -2.0127 -2.9352 28 6 5.2988 -1.6043 -1.4680 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 -0.0005 33 1 1.3339 4.5113 -0.0011 34 1 4.1502 5.3418 -1.0307 35 1 3.3582 5.7466 0.5111 36 1 4.9442 4.9386 0.5105 37 1 5.1344 2.5753 -0.0020 38 1 5.2616 0.2437 0.3410 39 1 3.7931 -0.7143 0.6480 40 1 2.6728 -1.8149 -1.2513 41 1 2.2769 -0.1387 -1.7027 42 1 3.2847 -0.4460 -3.9117 43 1 2.1174 -1.7631 -3.6343 44 1 1.9516 -3.1482 -4.4491 45 1 3.0160 -5.2122 -6.0564 46 1 2.6502 -5.8846 -4.4494 47 1 0.9208 -8.1540 -6.7774 48 1 5.9168 -1.1917 -3.4944 49 1 6.1084 -2.8924 -2.9990 50 1 6.2564 -1.2664 -1.0718 51 1 4.9475 -2.4593 -0.8902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:37 Heat of formation + Delta-G solvation = -44.887957 kcal Electronic energy + Delta-G solvation = -31153.016235 eV Core-core repulsion = 27052.222967 eV Total energy + Delta-G solvation = -4100.793268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.65987 -41.11746 -39.04274 -38.56935 -36.24225 -35.89368 -34.39743 -33.08357 -32.32442 -32.00753 -29.68967 -28.71857 -28.39101 -26.71589 -25.69239 -24.97621 -24.37071 -22.79415 -22.22874 -21.35019 -20.65639 -19.53303 -18.86905 -18.10477 -17.51719 -17.28218 -17.18863 -16.59982 -16.49303 -16.35411 -15.89308 -15.62156 -15.36130 -15.19380 -15.15525 -14.91016 -14.75938 -14.68567 -14.38169 -14.12461 -13.89513 -13.62994 -13.38737 -13.09552 -12.96539 -12.87782 -12.78729 -12.75408 -12.56517 -12.45403 -12.27332 -12.20989 -12.18153 -12.08642 -11.60319 -11.48883 -11.44923 -11.13341 -10.82437 -10.09986 -9.81235 -9.55963 -9.23098 -8.87307 -8.28964 -6.45702 0.40581 0.51803 1.42413 1.44618 1.57552 1.74017 2.17518 2.37779 2.41866 2.68208 3.05734 3.11506 3.14892 3.74511 3.88354 3.89662 4.00510 4.04908 4.17732 4.22579 4.26700 4.32687 4.40995 4.44030 4.47734 4.51335 4.58544 4.63384 4.75134 4.76915 4.80564 4.84584 4.87015 4.93063 4.94844 5.05070 5.06935 5.16370 5.25327 5.26135 5.42711 5.45754 5.51643 5.53315 5.69437 5.75659 5.83341 5.94203 5.97205 6.01683 6.15832 6.49490 6.65413 7.14200 7.24209 7.66236 8.83730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.002534 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.045237 B =11048.876762 C =12509.954134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.109 3.891 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.107 4.107 8 C -0.070 4.070 9 C -0.120 4.120 10 C 0.108 3.892 11 N -0.529 5.529 12 C 0.054 3.946 13 C 0.114 3.886 14 N -0.630 5.630 15 C 0.693 3.307 16 O -0.647 6.647 17 N -0.725 5.725 18 C 0.286 3.714 19 C -0.553 4.553 20 H 0.082 0.918 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.987 3.013 24 H -0.252 1.252 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.134 3.866 28 C 0.050 3.950 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.401 0.599 45 H -0.015 1.015 46 H -0.016 1.016 47 H 0.269 0.731 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.115 0.885 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 27.988 17.848 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.064 3.936 4 C -0.228 4.228 5 C -0.106 4.106 6 C -0.131 4.131 7 C -0.164 4.164 8 C -0.089 4.089 9 C -0.121 4.121 10 C -0.019 4.019 11 N -0.253 5.253 12 C -0.075 4.075 13 C -0.009 4.009 14 N -0.368 5.368 15 C 0.395 3.605 16 O -0.530 6.530 17 N -0.380 5.380 18 C 0.163 3.837 19 C -0.591 4.591 20 H 0.100 0.900 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.810 3.190 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.204 1.204 27 C 0.011 3.989 28 C -0.078 4.078 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.119 0.881 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.238 0.762 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.133 0.867 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.215 27.410 17.324 32.448 hybrid contribution -1.467 -1.184 0.118 1.889 sum -0.252 26.227 17.441 31.498 Atomic orbital electron populations 1.23250 0.77227 1.04904 1.02292 1.86214 1.22765 1.27052 1.88306 1.19015 0.92161 0.84754 0.97643 1.21425 1.00818 0.92118 1.08426 1.21120 0.94318 0.97518 0.97638 1.20127 0.93886 0.96331 1.02774 1.20746 1.00597 0.92349 1.02697 1.20952 1.00528 0.90124 0.97277 1.19193 0.90465 0.95800 1.06657 1.20836 0.99990 0.92714 0.88372 1.62061 1.07248 1.32766 1.23245 1.22620 0.91585 0.99920 0.93362 1.21914 0.89872 0.91631 0.97440 1.47390 1.13447 1.17182 1.58821 1.16235 0.83446 0.81925 0.78940 1.90808 1.44377 1.53038 1.64744 1.45487 1.08287 1.19595 1.64671 1.18422 0.95851 0.78865 0.90588 1.21582 0.93513 1.02319 1.41675 0.89993 1.26094 1.04040 0.94653 0.94864 1.70157 1.37932 1.05961 1.42822 0.85076 0.77243 0.78874 0.77785 1.17546 1.20377 1.20356 1.21595 0.82957 1.00893 0.93479 1.22472 0.97804 0.92268 0.95270 0.87720 0.91561 0.91602 0.84058 0.84054 0.91022 0.90815 0.90917 0.84065 0.88130 0.94910 0.95959 0.87412 0.89827 0.90052 0.76176 0.99707 0.99813 0.92212 0.89862 0.90700 0.86666 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.37 6.68 -92.38 -0.62 -6.99 16 3 C 0.11 2.05 5.41 22.51 0.12 2.17 16 4 C -0.21 -3.21 9.04 22.37 0.20 -3.01 16 5 C -0.09 -1.20 9.69 22.25 0.22 -0.98 16 6 C -0.13 -1.81 5.88 -19.85 -0.12 -1.92 16 7 C -0.11 -0.95 10.01 71.24 0.71 -0.23 16 8 C -0.07 -1.09 9.32 22.25 0.21 -0.88 16 9 C -0.12 -2.22 5.17 -19.77 -0.10 -2.32 16 10 C 0.11 2.03 4.99 85.56 0.43 2.46 16 11 N -0.53 -11.62 4.62 -899.82 -4.16 -15.78 16 12 C 0.05 1.31 4.24 86.38 0.37 1.68 16 13 C 0.11 3.11 6.60 86.35 0.57 3.68 16 14 N -0.63 -21.75 3.01 -835.95 -2.52 -24.27 16 15 C 0.69 31.92 8.31 179.05 1.49 33.41 16 16 O -0.65 -35.66 15.83 -3.97 -0.06 -35.72 16 17 N -0.72 -33.99 5.46 -482.30 -2.63 -36.63 16 18 C 0.29 16.57 5.43 85.63 0.47 17.04 16 19 C -0.55 -30.99 9.28 25.60 0.24 -30.75 16 20 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 21 C 0.00 0.17 5.46 84.66 0.46 0.63 16 22 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 23 Si 0.99 42.81 29.54 68.60 2.03 44.83 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.13 3.86 6.58 86.35 0.57 4.43 16 28 C 0.05 1.15 5.62 86.38 0.49 1.64 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 31 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.14 1.63 6.30 -2.91 -0.02 1.61 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.49 8.08 -2.38 -0.02 0.48 16 36 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 37 H 0.14 1.69 8.04 -2.91 -0.02 1.66 16 38 H 0.10 1.48 7.83 -2.38 -0.02 1.46 16 39 H 0.03 0.71 7.83 -2.38 -0.02 0.69 16 40 H 0.02 0.63 8.03 -2.39 -0.02 0.61 16 41 H 0.11 2.47 4.34 -2.39 -0.01 2.46 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.19 5.63 -2.38 -0.01 2.18 16 44 H 0.40 15.96 5.82 -92.71 -0.54 15.42 16 45 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 46 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 48 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 49 H 0.07 2.48 7.11 -2.39 -0.02 2.46 16 50 H 0.12 1.93 7.99 -2.39 -0.02 1.91 16 51 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -77.44 401.94 0.14 -77.30 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.40 Total: 25.71 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 7.42 Total: 28.37 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -9.02 Total: -133.51 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.68 Total: -42.71 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -77.44 0.14 -77.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.412 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds