Wall clock time and date at job start Wed Apr 1 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 N 1.40103 * 119.99524 * 179.97438 * 11 9 8 13 13 C 1.34780 * 119.99524 * 180.02562 * 12 11 9 14 14 O 1.21587 * 119.99562 * 180.02562 * 13 12 11 15 15 N 1.34779 * 120.00180 * 0.02562 * 13 12 11 16 16 C 1.46499 * 119.99836 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46775 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46816 * 299.99861 * 17 16 15 19 19 C 1.52996 * 109.47121 * 59.99758 * 17 16 15 20 20 C 1.52998 * 109.46994 * 180.02562 * 17 16 15 21 21 C 1.50690 * 109.47095 * 179.97438 * 20 17 16 22 22 H 1.08000 * 120.00313 * 359.97438 * 21 20 17 23 23 C 1.37883 * 120.00111 * 179.97438 * 21 20 17 24 24 N 1.31516 * 119.99661 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00139 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47059 * 60.00648 * 25 23 21 27 27 H 1.48504 * 109.46884 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47350 * 300.00353 * 25 23 21 29 29 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 30 30 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 31 31 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 32 32 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 33 33 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 34 34 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 37 37 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 38 38 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 39 39 H 0.96995 * 120.00466 * 0.02562 * 12 11 9 40 40 H 0.97001 * 119.99540 * 359.97438 * 15 13 12 41 41 H 1.09000 * 109.46819 * 299.99971 * 16 15 13 42 42 H 1.09004 * 109.47109 * 60.00291 * 16 15 13 43 43 H 1.08997 * 109.47486 * 60.00500 * 18 17 16 44 44 H 1.09006 * 109.46876 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.47415 * 299.99838 * 18 17 16 46 46 H 1.09005 * 109.46822 * 59.99985 * 19 17 16 47 47 H 1.08997 * 109.47081 * 179.97438 * 19 17 16 48 48 H 1.09000 * 109.47493 * 300.00176 * 19 17 16 49 49 H 1.09005 * 109.47088 * 300.00101 * 20 17 16 50 50 H 1.09002 * 109.46891 * 59.99568 * 20 17 16 51 51 H 0.97001 * 120.00111 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 7 0.0585 -4.3652 -2.9550 13 6 -0.6238 -5.5026 -3.1948 14 8 -0.9181 -5.8061 -4.3348 15 7 -0.9797 -6.3035 -2.1709 16 6 -1.7218 -7.5395 -2.4316 17 6 -1.9987 -8.2567 -1.1087 18 6 -0.6727 -8.5927 -0.4235 19 6 -2.8267 -7.3469 -0.1990 20 6 -2.7731 -9.5478 -1.3809 21 6 -3.0454 -10.2544 -0.0781 22 1 -2.7002 -9.8258 0.8512 23 6 -3.7351 -11.4483 -0.0723 24 7 -4.1550 -11.9705 -1.2040 25 14 -4.0720 -12.3246 1.5426 26 1 -4.8752 -11.4421 2.4265 27 1 -4.8248 -13.5771 1.2784 28 1 -2.7845 -12.6509 2.2067 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5177 31 1 -0.3634 -0.8923 -0.5099 32 1 1.6583 2.1327 0.0008 33 1 4.1204 2.1326 -0.0096 34 1 5.3516 0.0000 -0.0106 35 1 4.1206 -2.1322 -0.0005 36 1 0.5365 -2.3945 0.6047 37 1 2.0715 -3.2814 0.4446 38 1 0.1419 -4.5922 -0.9046 39 1 0.3143 -3.7886 -3.6918 40 1 -0.7446 -6.0615 -1.2615 41 1 -2.6666 -7.3000 -2.9194 42 1 -1.1320 -8.1875 -3.0801 43 1 -0.1206 -7.6732 -0.2295 44 1 -0.8700 -9.1040 0.5188 45 1 -0.0828 -9.2409 -1.0715 46 1 -3.7714 -7.1074 -0.6872 47 1 -3.0243 -7.8579 0.7432 48 1 -2.2746 -6.4272 -0.0051 49 1 -3.7178 -9.3088 -1.8694 50 1 -2.1828 -10.1957 -2.0289 51 1 -4.6400 -12.8106 -1.2000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807591375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:32 Heat of formation + Delta-G solvation = -23.619482 kcal Electronic energy + Delta-G solvation = -30046.226811 eV Core-core repulsion = 25946.355814 eV Total energy + Delta-G solvation = -4099.870998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89577 -40.03470 -38.99353 -37.30073 -35.85037 -33.78405 -33.61841 -32.65397 -32.11283 -31.10641 -28.22660 -27.18177 -26.89899 -26.61722 -26.21292 -23.10606 -22.74036 -21.94582 -21.11171 -20.73832 -19.47504 -18.21473 -17.78559 -16.74242 -16.45809 -16.45282 -16.14666 -15.68264 -15.50320 -15.16902 -14.88758 -14.63136 -14.44469 -14.20293 -13.84937 -13.79093 -13.51486 -13.32237 -13.18111 -12.84723 -12.78017 -12.53417 -12.33764 -12.31715 -12.11062 -11.53865 -11.35158 -11.30430 -11.22040 -11.07033 -10.93397 -10.70400 -10.67956 -10.48793 -10.33485 -10.28666 -9.96461 -9.29246 -9.12669 -9.03306 -9.00437 -8.90825 -8.45384 -8.40107 -6.04166 -4.06016 0.93684 1.09176 1.69302 2.11872 3.03485 3.13536 3.28444 3.34603 3.35083 3.41438 4.10599 4.25141 4.40089 4.40936 4.59519 4.66829 4.80605 4.81363 4.96675 4.97688 5.21523 5.27821 5.31020 5.35512 5.36350 5.47094 5.53613 5.62852 5.69904 5.82578 6.04223 6.05186 6.12070 6.13382 6.18984 6.21114 6.28388 6.29821 6.40988 6.53174 6.53516 6.66285 6.68818 6.96131 6.99002 7.03501 7.07996 7.50466 7.58536 7.70172 7.93629 8.07379 8.34464 8.47215 8.98356 9.57235 11.07074 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.001900 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.501226 B =14736.765517 C =15579.972075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.100 4.100 7 C -0.071 4.071 8 C -0.095 4.095 9 C 0.515 3.485 10 O -0.523 6.523 11 N -0.530 5.530 12 N -0.538 5.538 13 C 0.708 3.292 14 O -0.572 6.572 15 N -0.733 5.733 16 C 0.143 3.857 17 C -0.073 4.073 18 C -0.127 4.127 19 C -0.127 4.127 20 C 0.037 3.963 21 C -0.513 4.513 22 H 0.059 0.941 23 C 0.056 3.944 24 N -0.893 5.893 25 Si 0.890 3.110 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.420 0.580 39 H 0.439 0.561 40 H 0.388 0.612 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.748 24.325 6.483 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.118 4.118 7 C -0.071 4.071 8 C -0.136 4.136 9 C 0.301 3.699 10 O -0.397 6.397 11 N -0.282 5.282 12 N -0.296 5.296 13 C 0.408 3.592 14 O -0.446 6.446 15 N -0.390 5.390 16 C 0.020 3.980 17 C -0.074 4.074 18 C -0.184 4.184 19 C -0.184 4.184 20 C -0.001 4.001 21 C -0.552 4.552 22 H 0.077 0.923 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.261 0.739 39 H 0.285 0.715 40 H 0.224 0.776 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.038 0.962 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.566 24.292 4.962 28.262 hybrid contribution -0.092 -0.549 1.320 1.433 sum 13.474 23.743 6.282 28.013 Atomic orbital electron populations 1.20856 0.91270 1.03190 1.02234 1.19715 0.95949 0.92585 0.98290 1.20997 0.94307 0.97372 1.01277 1.21145 0.94319 0.98091 0.99651 1.21082 0.99871 0.92441 1.01050 1.20994 0.93285 0.98384 0.99185 1.19015 0.93404 0.92696 1.02007 1.20616 1.02770 0.97096 0.93110 1.20791 0.77575 0.79446 0.92103 1.90777 1.52924 1.50362 1.45595 1.44980 1.58812 1.25019 0.99352 1.44676 1.61796 1.25045 0.98055 1.15827 0.78741 0.79098 0.85573 1.91034 1.60511 1.72609 1.20423 1.45419 1.60841 1.25029 1.07753 1.21618 0.95305 0.82418 0.98654 1.20938 0.96418 0.97921 0.92086 1.21767 0.95792 0.98929 1.01918 1.21765 0.98903 0.96731 1.00994 1.19083 0.94607 0.89066 0.97334 1.21117 1.35420 1.05712 0.92918 0.92311 1.25019 0.95968 0.97494 0.96012 1.69950 1.38284 1.19541 1.25433 0.86702 0.78326 0.79085 0.84112 1.20340 1.21402 1.20335 0.90840 0.91269 0.91672 0.86063 0.86131 0.86055 0.86031 0.87091 0.87161 0.73858 0.71497 0.77612 0.91541 0.91538 0.95584 0.91272 0.93191 0.93191 0.91274 0.95579 0.96232 0.96236 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.22 36.00 0.33 -0.48 16 2 C -0.07 -0.54 5.88 -104.63 -0.62 -1.16 16 3 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 4 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 5 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 6 C -0.10 -0.80 9.68 -39.58 -0.38 -1.19 16 7 C -0.07 -0.58 4.37 -104.62 -0.46 -1.03 16 8 C -0.09 -0.56 5.15 -29.03 -0.15 -0.71 16 9 C 0.51 4.68 7.14 -10.98 -0.08 4.60 16 10 O -0.52 -6.84 15.87 5.56 0.09 -6.75 16 11 N -0.53 -4.53 6.26 31.22 0.20 -4.34 16 12 N -0.54 -6.35 6.26 27.64 0.17 -6.18 16 13 C 0.71 10.41 8.68 -86.91 -0.75 9.65 16 14 O -0.57 -10.86 17.18 5.29 0.09 -10.77 16 15 N -0.73 -9.71 4.92 -65.22 -0.32 -10.03 16 16 C 0.14 2.36 4.56 -4.04 -0.02 2.34 16 17 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 18 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 19 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 20 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 21 C -0.51 -13.07 7.65 -34.44 -0.26 -13.33 16 22 H 0.06 1.42 5.68 -52.49 -0.30 1.12 16 23 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 24 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 25 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.48 6.15 -51.93 -0.32 0.16 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.11 0.42 7.01 -51.93 -0.36 0.06 16 37 H 0.11 0.39 8.05 -51.93 -0.42 -0.03 16 38 H 0.42 2.51 6.70 -182.60 -1.22 1.29 16 39 H 0.44 5.42 8.10 -182.60 -1.48 3.94 16 40 H 0.39 4.02 4.08 -40.82 -0.17 3.85 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.03 0.31 6.86 -51.93 -0.36 -0.04 16 44 H 0.07 1.19 6.61 -51.93 -0.34 0.85 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 48 H 0.03 0.31 6.86 -51.93 -0.36 -0.04 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 411.25 15.07 6.20 6.20 Total: -1.00 -33.85 411.25 -11.00 -44.84 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -9.87 Total: 4.32 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.26 Total: -7.87 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.78 Total: -45.55 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.18 Total: -17.52 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.85 -11.00 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.225 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds