Wall clock time and date at job start Wed Apr 1 2020 04:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 N 1.40103 * 119.99524 * 179.97438 * 11 9 8 13 13 C 1.34780 * 119.99524 * 180.02562 * 12 11 9 14 14 O 1.21587 * 119.99562 * 180.02562 * 13 12 11 15 15 N 1.34779 * 120.00180 * 0.02562 * 13 12 11 16 16 C 1.46499 * 119.99836 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46775 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46816 * 299.99861 * 17 16 15 19 19 C 1.52996 * 109.47121 * 59.99758 * 17 16 15 20 20 C 1.52998 * 109.46994 * 180.02562 * 17 16 15 21 21 C 1.50690 * 109.47095 * 179.97438 * 20 17 16 22 22 H 1.08000 * 120.00313 * 359.97438 * 21 20 17 23 23 C 1.37883 * 120.00111 * 179.97438 * 21 20 17 24 24 N 1.31516 * 119.99661 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00139 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47059 * 60.00648 * 25 23 21 27 27 H 1.48504 * 109.46884 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47350 * 300.00353 * 25 23 21 29 29 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 30 30 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 31 31 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 32 32 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 33 33 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 34 34 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 37 37 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 38 38 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 39 39 H 0.96995 * 120.00466 * 0.02562 * 12 11 9 40 40 H 0.97001 * 119.99540 * 359.97438 * 15 13 12 41 41 H 1.09000 * 109.46819 * 299.99971 * 16 15 13 42 42 H 1.09004 * 109.47109 * 60.00291 * 16 15 13 43 43 H 1.08997 * 109.47486 * 60.00500 * 18 17 16 44 44 H 1.09006 * 109.46876 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.47415 * 299.99838 * 18 17 16 46 46 H 1.09005 * 109.46822 * 59.99985 * 19 17 16 47 47 H 1.08997 * 109.47081 * 179.97438 * 19 17 16 48 48 H 1.09000 * 109.47493 * 300.00176 * 19 17 16 49 49 H 1.09005 * 109.47088 * 300.00101 * 20 17 16 50 50 H 1.09002 * 109.46891 * 59.99568 * 20 17 16 51 51 H 0.97001 * 120.00111 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 7 0.0585 -4.3652 -2.9550 13 6 -0.6238 -5.5026 -3.1948 14 8 -0.9181 -5.8061 -4.3348 15 7 -0.9797 -6.3035 -2.1709 16 6 -1.7218 -7.5395 -2.4316 17 6 -1.9987 -8.2567 -1.1087 18 6 -0.6727 -8.5927 -0.4235 19 6 -2.8267 -7.3469 -0.1990 20 6 -2.7731 -9.5478 -1.3809 21 6 -3.0454 -10.2544 -0.0781 22 1 -2.7002 -9.8258 0.8512 23 6 -3.7351 -11.4483 -0.0723 24 7 -4.1550 -11.9705 -1.2040 25 14 -4.0720 -12.3246 1.5426 26 1 -4.8752 -11.4421 2.4265 27 1 -4.8248 -13.5771 1.2784 28 1 -2.7845 -12.6509 2.2067 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5177 31 1 -0.3634 -0.8923 -0.5099 32 1 1.6583 2.1327 0.0008 33 1 4.1204 2.1326 -0.0096 34 1 5.3516 0.0000 -0.0106 35 1 4.1206 -2.1322 -0.0005 36 1 0.5365 -2.3945 0.6047 37 1 2.0715 -3.2814 0.4446 38 1 0.1419 -4.5922 -0.9046 39 1 0.3143 -3.7886 -3.6918 40 1 -0.7446 -6.0615 -1.2615 41 1 -2.6666 -7.3000 -2.9194 42 1 -1.1320 -8.1875 -3.0801 43 1 -0.1206 -7.6732 -0.2295 44 1 -0.8700 -9.1040 0.5188 45 1 -0.0828 -9.2409 -1.0715 46 1 -3.7714 -7.1074 -0.6872 47 1 -3.0243 -7.8579 0.7432 48 1 -2.2746 -6.4272 -0.0051 49 1 -3.7178 -9.3088 -1.8694 50 1 -2.1828 -10.1957 -2.0289 51 1 -4.6400 -12.8106 -1.2000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807591375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:31 Heat of formation + Delta-G solvation = -45.369301 kcal Electronic energy + Delta-G solvation = -30047.169954 eV Core-core repulsion = 25946.355814 eV Total energy + Delta-G solvation = -4100.814141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78966 -40.91243 -39.74459 -38.72823 -36.84461 -35.19991 -34.33629 -33.84113 -33.19292 -31.97075 -29.08226 -28.74978 -27.91238 -27.61443 -27.35968 -24.92122 -23.36972 -22.57422 -22.24108 -21.46990 -20.53617 -19.45872 -18.75038 -18.30973 -17.31779 -17.15736 -17.12793 -16.69082 -16.67676 -16.30991 -15.82785 -15.70888 -15.54826 -15.22155 -15.20136 -14.69684 -14.36054 -14.29716 -14.01541 -13.89289 -13.87092 -13.81620 -13.26474 -12.98423 -12.82703 -12.82447 -12.73191 -12.58347 -12.42555 -12.28233 -12.20249 -11.97769 -11.89699 -11.80734 -11.78152 -11.50273 -11.22626 -10.97125 -10.83528 -10.47019 -10.28771 -9.67192 -9.44363 -9.39510 -8.10442 -6.17970 0.35348 0.54629 0.87271 1.40000 1.45842 1.47432 1.54499 1.94707 1.98555 2.47539 2.85333 3.24314 3.48665 3.68047 3.93923 3.97001 4.05123 4.12269 4.12804 4.21191 4.25393 4.38942 4.46867 4.61746 4.70132 4.73576 4.75753 4.78890 4.83290 4.87252 4.97232 5.00107 5.10601 5.17618 5.18724 5.31310 5.33659 5.34279 5.46060 5.56001 5.56521 5.58172 5.60973 5.62106 5.66716 5.74407 5.85398 5.93947 6.16787 6.27426 6.33945 6.62040 6.97553 7.18967 7.36677 7.49743 9.01649 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.001900 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.501226 B =14736.765517 C =15579.972075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.086 4.086 8 C -0.089 4.089 9 C 0.519 3.481 10 O -0.565 6.565 11 N -0.517 5.517 12 N -0.532 5.532 13 C 0.711 3.289 14 O -0.620 6.620 15 N -0.715 5.715 16 C 0.157 3.843 17 C -0.064 4.064 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.039 3.961 21 C -0.511 4.511 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.939 5.939 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.295 1.295 28 H -0.266 1.266 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.435 0.565 39 H 0.438 0.562 40 H 0.407 0.593 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.058 0.942 48 H 0.073 0.927 49 H -0.014 1.014 50 H -0.014 1.014 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.982 25.797 9.598 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.156 4.156 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.129 4.129 9 C 0.307 3.693 10 O -0.441 6.441 11 N -0.271 5.271 12 N -0.287 5.287 13 C 0.410 3.590 14 O -0.497 6.497 15 N -0.374 5.374 16 C 0.032 3.968 17 C -0.065 4.065 18 C -0.180 4.180 19 C -0.180 4.180 20 C 0.001 3.999 21 C -0.549 4.549 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.580 5.580 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.221 1.221 28 H -0.191 1.191 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.279 0.721 39 H 0.284 0.716 40 H 0.245 0.755 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.004 0.996 50 H 0.004 0.996 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.826 25.794 8.155 30.849 hybrid contribution -0.418 -0.903 0.315 1.044 sum 14.408 24.891 8.470 29.982 Atomic orbital electron populations 1.20869 0.90443 1.02834 1.03227 1.20020 0.96820 0.92980 0.98438 1.21273 0.94788 0.98010 1.01505 1.21433 0.94505 0.98940 0.99394 1.21385 1.00865 0.92579 1.00968 1.21302 0.93674 0.99138 0.99144 1.19297 0.93739 0.93583 1.02005 1.20739 1.04328 0.96909 0.90937 1.21448 0.76328 0.78553 0.92965 1.90774 1.54531 1.51654 1.47186 1.45042 1.58690 1.25374 0.98002 1.44420 1.60581 1.23826 0.99864 1.15799 0.78703 0.79588 0.84903 1.91008 1.62312 1.73951 1.22434 1.44972 1.60242 1.23700 1.08463 1.21205 0.94614 0.83309 0.97663 1.20724 0.97080 0.95499 0.93166 1.21720 0.94770 1.00957 1.00602 1.21718 0.98692 0.98135 0.99488 1.18977 0.93413 0.91642 0.95875 1.21572 1.33917 1.05359 0.94093 0.90612 1.25959 0.96266 0.98819 0.99340 1.70120 1.39862 1.20059 1.27940 0.85607 0.78519 0.77564 0.79972 1.19085 1.22136 1.19090 0.89096 0.91502 0.92143 0.84995 0.84572 0.84604 0.84664 0.84411 0.84045 0.72063 0.71643 0.75468 0.93294 0.93317 0.90801 0.92311 0.94519 0.94494 0.92315 0.90786 0.99552 0.99571 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.22 71.24 0.66 -0.70 16 2 C -0.08 -1.24 5.88 -19.87 -0.12 -1.36 16 3 C -0.14 -2.03 9.70 22.27 0.22 -1.81 16 4 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 5 C -0.14 -1.94 10.05 22.27 0.22 -1.72 16 6 C -0.11 -1.61 9.68 22.27 0.22 -1.40 16 7 C -0.09 -1.20 4.37 -19.86 -0.09 -1.29 16 8 C -0.09 -0.72 5.15 29.10 0.15 -0.57 16 9 C 0.52 7.97 7.14 87.66 0.63 8.60 16 10 O -0.57 -13.97 15.87 -3.03 -0.05 -14.02 16 11 N -0.52 -7.12 6.26 -173.53 -1.09 -8.20 16 12 N -0.53 -11.58 6.26 -184.74 -1.16 -12.73 16 13 C 0.71 19.95 8.68 179.05 1.55 21.51 16 14 O -0.62 -23.68 17.18 -3.99 -0.07 -23.75 16 15 N -0.72 -17.28 4.92 -478.52 -2.35 -19.64 16 16 C 0.16 5.12 4.56 86.38 0.39 5.52 16 17 C -0.06 -2.18 0.54 -52.18 -0.03 -2.21 16 18 C -0.12 -3.60 8.05 71.98 0.58 -3.02 16 19 C -0.12 -3.58 8.05 71.98 0.58 -3.00 16 20 C 0.04 1.86 4.04 29.84 0.12 1.98 16 21 C -0.51 -26.06 7.65 25.60 0.20 -25.86 16 22 H 0.08 3.54 5.68 -2.91 -0.02 3.52 16 23 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 24 N -0.94 -55.87 13.29 21.45 0.28 -55.58 16 25 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.06 0.74 6.15 -2.39 -0.01 0.73 16 32 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.14 0.41 7.01 -2.39 -0.02 0.39 16 37 H 0.14 0.30 8.05 -2.39 -0.02 0.28 16 38 H 0.44 3.10 6.70 -213.32 -1.43 1.67 16 39 H 0.44 10.40 8.10 -213.32 -1.73 8.67 16 40 H 0.41 6.61 4.08 -92.71 -0.38 6.23 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.07 1.44 6.86 -2.39 -0.02 1.42 16 44 H 0.06 1.86 6.61 -2.38 -0.02 1.84 16 45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.06 1.85 6.62 -2.39 -0.02 1.84 16 48 H 0.07 1.43 6.86 -2.39 -0.02 1.42 16 49 H -0.01 -0.76 8.14 -2.38 -0.02 -0.77 16 50 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 51 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.80 411.25 0.99 -76.80 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -2.57 Total: 19.74 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.96 Total: -6.76 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -4.31 Total: -96.16 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.12 Total: -37.77 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -77.80 0.99 -76.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.433 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds