Wall clock time and date at job start Wed Apr 1 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38044 * 119.99788 * 2 1 4 4 C 1.38912 * 119.99488 * 179.72393 * 3 2 1 5 5 N 1.39888 * 120.00283 * 180.27118 * 4 3 2 6 6 C 1.34779 * 120.00471 * 144.85297 * 5 4 3 7 7 O 1.21389 * 119.99420 * 4.82176 * 6 5 4 8 8 C 1.49317 * 120.00215 * 184.82382 * 6 5 4 9 9 O 1.21367 * 120.00440 * 0.30065 * 8 6 5 10 10 N 1.34778 * 119.99989 * 180.30203 * 8 6 5 11 11 C 1.46496 * 119.99838 * 354.62462 * 10 8 6 12 12 C 1.50700 * 109.47272 * 83.68554 * 11 10 8 13 13 H 1.07998 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00072 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00114 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47296 * 59.99621 * 16 14 12 18 18 H 1.48499 * 109.47240 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46912 * 299.99170 * 16 14 12 20 20 C 1.46499 * 119.99977 * 174.62563 * 10 8 6 21 21 C 1.53001 * 109.47131 * 94.82648 * 20 10 8 22 22 C 1.53005 * 109.47026 * 180.02562 * 21 20 10 23 23 C 1.52992 * 109.47293 * 64.99614 * 22 21 20 24 24 C 1.53002 * 109.46624 * 184.99913 * 22 21 20 25 25 C 1.38954 * 119.99624 * 0.54378 * 4 3 2 26 26 C 1.38001 * 120.00153 * 359.72544 * 25 4 3 27 27 C 1.38901 * 119.99848 * 180.26775 * 2 1 3 28 28 N 1.39831 * 119.99886 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47853 * 269.73170 * 1 2 3 30 30 H 1.09003 * 109.46822 * 149.72744 * 1 2 3 31 31 H 1.08997 * 109.46725 * 29.73460 * 1 2 3 32 32 H 1.07994 * 120.00353 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00028 * 324.85343 * 5 4 3 34 34 H 1.09005 * 109.47034 * 203.68013 * 11 10 8 35 35 H 1.08999 * 109.47545 * 323.68022 * 11 10 8 36 36 H 0.97001 * 120.00282 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47124 * 214.82388 * 20 10 8 38 38 H 1.08992 * 109.47390 * 334.82213 * 20 10 8 39 39 H 1.09003 * 109.46905 * 299.99875 * 21 20 10 40 40 H 1.08992 * 109.47338 * 59.99534 * 21 20 10 41 41 H 1.08996 * 109.46507 * 304.99568 * 22 21 20 42 42 H 1.08996 * 109.47459 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47181 * 300.00205 * 23 22 21 44 44 H 1.09005 * 109.47210 * 60.00262 * 23 22 21 45 45 H 1.08992 * 109.47682 * 60.00087 * 24 22 21 46 46 H 1.09003 * 109.46640 * 180.02562 * 24 22 21 47 47 H 1.09003 * 109.46782 * 299.99324 * 24 22 21 48 48 H 1.08003 * 119.99841 * 179.74829 * 25 4 3 49 49 H 1.07996 * 120.00167 * 179.97438 * 26 25 4 50 50 H 0.97002 * 120.00041 * 359.97438 * 28 27 2 51 51 H 0.97003 * 120.00272 * 180.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1955 0.0000 4 6 3.5863 1.1955 0.0058 5 7 4.2858 2.4068 0.0115 6 6 5.4465 2.5117 0.6885 7 8 5.9295 1.5331 1.2201 8 6 6.1382 3.8315 0.7847 9 8 5.6525 4.8110 0.2578 10 7 7.3020 3.9350 1.4565 11 6 7.8287 2.7822 2.1911 12 6 8.5885 1.8882 1.2452 13 1 8.6704 2.1522 0.2012 14 6 9.1781 0.7328 1.7124 15 7 9.0780 0.4110 2.9837 16 14 10.1192 -0.3757 0.5398 17 1 11.2445 0.3830 -0.0628 18 1 10.6532 -1.5442 1.2844 19 1 9.2083 -0.8469 -0.5343 20 6 8.0402 5.2004 1.4522 21 6 7.6679 6.0123 2.6944 22 6 8.4384 7.3342 2.6896 23 6 7.9863 8.1837 1.5002 24 6 8.1622 8.0902 3.9908 25 6 4.2810 -0.0080 0.0002 26 6 3.5909 -1.2030 -0.0054 27 6 2.2015 -1.2029 -0.0056 28 7 1.5023 -2.4139 -0.0107 29 1 -0.3635 -0.0048 1.0276 30 1 -0.3633 -0.8876 -0.5181 31 1 -0.3633 0.8924 -0.5097 32 1 1.6572 2.1308 -0.0004 33 1 3.9356 3.1715 -0.4717 34 1 8.4971 3.1283 2.9796 35 1 7.0030 2.2249 2.6334 36 1 9.4931 -0.4017 3.3125 37 1 9.1110 4.9964 1.4590 38 1 7.7841 5.7674 0.5573 39 1 6.5972 6.2163 2.6877 40 1 7.9240 5.4453 3.5893 41 1 9.5062 7.1318 2.6065 42 1 8.5349 9.1255 1.4970 43 1 8.1831 7.6450 0.5733 44 1 6.9184 8.3860 1.5833 45 1 8.4843 7.4850 4.8381 46 1 8.7108 9.0321 3.9871 47 1 7.0943 8.2924 4.0737 48 1 5.3610 -0.0080 0.0006 49 1 4.1308 -2.1383 -0.0102 50 1 0.5322 -2.4138 -0.0100 51 1 1.9872 -3.2540 -0.0143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850813143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:31 Heat of formation + Delta-G solvation = -64.447421 kcal Electronic energy + Delta-G solvation = -31094.410151 eV Core-core repulsion = 26992.768721 eV Total energy + Delta-G solvation = -4101.641430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97319 -40.63806 -39.36668 -37.95726 -36.94202 -35.99412 -34.46372 -33.98138 -33.35329 -30.82939 -29.46250 -28.86629 -27.97915 -27.57715 -26.05073 -25.02777 -23.75862 -23.39615 -21.71375 -20.88830 -20.62455 -19.02547 -18.51054 -18.08665 -17.94751 -17.68835 -17.27550 -16.72428 -16.54039 -16.12438 -15.99120 -15.41679 -15.14584 -14.94635 -14.83729 -14.70835 -14.49123 -14.40268 -14.29968 -13.95993 -13.72676 -13.61880 -13.41046 -13.16648 -13.10353 -12.89721 -12.78065 -12.74132 -12.58086 -12.35602 -12.26280 -12.22530 -11.96561 -11.87838 -11.76738 -11.57475 -11.51308 -11.41169 -10.60973 -10.41869 -10.06792 -9.64957 -9.58554 -8.13414 -8.08522 -6.20492 0.28449 0.47656 0.81504 1.37446 1.40182 1.46354 1.53690 2.29325 2.41603 2.68776 2.92837 3.07209 3.21201 3.48970 3.93466 3.93912 3.96283 4.00933 4.07902 4.30205 4.37640 4.49895 4.54157 4.56463 4.65787 4.75556 4.77889 4.82744 4.90069 4.90289 4.93190 5.01809 5.05297 5.07762 5.13823 5.14840 5.28608 5.32775 5.37819 5.40350 5.48224 5.50370 5.55397 5.57688 5.67966 5.77347 6.01778 6.12346 6.23019 6.37528 6.61602 6.81744 6.89669 7.05958 7.18763 7.44811 8.95658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.003506 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.094445 B = 7983.305082 C =10575.108817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.153 4.153 3 C -0.091 4.091 4 C 0.071 3.929 5 N -0.640 5.640 6 C 0.482 3.518 7 O -0.475 6.475 8 C 0.505 3.495 9 O -0.558 6.558 10 N -0.565 5.565 11 C 0.252 3.748 12 C -0.515 4.515 13 H 0.043 0.957 14 C 0.024 3.976 15 N -0.921 5.921 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.112 3.888 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.191 4.191 27 C 0.205 3.795 28 N -0.865 5.865 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.423 0.577 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.104 0.896 49 H 0.126 0.874 50 H 0.408 0.592 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 4.359 -4.589 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.158 4.158 3 C -0.111 4.111 4 C -0.023 4.023 5 N -0.289 5.289 6 C 0.263 3.737 7 O -0.346 6.346 8 C 0.287 3.713 9 O -0.440 6.440 10 N -0.295 5.295 11 C 0.131 3.869 12 C -0.553 4.553 13 H 0.061 0.939 14 C -0.176 4.176 15 N -0.562 5.562 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.010 4.010 21 C -0.157 4.157 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.199 4.199 25 C -0.118 4.118 26 C -0.214 4.214 27 C 0.099 3.901 28 N -0.407 5.407 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.261 0.739 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.122 0.878 49 H 0.144 0.856 50 H 0.239 0.761 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.296 4.082 -4.290 15.474 hybrid contribution 0.795 -0.966 -0.539 1.362 sum -13.501 3.117 -4.829 14.673 Atomic orbital electron populations 1.20636 0.88305 1.03777 1.02840 1.19490 0.97502 0.90402 1.08395 1.20788 0.90486 0.99257 1.00574 1.17667 0.91603 0.84601 1.08446 1.42924 1.21815 1.13621 1.50564 1.20428 0.82499 0.89980 0.80773 1.90971 1.62371 1.38401 1.42886 1.19946 0.82617 0.88473 0.80225 1.90622 1.65899 1.38537 1.48929 1.48233 1.19916 1.14407 1.46908 1.19390 0.94546 0.81804 0.91116 1.21299 1.32339 1.07075 0.94633 0.93878 1.25487 0.97270 0.98444 0.96365 1.70011 1.45588 1.25689 1.14864 0.85770 0.78964 0.78749 0.79103 1.19163 1.20573 1.20677 1.21755 0.96178 0.83080 0.99970 1.21909 1.00381 0.96354 0.97064 1.21050 0.99886 0.93436 0.96606 1.21855 1.01275 0.99796 0.97249 1.21796 1.01782 1.00289 0.96069 1.21002 0.99879 0.92124 0.98807 1.20545 0.92984 0.97728 1.10156 1.17642 0.90391 0.87636 0.94385 1.42449 1.09379 1.04221 1.84675 0.90801 0.90551 0.90200 0.83351 0.73912 0.96299 0.94276 0.92860 0.90295 0.89677 0.92702 0.92722 0.90640 0.91130 0.93165 0.93079 0.92977 0.91094 0.92838 0.87799 0.85612 0.76067 0.76661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.57 71.24 0.68 -0.69 16 2 C -0.15 -3.46 5.89 -19.75 -0.12 -3.58 16 3 C -0.09 -2.35 9.61 22.39 0.22 -2.13 16 4 C 0.07 2.42 6.30 38.19 0.24 2.66 16 5 N -0.64 -22.63 5.32 -304.73 -1.62 -24.26 16 6 C 0.48 21.11 7.57 87.23 0.66 21.77 16 7 O -0.48 -24.46 9.57 -3.37 -0.03 -24.49 16 8 C 0.50 21.98 7.67 87.23 0.67 22.65 16 9 O -0.56 -23.34 16.04 -3.30 -0.05 -23.40 16 10 N -0.57 -25.12 2.47 -827.90 -2.05 -27.16 16 11 C 0.25 13.20 4.78 85.63 0.41 13.61 16 12 C -0.51 -29.07 7.79 25.60 0.20 -28.87 16 13 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 14 C 0.02 1.35 5.46 84.65 0.46 1.81 16 15 N -0.92 -55.21 13.29 21.45 0.28 -54.93 16 16 Si 0.95 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 20 C 0.11 4.09 5.15 86.38 0.44 4.53 16 21 C -0.12 -3.73 5.01 30.60 0.15 -3.57 16 22 C -0.09 -2.20 2.92 -10.79 -0.03 -2.24 16 23 C -0.14 -3.22 8.95 71.98 0.64 -2.58 16 24 C -0.14 -2.96 9.19 71.98 0.66 -2.29 16 25 C -0.10 -3.68 8.69 22.39 0.19 -3.48 16 26 C -0.19 -5.93 9.89 22.38 0.22 -5.71 16 27 C 0.21 5.02 6.74 38.19 0.26 5.28 16 28 N -0.86 -13.87 8.99 -51.26 -0.46 -14.33 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.78 6.54 -2.39 -0.02 0.77 16 31 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.42 12.63 8.30 -92.71 -0.77 11.86 16 34 H 0.02 1.03 8.02 -2.38 -0.02 1.01 16 35 H 0.04 2.29 5.84 -2.39 -0.01 2.27 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 38 H 0.08 2.99 5.78 -2.39 -0.01 2.98 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.20 6.56 -2.39 -0.02 1.18 16 44 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.10 4.76 6.24 -2.91 -0.02 4.74 16 49 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 50 H 0.41 4.47 6.82 -92.71 -0.63 3.84 16 51 H 0.40 5.46 8.84 -92.71 -0.82 4.64 16 Total: -1.00 -71.02 412.36 2.81 -68.21 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -1.25 Total: 35.70 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.97 Total: 17.17 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -3.85 Total: -120.67 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.09 Total: -47.89 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.02 2.81 -68.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850813143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.764 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds