Wall clock time and date at job start Wed Apr 1 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38242 * 120.00044 * 2 1 4 4 C 1.38233 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00589 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46994 * 90.00461 * 6 5 4 8 8 C 1.47012 * 110.99953 * 46.36748 * 7 6 5 9 9 C 1.53098 * 109.25868 * 182.39598 * 8 7 6 10 10 O 1.43019 * 109.25678 * 303.15003 * 9 8 7 11 11 C 1.43017 * 113.73695 * 58.66842 * 10 9 8 12 12 H 1.09006 * 109.53951 * 61.29232 * 11 10 9 13 13 C 1.53004 * 109.50840 * 181.39266 * 11 10 9 14 14 N 1.46499 * 109.47198 * 299.78779 * 13 11 10 15 15 C 1.34777 * 120.00065 * 179.97438 * 14 13 11 16 16 O 1.21593 * 119.99923 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00128 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99828 * 180.27942 * 17 15 14 19 19 C 1.50700 * 109.46769 * 179.72341 * 18 17 15 20 20 H 1.07997 * 120.00357 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99789 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00087 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46949 * 60.00023 * 23 21 19 25 25 H 1.48499 * 109.47367 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47219 * 300.00256 * 23 21 19 27 27 C 1.47013 * 111.00352 * 170.00525 * 7 6 5 28 28 C 1.38241 * 119.99648 * 0.26174 * 5 4 3 29 29 C 1.38234 * 119.99945 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47324 * 90.00121 * 1 2 3 31 31 H 1.08999 * 109.47207 * 210.00653 * 1 2 3 32 32 H 1.09007 * 109.47200 * 330.00368 * 1 2 3 33 33 H 1.08001 * 119.99948 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99956 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.46962 * 330.01045 * 6 5 4 36 36 H 1.08993 * 109.47520 * 210.00461 * 6 5 4 37 37 H 1.09001 * 109.50536 * 302.32479 * 8 7 6 38 38 H 1.08996 * 109.50761 * 62.45804 * 8 7 6 39 39 H 1.08998 * 109.50830 * 63.08224 * 9 8 7 40 40 H 1.08995 * 109.50780 * 183.22101 * 9 8 7 41 41 H 1.09000 * 109.47211 * 179.78090 * 13 11 10 42 42 H 1.09006 * 109.46815 * 59.78326 * 13 11 10 43 43 H 0.97000 * 120.00386 * 359.97438 * 14 13 11 44 44 H 0.97001 * 119.99727 * 359.97438 * 17 15 14 45 45 H 1.09004 * 109.46963 * 299.72135 * 18 17 15 46 46 H 1.08994 * 109.47567 * 59.72287 * 18 17 15 47 47 H 0.96999 * 120.00067 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.50338 * 57.66932 * 27 7 6 49 49 H 1.09005 * 109.50288 * 297.54673 * 27 7 6 50 50 H 1.08003 * 120.00123 * 179.71923 * 28 5 4 51 51 H 1.07999 * 120.00246 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0000 0.0005 7 7 6.2683 -0.0002 1.3855 8 6 5.5509 -0.9936 2.1978 9 6 6.0493 -0.9187 3.6435 10 8 7.4649 -1.1217 3.6655 11 6 8.1949 -0.1712 2.8850 12 1 8.0244 0.8311 3.2781 13 6 9.6884 -0.4975 2.9485 14 7 10.1438 -0.4329 4.3394 15 6 11.4333 -0.6859 4.6388 16 8 12.2188 -0.9673 3.7544 17 7 11.8521 -0.6270 5.9185 18 6 13.2551 -0.8960 6.2431 19 6 13.4618 -0.7592 7.7296 20 1 12.6313 -0.4977 8.3685 21 6 14.7113 -0.9681 8.2740 22 7 15.7227 -1.2861 7.4959 23 14 14.9677 -0.7979 10.1164 24 1 14.0991 -1.7691 10.8289 25 1 16.3896 -1.0718 10.4457 26 1 14.6181 0.5820 10.5395 27 6 7.7183 -0.2385 1.4318 28 6 3.5805 -1.1971 -0.0055 29 6 2.1981 -1.1972 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8901 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1324 0.0010 35 1 6.1420 0.8900 -0.5132 36 1 6.1420 -0.8899 -0.5133 37 1 4.4819 -0.7828 2.1701 38 1 5.7363 -1.9913 1.8001 39 1 5.8158 0.0617 4.0587 40 1 5.5616 -1.6918 4.2371 41 1 10.2439 0.2249 2.3503 42 1 9.8581 -1.5005 2.5568 43 1 9.5172 -0.2081 5.0449 44 1 11.2255 -0.4021 6.6240 45 1 13.5123 -1.9086 5.9322 46 1 13.8922 -0.1826 5.7206 47 1 16.6018 -1.4326 7.8788 48 1 8.2312 0.5234 0.8448 49 1 7.9383 -1.2242 1.0217 50 1 4.1205 -2.1325 -0.0101 51 1 1.6582 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:51 Heat of formation + Delta-G solvation = -75.197163 kcal Electronic energy + Delta-G solvation = -29418.707107 eV Core-core repulsion = 25316.599533 eV Total energy + Delta-G solvation = -4102.107574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26889 -40.74370 -39.97663 -37.16145 -36.27901 -35.67198 -34.34094 -33.83920 -32.50409 -31.80987 -30.22678 -29.39760 -28.07764 -26.19632 -25.00323 -24.54596 -23.62836 -23.14815 -21.95052 -21.55945 -21.24252 -19.75156 -18.13299 -17.75599 -17.48337 -17.31091 -16.91290 -16.57273 -16.54499 -16.33046 -16.14888 -15.80990 -15.63852 -15.34561 -15.16163 -14.83669 -14.61792 -14.46407 -14.38690 -14.28106 -13.99949 -13.64763 -13.50001 -13.40767 -13.16851 -12.90172 -12.79528 -12.71486 -12.65719 -12.38045 -12.29888 -12.21118 -11.83599 -11.79155 -11.57998 -11.47660 -11.24746 -10.77274 -10.66693 -10.26207 -9.80456 -9.61359 -9.55826 -9.27139 -8.26047 -6.42515 0.36188 0.51067 1.44762 1.49498 1.57382 1.86714 2.26516 2.41166 2.61803 2.67897 3.04908 3.08696 3.52671 3.68670 3.86079 3.87478 3.92752 3.98121 4.05966 4.10127 4.14280 4.21244 4.30656 4.41894 4.50789 4.57184 4.62259 4.63924 4.64781 4.72652 4.82359 4.83766 4.87801 4.90386 4.98201 4.99719 5.11162 5.20142 5.29093 5.29733 5.49443 5.50065 5.52577 5.68108 5.69999 5.72306 5.86848 5.87369 5.90050 6.12489 6.16860 6.28225 6.68861 7.26478 7.33023 7.74142 8.86142 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.001492 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.029010 B =18767.183778 C =19237.405109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.103 4.103 5 C -0.099 4.099 6 C 0.096 3.904 7 N -0.531 5.531 8 C 0.021 3.979 9 C 0.061 3.939 10 O -0.395 6.395 11 C 0.096 3.904 12 H 0.084 0.916 13 C 0.150 3.850 14 N -0.727 5.727 15 C 0.692 3.308 16 O -0.650 6.650 17 N -0.723 5.723 18 C 0.285 3.715 19 C -0.557 4.557 20 H 0.083 0.917 21 C 0.005 3.995 22 N -0.931 5.931 23 Si 0.987 3.013 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.262 1.262 27 C 0.030 3.970 28 C -0.116 4.116 29 C -0.131 4.131 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.410 0.590 44 H 0.404 0.596 45 H -0.015 1.015 46 H -0.013 1.013 47 H 0.269 0.731 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.122 0.878 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.015 4.824 -15.605 38.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.031 4.031 7 N -0.256 5.256 8 C -0.107 4.107 9 C -0.015 4.015 10 O -0.315 6.315 11 C 0.038 3.962 12 H 0.102 0.898 13 C 0.025 3.975 14 N -0.385 5.385 15 C 0.391 3.609 16 O -0.533 6.533 17 N -0.377 5.377 18 C 0.162 3.838 19 C -0.594 4.594 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.186 1.186 27 C -0.099 4.099 28 C -0.135 4.135 29 C -0.149 4.149 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.246 0.754 44 H 0.239 0.761 45 H 0.003 0.997 46 H 0.005 0.995 47 H 0.078 0.922 48 H 0.123 0.877 49 H 0.061 0.939 50 H 0.140 0.860 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -34.105 4.838 -16.109 38.027 hybrid contribution 0.265 -0.652 0.611 0.932 sum -33.840 4.185 -15.498 37.455 Atomic orbital electron populations 1.20841 0.89837 1.03516 1.02952 1.20257 0.97291 0.93128 0.98699 1.21300 0.94238 0.98352 1.01012 1.21189 0.94362 0.97896 0.98668 1.19748 0.94837 0.93652 1.01709 1.21108 0.90946 1.02335 0.88717 1.62347 1.03099 1.49024 1.11106 1.22846 0.99982 0.93622 0.94285 1.22818 0.80174 1.02859 0.95652 1.88050 1.19073 1.54158 1.70184 1.22247 0.89211 0.93457 0.91318 0.89772 1.21165 0.92171 1.02021 0.82107 1.44741 1.07580 1.75881 1.10257 1.16290 0.82907 0.78343 0.83348 1.90832 1.55774 1.58464 1.48218 1.45292 1.12644 1.73735 1.06015 1.18414 0.76627 0.93420 0.95362 1.21581 0.96423 1.49531 0.91903 0.89884 1.26063 0.95135 0.93894 1.04418 1.70139 1.01547 1.47147 1.38076 0.85184 0.77183 0.79362 0.77317 1.18766 1.21020 1.18635 1.22660 0.88896 1.01844 0.96497 1.21194 0.94658 0.97596 1.00051 1.21235 0.94051 0.98380 1.01261 0.90509 0.90914 0.90828 0.84694 0.85165 0.88707 0.93703 0.88752 0.94546 0.91767 0.87200 0.89933 0.92841 0.75358 0.76074 0.99738 0.99500 0.92245 0.87658 0.93935 0.86049 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 71.24 0.71 -0.08 16 2 C -0.09 -1.06 5.88 -19.87 -0.12 -1.18 16 3 C -0.13 -1.54 9.70 22.27 0.22 -1.32 16 4 C -0.10 -1.32 9.70 22.27 0.22 -1.10 16 5 C -0.10 -1.33 4.13 -19.87 -0.08 -1.41 16 6 C 0.10 1.26 5.44 85.56 0.47 1.72 16 7 N -0.53 -8.07 4.87 -899.81 -4.38 -12.46 16 8 C 0.02 0.31 4.66 86.31 0.40 0.71 16 9 C 0.06 0.99 7.01 72.01 0.50 1.49 16 10 O -0.40 -8.59 10.23 -148.98 -1.52 -10.12 16 11 C 0.10 1.89 2.89 30.63 0.09 1.98 16 12 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 13 C 0.15 3.97 5.37 86.38 0.46 4.44 16 14 N -0.73 -22.79 5.45 -478.52 -2.61 -25.40 16 15 C 0.69 30.29 8.57 179.05 1.53 31.83 16 16 O -0.65 -34.73 16.34 -4.01 -0.07 -34.79 16 17 N -0.72 -32.64 5.55 -482.30 -2.68 -35.32 16 18 C 0.29 16.29 5.43 85.63 0.46 16.75 16 19 C -0.56 -31.05 9.28 25.60 0.24 -30.81 16 20 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 21 C 0.00 0.25 5.46 84.66 0.46 0.72 16 22 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 23 Si 0.99 42.92 29.54 68.60 2.03 44.94 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 C 0.03 0.49 4.91 86.31 0.42 0.91 16 28 C -0.12 -1.50 7.88 22.27 0.18 -1.33 16 29 C -0.13 -1.56 9.70 22.27 0.22 -1.34 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.41 8.09 -2.39 -0.02 0.39 16 32 H 0.07 0.41 8.09 -2.38 -0.02 0.39 16 33 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 36 H 0.04 0.60 8.02 -2.39 -0.02 0.58 16 37 H 0.09 1.37 5.93 -2.39 -0.01 1.36 16 38 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.41 10.52 8.37 -92.71 -0.78 9.74 16 44 H 0.40 15.18 8.34 -92.71 -0.77 14.41 16 45 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 51 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -75.83 415.21 -3.18 -79.01 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.62 Total: 28.89 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 6.38 Total: 21.98 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -9.39 Total: -129.92 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.59 Total: -44.91 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -75.83 -3.18 -79.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.815 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds