Wall clock time and date at job start Wed Apr 1 2020 04:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 120.00075 * 2 1 4 4 C 1.38217 * 119.99894 * 180.02562 * 3 2 1 5 5 C 1.38250 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00386 * 359.96081 * 5 4 3 7 7 C 1.50701 * 120.00374 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47223 * 89.99571 * 7 6 5 9 9 C 1.47018 * 111.00011 * 293.95734 * 8 7 6 10 10 C 1.53094 * 109.25650 * 182.39433 * 9 8 7 11 11 O 1.43016 * 109.25705 * 303.14574 * 10 9 8 12 12 C 1.43016 * 113.73586 * 58.67308 * 11 10 9 13 13 H 1.09004 * 109.50898 * 61.30857 * 12 11 10 14 14 C 1.53004 * 109.50796 * 181.39016 * 12 11 10 15 15 N 1.46499 * 109.47198 * 299.91628 * 14 12 11 16 16 C 1.34777 * 120.00065 * 179.97438 * 15 14 12 17 17 O 1.21593 * 119.99923 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00128 * 180.02562 * 16 15 14 19 19 C 1.46498 * 119.99828 * 180.27942 * 18 16 15 20 20 C 1.50700 * 109.46769 * 179.72341 * 19 18 16 21 21 H 1.07997 * 120.00357 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46949 * 60.00023 * 24 22 20 26 26 H 1.48499 * 109.47367 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47219 * 300.00256 * 24 22 20 28 28 C 1.47015 * 110.99611 * 57.63451 * 8 7 6 29 29 C 1.38221 * 119.99711 * 180.21068 * 2 1 3 30 30 H 1.09001 * 109.47075 * 89.99829 * 1 2 3 31 31 H 1.09000 * 109.47096 * 210.00047 * 1 2 3 32 32 H 1.09000 * 109.47165 * 329.99942 * 1 2 3 33 33 H 1.08005 * 119.99885 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.99932 * 179.97438 * 4 3 2 35 35 H 1.08005 * 120.00109 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46905 * 329.99697 * 7 6 5 37 37 H 1.08993 * 109.47035 * 209.99921 * 7 6 5 38 38 H 1.09001 * 109.50788 * 62.45248 * 9 8 7 39 39 H 1.09001 * 109.50365 * 302.32635 * 9 8 7 40 40 H 1.09003 * 109.50441 * 183.21429 * 10 9 8 41 41 H 1.08996 * 109.50998 * 63.08074 * 10 9 8 42 42 H 1.09000 * 109.47211 * 179.90939 * 14 12 11 43 43 H 1.09006 * 109.46815 * 59.91175 * 14 12 11 44 44 H 0.97000 * 120.00386 * 359.97438 * 15 14 12 45 45 H 0.97001 * 119.99727 * 359.97438 * 18 16 15 46 46 H 1.09004 * 109.46963 * 299.72135 * 19 18 16 47 47 H 1.08994 * 109.47567 * 59.72287 * 19 18 16 48 48 H 0.96999 * 120.00067 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.54664 * 57.69298 * 28 8 7 50 50 H 1.08999 * 109.47351 * 297.56024 * 28 8 7 51 51 H 1.07998 * 120.00027 * 0.02637 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5022 0.0014 8 7 4.5798 -2.9251 1.3866 9 6 5.4917 -1.9945 2.0677 10 6 5.7670 -2.5039 3.4849 11 8 4.5270 -2.6540 4.1815 12 6 3.6150 -3.5540 3.5460 13 1 4.0595 -4.5481 3.4969 14 6 2.3143 -3.6152 4.3495 15 7 2.6000 -4.0895 5.7058 16 6 1.5986 -4.2231 6.5979 17 8 0.4579 -3.9504 6.2768 18 7 1.8614 -4.6590 7.8458 19 6 0.7720 -4.8101 8.8135 20 6 1.3275 -5.3144 10.1205 21 1 2.3861 -5.5039 10.2202 22 6 0.4843 -5.5339 11.1891 23 7 -0.8049 -5.3037 11.0676 24 14 1.1726 -6.1597 12.8089 25 1 2.1686 -5.1898 13.3312 26 1 0.0686 -6.3115 13.7904 27 1 1.8282 -7.4746 12.5932 28 6 3.3178 -3.0563 2.1291 29 6 2.1981 -1.1971 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 0.0004 34 1 4.1205 2.1325 -0.0010 35 1 5.3517 -0.0001 -0.0014 36 1 5.2862 -2.3722 -0.5131 37 1 3.7447 -3.2621 -0.5114 38 1 5.0328 -1.0071 2.1185 39 1 6.4289 -1.9330 1.5146 40 1 6.3968 -1.7880 4.0131 41 1 6.2743 -3.4672 3.4333 42 1 1.6192 -4.3000 3.8638 43 1 1.8704 -2.6208 4.3983 44 1 3.5098 -4.3075 5.9619 45 1 2.7713 -4.8770 8.1018 46 1 0.2901 -3.8452 8.9717 47 1 0.0416 -5.5225 8.4302 48 1 -1.3982 -5.4585 11.8192 49 1 2.6685 -3.7696 1.6215 50 1 2.8238 -2.0860 2.1803 51 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875541275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:01 Heat of formation + Delta-G solvation = -51.279952 kcal Electronic energy + Delta-G solvation = -30255.152988 eV Core-core repulsion = 26154.082543 eV Total energy + Delta-G solvation = -4101.070446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -40.67234 -39.43990 -38.82353 -36.36852 -34.69415 -33.89895 -33.09652 -32.31735 -31.75066 -31.40534 -28.68338 -27.59629 -27.12077 -25.91961 -24.55116 -23.12460 -22.37706 -21.89293 -21.20449 -20.42664 -19.90997 -18.01182 -16.89347 -16.81954 -16.54018 -16.15597 -15.90338 -15.68661 -15.51964 -15.22381 -14.97491 -14.75418 -14.61992 -14.33440 -14.05317 -13.87261 -13.52233 -13.36309 -13.12915 -13.01075 -12.85568 -12.68105 -12.38931 -12.22884 -12.16299 -11.89249 -11.72397 -11.58943 -11.57115 -11.36501 -11.26273 -10.93105 -10.83106 -10.75684 -10.24923 -9.90156 -9.33612 -9.31921 -9.15856 -8.96977 -8.76705 -8.69803 -8.59120 -7.66796 -6.09850 -4.16025 0.95772 1.03594 3.18940 3.29778 3.33950 3.35509 3.41756 3.53062 3.67407 4.05998 4.32782 4.36666 4.38303 4.54373 4.59604 4.65786 4.71170 4.75616 4.85310 4.95348 4.99492 5.02295 5.10317 5.16573 5.25505 5.25987 5.29010 5.29563 5.34195 5.35429 5.46006 5.50875 5.52179 5.60059 5.71018 5.80204 5.81511 5.98486 6.09465 6.15838 6.26244 6.51082 6.55068 6.65875 6.89500 7.01492 7.21231 7.59672 7.63120 7.64533 7.98836 8.12238 8.83277 9.03487 9.41116 9.55729 11.00427 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.001936 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.664677 B =14457.994977 C =15458.895785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.121 4.121 7 C 0.093 3.907 8 N -0.523 5.523 9 C 0.011 3.989 10 C 0.064 3.936 11 O -0.373 6.373 12 C 0.084 3.916 13 H 0.073 0.927 14 C 0.153 3.847 15 N -0.751 5.751 16 C 0.694 3.306 17 O -0.604 6.604 18 N -0.730 5.730 19 C 0.268 3.732 20 C -0.541 4.541 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.886 5.886 24 Si 0.904 3.096 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 C 0.022 3.978 29 C -0.107 4.107 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.395 0.605 45 H 0.386 0.614 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.266 0.734 49 H 0.088 0.912 50 H 0.056 0.944 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.780 9.897 -27.535 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.123 4.123 7 C -0.035 4.035 8 N -0.246 5.246 9 C -0.117 4.117 10 C -0.013 4.013 11 O -0.292 6.292 12 C 0.025 3.975 13 H 0.091 0.909 14 C 0.027 3.973 15 N -0.409 5.409 16 C 0.393 3.607 17 O -0.484 6.484 18 N -0.382 5.382 19 C 0.146 3.854 20 C -0.579 4.579 21 H 0.080 0.920 22 C -0.141 4.141 23 N -0.524 5.524 24 Si 0.732 3.268 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.106 4.106 29 C -0.126 4.126 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.228 0.772 45 H 0.218 0.782 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.686 9.742 -27.513 31.824 hybrid contribution 0.878 0.300 0.844 1.255 sum 13.565 10.042 -26.669 31.561 Atomic orbital electron populations 1.20831 0.90956 1.03302 1.02350 1.19979 0.96303 0.93119 0.98928 1.21080 0.94305 0.97630 1.00735 1.21130 0.94367 0.97991 0.99988 1.21014 0.99551 0.92072 1.00817 1.20592 0.94398 0.96396 1.00883 1.21267 0.99887 0.92148 0.90151 1.62613 1.12967 1.47165 1.01806 1.22896 0.97416 0.95336 0.96047 1.22647 0.86474 1.01206 0.91006 1.88090 1.26435 1.65392 1.49242 1.22421 0.90658 0.93529 0.90847 0.90891 1.20983 0.93784 1.00525 0.81959 1.44946 1.10024 1.73905 1.11983 1.16127 0.84397 0.78949 0.81187 1.90863 1.20176 1.58225 1.79105 1.45691 1.12700 1.69228 1.10558 1.18958 0.84478 0.97131 0.84802 1.21207 0.94488 1.46037 0.96214 0.92000 1.24950 0.94749 0.95311 0.99075 1.69972 1.02908 1.47538 1.31945 0.86469 0.78475 0.79306 0.82594 1.20112 1.21122 1.20111 1.22768 0.91752 1.01931 0.94198 1.20987 0.93455 0.97730 1.00427 0.91124 0.91157 0.91381 0.86131 0.86114 0.86373 0.89661 0.89490 0.93061 0.89796 0.88415 0.92279 0.90486 0.91423 0.77199 0.78163 0.95796 0.95788 0.92460 0.89339 0.92551 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -0.89 8.03 -39.59 -0.32 -1.21 16 6 C -0.12 -0.95 4.01 -104.62 -0.42 -1.37 16 7 C 0.09 0.63 5.58 -4.97 -0.03 0.61 16 8 N -0.52 -4.25 4.93 -235.75 -1.16 -5.42 16 9 C 0.01 0.09 5.13 -3.71 -0.02 0.07 16 10 C 0.06 0.55 7.01 37.21 0.26 0.81 16 11 O -0.37 -4.39 10.22 -35.23 -0.36 -4.75 16 12 C 0.08 0.91 2.89 -26.68 -0.08 0.83 16 13 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 14 C 0.15 2.12 5.37 -4.04 -0.02 2.10 16 15 N -0.75 -12.17 5.45 -65.22 -0.36 -12.53 16 16 C 0.69 15.10 8.57 -86.92 -0.74 14.35 16 17 O -0.60 -15.69 16.34 5.28 0.09 -15.60 16 18 N -0.73 -16.39 5.55 -66.41 -0.37 -16.76 16 19 C 0.27 7.40 5.43 -5.19 -0.03 7.37 16 20 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 21 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.02 0.21 4.15 -3.71 -0.02 0.19 16 29 C -0.11 -0.90 7.60 -39.58 -0.30 -1.20 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.72 8.03 -52.48 -0.42 0.30 16 36 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 37 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.05 0.46 6.33 -51.93 -0.33 0.14 16 39 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.39 5.45 8.37 -40.82 -0.34 5.11 16 45 H 0.39 7.47 8.34 -40.82 -0.34 7.13 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.06 0.60 6.23 -51.93 -0.32 0.28 16 51 H 0.12 0.90 8.03 -52.49 -0.42 0.48 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -34.72 411.84 -11.86 -46.59 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.46 Total: 7.59 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.16 Total: 4.34 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -1.15 Total: -60.60 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.27 Total: -20.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.72 -11.86 -46.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.692 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds