Wall clock time and date at job start Wed Apr 1 2020 04:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 120.00075 * 2 1 4 4 C 1.38217 * 119.99894 * 180.02562 * 3 2 1 5 5 C 1.38250 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00386 * 359.96081 * 5 4 3 7 7 C 1.50701 * 120.00374 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47223 * 89.99571 * 7 6 5 9 9 C 1.47018 * 111.00011 * 293.95734 * 8 7 6 10 10 C 1.53094 * 109.25650 * 182.39433 * 9 8 7 11 11 O 1.43016 * 109.25705 * 303.14574 * 10 9 8 12 12 C 1.43016 * 113.73586 * 58.67308 * 11 10 9 13 13 H 1.09004 * 109.50898 * 61.30857 * 12 11 10 14 14 C 1.53004 * 109.50796 * 181.39016 * 12 11 10 15 15 N 1.46499 * 109.47198 * 299.91628 * 14 12 11 16 16 C 1.34777 * 120.00065 * 179.97438 * 15 14 12 17 17 O 1.21593 * 119.99923 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00128 * 180.02562 * 16 15 14 19 19 C 1.46498 * 119.99828 * 180.27942 * 18 16 15 20 20 C 1.50700 * 109.46769 * 179.72341 * 19 18 16 21 21 H 1.07997 * 120.00357 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46949 * 60.00023 * 24 22 20 26 26 H 1.48499 * 109.47367 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47219 * 300.00256 * 24 22 20 28 28 C 1.47015 * 110.99611 * 57.63451 * 8 7 6 29 29 C 1.38221 * 119.99711 * 180.21068 * 2 1 3 30 30 H 1.09001 * 109.47075 * 89.99829 * 1 2 3 31 31 H 1.09000 * 109.47096 * 210.00047 * 1 2 3 32 32 H 1.09000 * 109.47165 * 329.99942 * 1 2 3 33 33 H 1.08005 * 119.99885 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.99932 * 179.97438 * 4 3 2 35 35 H 1.08005 * 120.00109 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46905 * 329.99697 * 7 6 5 37 37 H 1.08993 * 109.47035 * 209.99921 * 7 6 5 38 38 H 1.09001 * 109.50788 * 62.45248 * 9 8 7 39 39 H 1.09001 * 109.50365 * 302.32635 * 9 8 7 40 40 H 1.09003 * 109.50441 * 183.21429 * 10 9 8 41 41 H 1.08996 * 109.50998 * 63.08074 * 10 9 8 42 42 H 1.09000 * 109.47211 * 179.90939 * 14 12 11 43 43 H 1.09006 * 109.46815 * 59.91175 * 14 12 11 44 44 H 0.97000 * 120.00386 * 359.97438 * 15 14 12 45 45 H 0.97001 * 119.99727 * 359.97438 * 18 16 15 46 46 H 1.09004 * 109.46963 * 299.72135 * 19 18 16 47 47 H 1.08994 * 109.47567 * 59.72287 * 19 18 16 48 48 H 0.96999 * 120.00067 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.54664 * 57.69298 * 28 8 7 50 50 H 1.08999 * 109.47351 * 297.56024 * 28 8 7 51 51 H 1.07998 * 120.00027 * 0.02637 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5022 0.0014 8 7 4.5798 -2.9251 1.3866 9 6 5.4917 -1.9945 2.0677 10 6 5.7670 -2.5039 3.4849 11 8 4.5270 -2.6540 4.1815 12 6 3.6150 -3.5540 3.5460 13 1 4.0595 -4.5481 3.4969 14 6 2.3143 -3.6152 4.3495 15 7 2.6000 -4.0895 5.7058 16 6 1.5986 -4.2231 6.5979 17 8 0.4579 -3.9504 6.2768 18 7 1.8614 -4.6590 7.8458 19 6 0.7720 -4.8101 8.8135 20 6 1.3275 -5.3144 10.1205 21 1 2.3861 -5.5039 10.2202 22 6 0.4843 -5.5339 11.1891 23 7 -0.8049 -5.3037 11.0676 24 14 1.1726 -6.1597 12.8089 25 1 2.1686 -5.1898 13.3312 26 1 0.0686 -6.3115 13.7904 27 1 1.8282 -7.4746 12.5932 28 6 3.3178 -3.0563 2.1291 29 6 2.1981 -1.1971 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 0.0004 34 1 4.1205 2.1325 -0.0010 35 1 5.3517 -0.0001 -0.0014 36 1 5.2862 -2.3722 -0.5131 37 1 3.7447 -3.2621 -0.5114 38 1 5.0328 -1.0071 2.1185 39 1 6.4289 -1.9330 1.5146 40 1 6.3968 -1.7880 4.0131 41 1 6.2743 -3.4672 3.4333 42 1 1.6192 -4.3000 3.8638 43 1 1.8704 -2.6208 4.3983 44 1 3.5098 -4.3075 5.9619 45 1 2.7713 -4.8770 8.1018 46 1 0.2901 -3.8452 8.9717 47 1 0.0416 -5.5225 8.4302 48 1 -1.3982 -5.4585 11.8192 49 1 2.6685 -3.7696 1.6215 50 1 2.8238 -2.0860 2.1803 51 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:58 Heat of formation + Delta-G solvation = -76.812915 kcal Electronic energy + Delta-G solvation = -30256.260181 eV Core-core repulsion = 26154.082543 eV Total energy + Delta-G solvation = -4102.177638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39503 -40.78894 -39.87212 -37.12736 -36.28739 -35.68528 -34.34610 -33.68758 -32.54495 -32.31035 -29.63237 -29.04769 -27.96144 -27.03444 -25.23680 -24.65242 -23.57229 -22.73543 -21.99966 -21.77821 -20.91489 -19.76785 -18.12391 -17.70890 -17.53910 -17.30213 -17.14268 -16.66280 -16.40163 -16.31554 -16.18214 -15.87520 -15.78239 -15.52645 -14.96556 -14.72242 -14.62679 -14.50357 -14.38190 -14.07790 -14.00639 -13.68564 -13.58697 -13.31468 -13.14964 -12.89856 -12.80983 -12.76349 -12.66155 -12.34425 -12.21888 -12.19354 -12.07506 -11.84647 -11.55413 -11.48342 -11.25591 -10.77926 -10.65966 -10.27700 -9.75926 -9.57887 -9.56216 -9.40887 -8.26621 -6.43135 0.36519 0.44095 1.44248 1.49170 1.57008 1.85606 2.25330 2.40761 2.66397 2.71685 2.96111 3.07935 3.53352 3.74342 3.80395 3.87854 3.89973 3.98815 4.03643 4.09885 4.20123 4.23710 4.38007 4.44280 4.47290 4.50827 4.59235 4.64214 4.66008 4.75310 4.78064 4.83932 4.86179 4.92909 4.94893 5.04997 5.10288 5.14524 5.25411 5.28720 5.48830 5.50884 5.51732 5.56382 5.66426 5.69150 5.86624 5.88473 5.93690 6.09060 6.19262 6.27326 6.68227 7.25700 7.32154 7.73039 8.85590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.001936 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.664677 B =14457.994977 C =15458.895785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.125 4.125 7 C 0.095 3.905 8 N -0.521 5.521 9 C 0.014 3.986 10 C 0.059 3.941 11 O -0.398 6.398 12 C 0.096 3.904 13 H 0.086 0.914 14 C 0.151 3.849 15 N -0.727 5.727 16 C 0.692 3.308 17 O -0.650 6.650 18 N -0.723 5.723 19 C 0.286 3.714 20 C -0.556 4.556 21 H 0.083 0.917 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.987 3.013 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.261 1.261 28 C 0.029 3.971 29 C -0.121 4.121 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.411 0.589 45 H 0.404 0.596 46 H -0.016 1.016 47 H -0.013 1.013 48 H 0.269 0.731 49 H 0.099 0.901 50 H 0.039 0.961 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.858 9.304 -27.837 33.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.101 4.101 3 C -0.152 4.152 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.127 4.127 7 C -0.032 4.032 8 N -0.243 5.243 9 C -0.114 4.114 10 C -0.017 4.017 11 O -0.317 6.317 12 C 0.037 3.963 13 H 0.104 0.896 14 C 0.026 3.974 15 N -0.384 5.384 16 C 0.391 3.609 17 O -0.533 6.533 18 N -0.377 5.377 19 C 0.163 3.837 20 C -0.594 4.594 21 H 0.102 0.898 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.810 3.190 25 H -0.187 1.187 26 H -0.210 1.210 27 H -0.186 1.186 28 C -0.100 4.100 29 C -0.140 4.140 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.247 0.753 45 H 0.240 0.760 46 H 0.002 0.998 47 H 0.005 0.995 48 H 0.078 0.922 49 H 0.117 0.883 50 H 0.057 0.943 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.856 9.153 -27.866 33.342 hybrid contribution -0.066 0.552 0.839 1.006 sum 15.790 9.704 -27.027 32.772 Atomic orbital electron populations 1.20837 0.90408 1.03126 1.02953 1.20229 0.97026 0.93515 0.99342 1.21317 0.94891 0.98011 1.01022 1.21415 0.94392 0.98950 0.99657 1.21266 1.00486 0.91915 1.00361 1.20746 0.94250 0.97082 1.00574 1.21341 1.00719 0.91711 0.89440 1.62645 1.12108 1.47359 1.02224 1.22911 0.98168 0.94399 0.95932 1.22860 0.85300 1.02170 0.91414 1.88048 1.27714 1.65628 1.50339 1.22251 0.89001 0.94206 0.90793 0.89633 1.21137 0.96016 0.99364 0.80852 1.44730 1.09507 1.72225 1.11911 1.16291 0.84677 0.78498 0.81417 1.90831 1.22541 1.60028 1.79899 1.45296 1.12426 1.69668 1.10319 1.18406 0.85145 0.93929 0.86260 1.21576 0.95627 1.46017 0.96146 0.89849 1.26089 0.94900 0.95130 1.03569 1.70141 1.04728 1.48605 1.33446 0.85173 0.77790 0.79226 0.76794 1.18730 1.21038 1.18580 1.22651 0.92559 1.01239 0.93586 1.21152 0.94060 0.97882 1.00857 0.90119 0.91613 0.91241 0.85184 0.84521 0.84704 0.87996 0.88880 0.94421 0.87450 0.87202 0.91314 0.90128 0.93365 0.75324 0.76046 0.99819 0.99531 0.92231 0.88314 0.94266 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 10.01 71.24 0.71 -0.98 16 2 C -0.10 -1.74 5.88 -19.86 -0.12 -1.86 16 3 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 4 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 5 C -0.12 -1.69 8.03 22.27 0.18 -1.51 16 6 C -0.12 -1.82 4.01 -19.86 -0.08 -1.90 16 7 C 0.09 1.09 5.58 85.56 0.48 1.57 16 8 N -0.52 -7.30 4.93 -899.78 -4.44 -11.74 16 9 C 0.01 0.18 5.13 86.31 0.44 0.62 16 10 C 0.06 0.87 7.01 72.01 0.50 1.38 16 11 O -0.40 -8.75 10.22 -148.98 -1.52 -10.28 16 12 C 0.10 1.94 2.89 30.63 0.09 2.03 16 13 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 14 C 0.15 4.17 5.37 86.38 0.46 4.63 16 15 N -0.73 -23.18 5.45 -478.52 -2.61 -25.79 16 16 C 0.69 30.62 8.57 179.05 1.53 32.15 16 17 O -0.65 -35.08 16.34 -4.01 -0.07 -35.14 16 18 N -0.72 -32.88 5.55 -482.30 -2.68 -35.56 16 19 C 0.29 16.40 5.43 85.63 0.46 16.87 16 20 C -0.56 -31.08 9.28 25.60 0.24 -30.84 16 21 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 22 C 0.00 0.15 5.46 84.66 0.46 0.61 16 23 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 24 Si 0.99 43.00 29.54 68.60 2.03 45.03 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 28 C 0.03 0.50 4.15 86.31 0.36 0.85 16 29 C -0.12 -2.00 7.60 22.27 0.17 -1.83 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.14 1.34 8.03 -2.91 -0.02 1.31 16 36 H 0.10 0.86 8.05 -2.39 -0.02 0.84 16 37 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 38 H 0.04 0.62 6.33 -2.39 -0.02 0.60 16 39 H 0.11 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.41 10.68 8.37 -92.71 -0.78 9.90 16 45 H 0.40 15.27 8.34 -92.71 -0.77 14.50 16 46 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 47 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.04 0.83 6.23 -2.39 -0.01 0.82 16 51 H 0.12 1.86 8.03 -2.91 -0.02 1.84 16 Total: -1.00 -77.25 411.84 -3.28 -80.53 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.62 Total: 31.66 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.34 Total: 18.19 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -9.44 Total: -129.99 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.59 Total: -45.42 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.25 -3.28 -80.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.718 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds