Wall clock time and date at job start Wed Apr 1 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35986 * 116.99460 * 2 1 4 4 C 1.38542 * 120.08501 * 0.02562 * 3 2 1 5 5 C 1.38253 * 120.01376 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.17362 * 359.67660 * 5 4 3 7 7 C 1.38206 * 120.16424 * 0.60002 * 6 5 4 8 8 C 1.50700 * 120.01081 * 179.69679 * 7 6 5 9 9 C 1.38713 * 119.98369 * 359.42451 * 7 6 5 10 10 N 1.40163 * 120.08816 * 180.25476 * 9 7 6 11 11 C 1.34773 * 120.00264 * 130.49527 * 10 9 7 12 12 O 1.21596 * 119.99926 * 6.06439 * 11 10 9 13 13 N 1.34777 * 120.00077 * 186.06573 * 11 10 9 14 14 C 1.46968 * 120.59022 * 185.35209 * 13 11 10 15 15 C 1.53372 * 108.63399 * 235.20246 * 14 13 11 16 16 H 1.08998 * 109.60889 * 70.32595 * 15 14 13 17 17 C 1.52998 * 109.60849 * 190.83492 * 15 14 13 18 18 N 1.46968 * 108.63492 * 310.57869 * 15 14 13 19 19 C 1.36937 * 120.59362 * 235.24480 * 18 15 14 20 20 H 1.07996 * 119.99934 * 126.37867 * 19 18 15 21 21 C 1.38816 * 120.00206 * 306.38380 * 19 18 15 22 22 N 1.31617 * 120.00026 * 342.11210 * 21 19 18 23 23 Si 1.86797 * 119.99936 * 162.10664 * 21 19 18 24 24 H 1.48498 * 109.47161 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47170 * 120.00259 * 23 21 19 26 26 H 1.48500 * 109.47349 * 240.00147 * 23 21 19 27 27 C 1.46961 * 118.81035 * 55.22747 * 18 15 14 28 28 H 1.09005 * 109.61238 * 64.51732 * 27 18 15 29 29 C 1.53003 * 109.60804 * 184.85522 * 27 18 15 30 30 C 1.46963 * 120.59755 * 5.07456 * 13 11 10 31 31 H 1.09001 * 109.47018 * 60.00766 * 1 2 3 32 32 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47188 * 300.00334 * 1 2 3 34 34 H 1.07997 * 119.99145 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.91039 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.91978 * 180.29555 * 6 5 4 37 37 H 1.08997 * 109.47542 * 269.73121 * 8 7 6 38 38 H 1.08998 * 109.46997 * 149.72393 * 8 7 6 39 39 H 1.09009 * 109.46907 * 29.72901 * 8 7 6 40 40 H 0.97003 * 119.99871 * 310.48757 * 10 9 7 41 41 H 1.08998 * 109.61596 * 354.95003 * 14 13 11 42 42 H 1.09002 * 109.60843 * 115.28841 * 14 13 11 43 43 H 1.09001 * 109.47399 * 68.69154 * 17 15 14 44 44 H 1.09006 * 109.46866 * 188.68433 * 17 15 14 45 45 H 1.08996 * 109.47093 * 308.68384 * 17 15 14 46 46 H 0.97000 * 120.00369 * 185.05035 * 22 21 19 47 47 H 1.09004 * 109.47196 * 63.65003 * 29 27 18 48 48 H 1.08996 * 109.47232 * 183.64592 * 29 27 18 49 49 H 1.08999 * 109.47297 * 303.64853 * 29 27 18 50 50 H 1.08993 * 109.61089 * 244.54042 * 30 13 11 51 51 H 1.09001 * 109.60718 * 5.05266 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3031 3.6808 0.0057 7 6 4.0613 2.5253 -0.0006 8 6 5.5659 2.6111 -0.0013 9 6 3.4372 1.2865 -0.0006 10 7 4.2040 0.1133 -0.0015 11 6 3.9390 -0.8658 0.8859 12 8 2.9681 -0.7808 1.6130 13 7 4.7501 -1.9391 0.9675 14 6 4.4110 -3.0678 1.8456 15 6 5.5861 -3.3170 2.7992 16 1 5.6516 -2.5018 3.5198 17 6 5.3779 -4.6420 3.5353 18 7 6.8252 -3.3798 2.0114 19 6 7.6488 -4.4706 2.0936 20 1 7.9438 -4.9934 1.1959 21 6 8.1045 -4.9046 3.3310 22 7 8.0522 -4.0995 4.3709 23 14 8.7918 -6.6312 3.5201 24 1 8.7412 -7.3303 2.2110 25 1 10.1998 -6.5552 3.9861 26 1 7.9814 -7.3805 4.5136 27 6 7.1641 -2.2510 1.1334 28 1 7.3421 -1.3599 1.7354 29 6 8.4213 -2.5863 0.3284 30 6 5.9863 -2.0044 0.1755 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2148 2.3195 0.0005 35 1 1.3339 4.5112 0.0000 36 1 3.7902 4.6447 0.0101 37 1 5.9282 2.6320 -1.0291 38 1 5.9795 1.7432 0.5122 39 1 5.8782 3.5203 0.5126 40 1 4.9255 0.0060 -0.6410 41 1 3.5172 -2.8278 2.4213 42 1 4.2301 -3.9582 1.2434 43 1 5.4745 -5.4681 2.8307 44 1 6.1281 -4.7438 4.3195 45 1 4.3829 -4.6581 3.9800 46 1 8.4370 -4.3752 5.2176 47 1 8.2187 -3.4346 -0.3254 48 1 8.7079 -1.7240 -0.2737 49 1 9.2330 -2.8390 1.0106 50 1 5.9180 -2.8215 -0.5426 51 1 6.1330 -1.0618 -0.3520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879383329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:38 Heat of formation + Delta-G solvation = 6.583491 kcal Electronic energy + Delta-G solvation = -32577.764453 eV Core-core repulsion = 28479.203154 eV Total energy + Delta-G solvation = -4098.561298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76337 -39.35285 -37.67680 -37.22245 -34.57555 -34.11868 -32.72739 -32.08584 -31.26005 -29.36746 -27.70431 -27.47158 -26.60492 -26.08390 -25.40263 -23.78259 -22.30472 -21.23037 -20.35482 -20.10275 -19.14506 -18.17200 -17.58809 -16.78432 -16.25328 -16.08721 -15.52161 -15.11292 -15.00241 -14.65935 -14.42960 -14.25699 -14.01660 -13.82173 -13.71376 -13.62058 -13.51058 -12.94244 -12.57672 -12.34131 -12.20647 -12.01215 -11.91341 -11.65412 -11.57755 -11.41407 -11.35423 -11.07968 -10.91162 -10.88549 -10.82987 -10.52112 -10.47707 -10.29947 -10.00669 -9.86863 -9.82548 -9.67393 -9.42499 -8.46029 -8.30723 -7.98500 -7.71973 -6.32520 -5.80127 -3.56078 1.22945 1.46399 2.98400 3.28774 3.39248 3.40070 3.41135 3.58227 3.81838 4.20868 4.39793 4.75223 4.82281 5.02719 5.13803 5.18698 5.21764 5.23841 5.24870 5.27948 5.51317 5.52917 5.58377 5.66085 5.69344 5.70612 5.88640 6.00500 6.04872 6.20764 6.23277 6.29971 6.31652 6.34844 6.40430 6.47391 6.51088 6.64158 6.67005 6.85818 6.87713 6.94433 7.02632 7.04988 7.21171 7.38459 7.53934 7.57321 7.74640 7.90656 8.32386 8.59240 9.04487 9.17135 9.69691 10.47259 11.15330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.003045 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.776772 B = 9192.528738 C =10032.001060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.283 6.283 3 C 0.142 3.858 4 C -0.209 4.209 5 C -0.090 4.090 6 C -0.149 4.149 7 C -0.068 4.068 8 C -0.115 4.115 9 C 0.133 3.867 10 N -0.689 5.689 11 C 0.705 3.295 12 O -0.569 6.569 13 N -0.614 5.614 14 C 0.114 3.886 15 C 0.186 3.814 16 H 0.031 0.969 17 C -0.146 4.146 18 N -0.576 5.576 19 C -0.263 4.263 20 H 0.053 0.947 21 C 0.037 3.963 22 N -0.876 5.876 23 Si 0.886 3.114 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.285 1.285 27 C 0.158 3.842 28 H 0.028 0.972 29 C -0.129 4.129 30 C 0.099 3.901 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.096 0.904 45 H 0.022 0.978 46 H 0.256 0.744 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 12.579 -11.246 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.194 6.194 3 C 0.093 3.907 4 C -0.228 4.228 5 C -0.109 4.109 6 C -0.167 4.167 7 C -0.071 4.071 8 C -0.171 4.171 9 C 0.038 3.962 10 N -0.341 5.341 11 C 0.407 3.593 12 O -0.445 6.445 13 N -0.349 5.349 14 C -0.010 4.010 15 C 0.079 3.921 16 H 0.049 0.951 17 C -0.204 4.204 18 N -0.301 5.301 19 C -0.393 4.393 20 H 0.071 0.929 21 C -0.165 4.165 22 N -0.516 5.516 23 Si 0.714 3.286 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.050 3.950 28 H 0.046 0.954 29 C -0.187 4.187 30 C -0.026 4.026 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.240 0.760 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.058 12.296 -10.468 19.025 hybrid contribution 0.447 -0.728 -0.072 0.857 sum -9.611 11.569 -10.540 18.366 Atomic orbital electron populations 1.22974 0.79517 1.03572 1.00443 1.86356 1.20166 1.25482 1.87419 1.18987 0.91067 0.85046 0.95568 1.21077 0.99839 0.92027 1.09882 1.20832 0.94493 0.96775 0.98795 1.20714 0.93534 0.97290 1.05196 1.19661 0.96400 0.90980 1.00009 1.20755 0.90550 1.03477 1.02356 1.16557 0.87099 0.85641 1.06922 1.42601 1.37646 1.16401 1.37448 1.15803 0.82864 0.79807 0.80829 1.90888 1.29426 1.78625 1.45577 1.47172 1.22568 1.18492 1.46677 1.22375 1.00005 0.85978 0.92675 1.20595 0.84137 0.96784 0.90593 0.95100 1.22058 0.99674 0.96678 1.02038 1.43954 1.20463 1.16285 1.49349 1.18696 1.25312 1.03720 0.91595 0.92906 1.25603 0.96033 0.97527 0.97334 1.70030 1.44906 1.34753 1.01927 0.86518 0.78461 0.85397 0.78190 1.19795 1.21471 1.21078 1.20901 0.90942 0.92138 0.90984 0.95392 1.21678 0.98389 0.99217 0.99374 1.22443 0.85890 0.99801 0.94515 0.93420 0.88685 0.92959 0.85524 0.85972 0.85776 0.90974 0.91106 0.91027 0.76033 0.90307 0.92518 0.93076 0.88579 0.95930 0.93384 0.93029 0.94570 0.91099 0.91784 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.28 -4.56 7.57 -43.26 -0.33 -4.89 16 3 C 0.14 2.15 6.10 -39.08 -0.24 1.91 16 4 C -0.21 -2.54 9.04 -39.46 -0.36 -2.90 16 5 C -0.09 -0.96 10.04 -39.56 -0.40 -1.35 16 6 C -0.15 -1.61 9.69 -39.58 -0.38 -1.99 16 7 C -0.07 -0.85 5.89 -104.46 -0.62 -1.46 16 8 C -0.11 -1.17 9.63 36.01 0.35 -0.83 16 9 C 0.13 2.01 6.00 -83.48 -0.50 1.51 16 10 N -0.69 -10.72 4.18 -14.10 -0.06 -10.78 16 11 C 0.70 13.53 7.74 -86.92 -0.67 12.86 16 12 O -0.57 -12.64 13.08 -18.28 -0.24 -12.88 16 13 N -0.61 -11.69 2.94 -177.94 -0.52 -12.21 16 14 C 0.11 2.34 5.90 -3.59 -0.02 2.32 16 15 C 0.19 4.30 3.20 -67.48 -0.22 4.09 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.15 -3.35 7.82 37.16 0.29 -3.06 16 18 N -0.58 -13.59 2.75 -156.76 -0.43 -14.02 16 19 C -0.26 -6.65 6.53 -15.06 -0.10 -6.75 16 20 H 0.05 1.35 7.27 -52.49 -0.38 0.97 16 21 C 0.04 0.96 3.43 -17.43 -0.06 0.90 16 22 N -0.88 -24.07 11.39 55.49 0.63 -23.44 16 23 Si 0.89 20.34 29.59 -169.99 -5.03 15.31 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.16 3.17 3.66 -67.26 -0.25 2.93 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 C -0.13 -2.31 8.20 37.16 0.30 -2.00 16 30 C 0.10 1.67 5.86 -3.37 -0.02 1.65 16 31 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 34 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.83 7.41 -51.93 -0.39 0.44 16 39 H 0.07 0.64 8.08 -51.92 -0.42 0.22 16 40 H 0.40 5.24 6.14 -40.82 -0.25 4.99 16 41 H 0.08 1.66 6.99 -51.93 -0.36 1.30 16 42 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 43 H 0.05 1.17 7.47 -51.93 -0.39 0.78 16 44 H 0.10 2.45 4.88 -51.93 -0.25 2.20 16 45 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 46 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 47 H 0.05 0.91 7.68 -51.93 -0.40 0.51 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 1.45 7.54 -51.93 -0.39 1.06 16 50 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 51 H 0.06 0.80 5.71 -51.93 -0.30 0.51 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -31.62 391.70 -9.98 -41.61 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.01 Total: 6.24 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.89 Total: 9.15 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.38 Total: -60.45 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.57 Total: -17.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.62 -9.98 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879383329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.190 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds