Wall clock time and date at job start Wed Apr 1 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35986 * 116.99460 * 2 1 4 4 C 1.38542 * 120.08501 * 0.02562 * 3 2 1 5 5 C 1.38253 * 120.01376 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.17362 * 359.67660 * 5 4 3 7 7 C 1.38206 * 120.16424 * 0.60002 * 6 5 4 8 8 C 1.50700 * 120.01081 * 179.69679 * 7 6 5 9 9 C 1.38713 * 119.98369 * 359.42451 * 7 6 5 10 10 N 1.40163 * 120.08816 * 180.25476 * 9 7 6 11 11 C 1.34773 * 120.00264 * 130.49527 * 10 9 7 12 12 O 1.21596 * 119.99926 * 6.06439 * 11 10 9 13 13 N 1.34777 * 120.00077 * 186.06573 * 11 10 9 14 14 C 1.46968 * 120.59022 * 185.35209 * 13 11 10 15 15 C 1.53372 * 108.63399 * 235.20246 * 14 13 11 16 16 H 1.08998 * 109.60889 * 70.32595 * 15 14 13 17 17 C 1.52998 * 109.60849 * 190.83492 * 15 14 13 18 18 N 1.46968 * 108.63492 * 310.57869 * 15 14 13 19 19 C 1.36937 * 120.59362 * 235.24480 * 18 15 14 20 20 H 1.07996 * 119.99934 * 126.37867 * 19 18 15 21 21 C 1.38816 * 120.00206 * 306.38380 * 19 18 15 22 22 N 1.31617 * 120.00026 * 342.11210 * 21 19 18 23 23 Si 1.86797 * 119.99936 * 162.10664 * 21 19 18 24 24 H 1.48498 * 109.47161 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47170 * 120.00259 * 23 21 19 26 26 H 1.48500 * 109.47349 * 240.00147 * 23 21 19 27 27 C 1.46961 * 118.81035 * 55.22747 * 18 15 14 28 28 H 1.09005 * 109.61238 * 64.51732 * 27 18 15 29 29 C 1.53003 * 109.60804 * 184.85522 * 27 18 15 30 30 C 1.46963 * 120.59755 * 5.07456 * 13 11 10 31 31 H 1.09001 * 109.47018 * 60.00766 * 1 2 3 32 32 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47188 * 300.00334 * 1 2 3 34 34 H 1.07997 * 119.99145 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.91039 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.91978 * 180.29555 * 6 5 4 37 37 H 1.08997 * 109.47542 * 269.73121 * 8 7 6 38 38 H 1.08998 * 109.46997 * 149.72393 * 8 7 6 39 39 H 1.09009 * 109.46907 * 29.72901 * 8 7 6 40 40 H 0.97003 * 119.99871 * 310.48757 * 10 9 7 41 41 H 1.08998 * 109.61596 * 354.95003 * 14 13 11 42 42 H 1.09002 * 109.60843 * 115.28841 * 14 13 11 43 43 H 1.09001 * 109.47399 * 68.69154 * 17 15 14 44 44 H 1.09006 * 109.46866 * 188.68433 * 17 15 14 45 45 H 1.08996 * 109.47093 * 308.68384 * 17 15 14 46 46 H 0.97000 * 120.00369 * 185.05035 * 22 21 19 47 47 H 1.09004 * 109.47196 * 63.65003 * 29 27 18 48 48 H 1.08996 * 109.47232 * 183.64592 * 29 27 18 49 49 H 1.08999 * 109.47297 * 303.64853 * 29 27 18 50 50 H 1.08993 * 109.61089 * 244.54042 * 30 13 11 51 51 H 1.09001 * 109.60718 * 5.05266 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3031 3.6808 0.0057 7 6 4.0613 2.5253 -0.0006 8 6 5.5659 2.6111 -0.0013 9 6 3.4372 1.2865 -0.0006 10 7 4.2040 0.1133 -0.0015 11 6 3.9390 -0.8658 0.8859 12 8 2.9681 -0.7808 1.6130 13 7 4.7501 -1.9391 0.9675 14 6 4.4110 -3.0678 1.8456 15 6 5.5861 -3.3170 2.7992 16 1 5.6516 -2.5018 3.5198 17 6 5.3779 -4.6420 3.5353 18 7 6.8252 -3.3798 2.0114 19 6 7.6488 -4.4706 2.0936 20 1 7.9438 -4.9934 1.1959 21 6 8.1045 -4.9046 3.3310 22 7 8.0522 -4.0995 4.3709 23 14 8.7918 -6.6312 3.5201 24 1 8.7412 -7.3303 2.2110 25 1 10.1998 -6.5552 3.9861 26 1 7.9814 -7.3805 4.5136 27 6 7.1641 -2.2510 1.1334 28 1 7.3421 -1.3599 1.7354 29 6 8.4213 -2.5863 0.3284 30 6 5.9863 -2.0044 0.1755 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2148 2.3195 0.0005 35 1 1.3339 4.5112 0.0000 36 1 3.7902 4.6447 0.0101 37 1 5.9282 2.6320 -1.0291 38 1 5.9795 1.7432 0.5122 39 1 5.8782 3.5203 0.5126 40 1 4.9255 0.0060 -0.6410 41 1 3.5172 -2.8278 2.4213 42 1 4.2301 -3.9582 1.2434 43 1 5.4745 -5.4681 2.8307 44 1 6.1281 -4.7438 4.3195 45 1 4.3829 -4.6581 3.9800 46 1 8.4370 -4.3752 5.2176 47 1 8.2187 -3.4346 -0.3254 48 1 8.7079 -1.7240 -0.2737 49 1 9.2330 -2.8390 1.0106 50 1 5.9180 -2.8215 -0.5426 51 1 6.1330 -1.0618 -0.3520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879383329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:37 Heat of formation + Delta-G solvation = -10.709273 kcal Electronic energy + Delta-G solvation = -32578.514323 eV Core-core repulsion = 28479.203154 eV Total energy + Delta-G solvation = -4099.311169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94265 -40.64463 -39.00476 -38.49418 -35.95543 -35.67390 -34.37082 -33.26373 -32.85236 -30.45166 -29.46734 -28.33809 -27.74798 -27.50323 -26.98509 -25.47088 -23.42331 -22.21727 -21.97815 -21.66399 -20.71657 -19.48420 -18.69971 -17.97267 -17.91215 -17.27334 -16.86882 -16.50111 -16.42715 -16.22563 -16.02455 -15.46008 -15.35801 -15.22998 -14.91986 -14.77453 -14.58644 -14.41309 -14.05189 -13.69184 -13.29142 -13.25766 -13.14845 -13.07043 -12.91586 -12.75457 -12.68050 -12.54926 -12.48839 -12.27030 -12.24739 -12.12863 -11.94647 -11.79129 -11.70998 -11.62431 -11.45996 -11.14058 -10.88063 -10.19394 -9.64675 -9.34858 -8.81426 -8.28123 -7.73673 -5.56660 0.30048 0.53491 1.44555 1.50729 1.58172 1.64439 2.19262 2.49229 2.50519 2.83281 2.90875 3.26071 3.52069 3.88751 4.02096 4.13026 4.17574 4.23403 4.28761 4.35733 4.37959 4.40977 4.44191 4.47626 4.51859 4.63935 4.68461 4.71743 4.75758 4.82392 4.85170 4.88593 4.92042 4.98848 5.00857 5.21006 5.22273 5.26442 5.41086 5.41945 5.48843 5.57812 5.61810 5.67657 5.70306 5.75734 5.89108 5.95776 6.04005 6.60399 6.60526 6.95212 7.23826 7.61718 7.79733 8.53732 9.17074 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.003045 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.776772 B = 9192.528738 C =10032.001060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.215 4.215 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.071 4.071 8 C -0.113 4.113 9 C 0.092 3.908 10 N -0.673 5.673 11 C 0.702 3.298 12 O -0.604 6.604 13 N -0.620 5.620 14 C 0.129 3.871 15 C 0.189 3.811 16 H -0.012 1.012 17 C -0.138 4.138 18 N -0.590 5.590 19 C -0.259 4.259 20 H 0.055 0.945 21 C -0.003 4.003 22 N -0.912 5.912 23 Si 0.941 3.059 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.150 3.850 28 H 0.003 0.997 29 C -0.117 4.117 30 C 0.109 3.891 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.412 0.588 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.075 0.925 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 14.293 -13.678 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.067 3.933 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.168 4.168 7 C -0.073 4.073 8 C -0.169 4.169 9 C -0.002 4.002 10 N -0.326 5.326 11 C 0.404 3.596 12 O -0.483 6.483 13 N -0.355 5.355 14 C 0.004 3.996 15 C 0.082 3.918 16 H 0.006 0.994 17 C -0.196 4.196 18 N -0.315 5.315 19 C -0.389 4.389 20 H 0.072 0.928 21 C -0.202 4.202 22 N -0.554 5.554 23 Si 0.768 3.232 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.215 1.215 27 C 0.044 3.956 28 H 0.021 0.979 29 C -0.175 4.175 30 C -0.015 4.015 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.058 0.942 50 H 0.093 0.907 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.410 14.040 -12.960 21.759 hybrid contribution 0.509 -1.102 0.667 1.385 sum -9.901 12.938 -12.293 20.410 Atomic orbital electron populations 1.23157 0.77807 1.04343 1.01654 1.86281 1.22223 1.26668 1.87865 1.19358 0.91567 0.85658 0.96734 1.21377 1.00818 0.91781 1.09485 1.21291 0.94881 0.97375 0.96607 1.21133 0.93811 0.97953 1.03896 1.19990 0.97671 0.90569 0.99101 1.20800 0.89102 1.03320 1.03723 1.16994 0.87516 0.86031 1.09692 1.42322 1.37744 1.15917 1.36581 1.15952 0.82429 0.80161 0.81031 1.90851 1.30914 1.79386 1.47128 1.47175 1.23354 1.18228 1.46746 1.22003 0.98108 0.87038 0.92441 1.20432 0.85472 0.95361 0.90513 0.99374 1.21915 0.99969 0.96507 1.01220 1.44192 1.20520 1.17045 1.49745 1.18860 1.24515 1.04051 0.91491 0.92809 1.26141 0.96769 1.00161 0.97140 1.70156 1.46540 1.36422 1.02246 0.85653 0.77359 0.81938 0.78207 1.18696 1.21865 1.21545 1.21086 0.93521 0.89982 0.91052 0.97939 1.21565 0.96019 1.01165 0.98764 1.22396 0.83401 1.02211 0.93481 0.91053 0.88270 0.92750 0.83731 0.82602 0.82757 0.88727 0.93017 0.89497 0.74827 0.91297 0.91624 0.93146 0.91111 0.94000 0.93924 0.92517 0.90525 0.94160 0.90661 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 113.37 1.11 1.67 16 2 O -0.32 -10.30 7.57 -70.87 -0.54 -10.84 16 3 C 0.11 3.42 6.10 22.59 0.14 3.55 16 4 C -0.22 -4.85 9.04 22.35 0.20 -4.64 16 5 C -0.08 -1.50 10.04 22.28 0.22 -1.27 16 6 C -0.15 -2.75 9.69 22.27 0.22 -2.54 16 7 C -0.07 -1.63 5.89 -19.76 -0.12 -1.74 16 8 C -0.11 -2.04 9.63 71.24 0.69 -1.35 16 9 C 0.09 2.70 6.00 38.17 0.23 2.93 16 10 N -0.67 -20.54 4.18 -316.79 -1.33 -21.87 16 11 C 0.70 27.13 7.74 179.06 1.39 28.52 16 12 O -0.60 -27.54 13.08 18.51 0.24 -27.29 16 13 N -0.62 -23.58 2.94 -835.14 -2.46 -26.03 16 14 C 0.13 5.39 5.90 86.41 0.51 5.90 16 15 C 0.19 9.06 3.20 45.03 0.14 9.21 16 16 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 17 C -0.14 -6.47 7.82 71.98 0.56 -5.91 16 18 N -0.59 -28.26 2.75 -649.88 -1.79 -30.05 16 19 C -0.26 -13.16 6.53 84.03 0.55 -12.61 16 20 H 0.05 2.72 7.27 -2.91 -0.02 2.70 16 21 C 0.00 -0.18 3.43 84.86 0.29 0.11 16 22 N -0.91 -51.81 11.39 21.65 0.25 -51.57 16 23 Si 0.94 42.29 29.59 68.60 2.03 44.32 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 C 0.15 6.01 3.66 45.18 0.17 6.17 16 28 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 29 C -0.12 -4.04 8.20 71.98 0.59 -3.45 16 30 C 0.11 3.54 5.86 86.56 0.51 4.04 16 31 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 32 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 34 H 0.15 2.57 6.30 -2.91 -0.02 2.55 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.14 7.41 -2.39 -0.02 1.12 16 39 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 40 H 0.41 10.11 6.14 -92.71 -0.57 9.54 16 41 H 0.07 3.00 6.99 -2.39 -0.02 2.99 16 42 H 0.07 2.62 8.12 -2.39 -0.02 2.60 16 43 H 0.05 2.32 7.47 -2.39 -0.02 2.30 16 44 H 0.07 3.74 4.88 -2.38 -0.01 3.72 16 45 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 46 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 47 H 0.06 1.89 7.68 -2.39 -0.02 1.87 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.04 1.62 7.54 -2.39 -0.02 1.61 16 50 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 51 H 0.10 2.37 5.71 -2.39 -0.01 2.35 16 Total: -1.00 -72.10 391.70 4.18 -67.92 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.37 Total: 26.81 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 7.40 Total: 28.60 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -5.32 Total: -129.52 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.29 Total: -38.14 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.10 4.18 -67.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879383329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.210 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds