Wall clock time and date at job start Wed Apr 1 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35977 * 117.00061 * 2 1 4 4 C 1.38548 * 120.08305 * 0.02562 * 3 2 1 5 5 C 1.38242 * 120.01780 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.17556 * 0.29475 * 5 4 3 7 7 C 1.38218 * 120.16114 * 359.45017 * 6 5 4 8 8 C 1.50692 * 120.00852 * 180.29715 * 7 6 5 9 9 C 1.38709 * 119.97921 * 0.52918 * 7 6 5 10 10 N 1.40169 * 120.08421 * 179.76918 * 9 7 6 11 11 C 1.34775 * 120.00330 * 215.76749 * 10 9 7 12 12 O 1.21595 * 119.99720 * 3.56922 * 11 10 9 13 13 N 1.34774 * 120.00304 * 183.57151 * 11 10 9 14 14 C 1.46965 * 120.59173 * 184.95543 * 13 11 10 15 15 C 1.53814 * 108.39468 * 124.75916 * 14 13 11 16 16 H 1.08997 * 109.67325 * 169.38762 * 15 14 13 17 17 C 1.53004 * 109.74082 * 289.84547 * 15 14 13 18 18 N 1.46957 * 108.57939 * 49.63840 * 15 14 13 19 19 C 1.36935 * 120.59657 * 124.67315 * 18 15 14 20 20 H 1.08006 * 120.00288 * 212.05611 * 19 18 15 21 21 C 1.38813 * 120.00338 * 32.04921 * 19 18 15 22 22 N 1.31626 * 119.99536 * 10.68246 * 21 19 18 23 23 Si 1.86798 * 120.00546 * 190.68351 * 21 19 18 24 24 H 1.48504 * 109.47068 * 89.99735 * 23 21 19 25 25 H 1.48491 * 109.47555 * 210.00340 * 23 21 19 26 26 H 1.48499 * 109.46817 * 330.00217 * 23 21 19 27 27 C 1.46962 * 118.81285 * 304.64289 * 18 15 14 28 28 H 1.08996 * 109.75362 * 295.40101 * 27 18 15 29 29 C 1.52999 * 109.61122 * 174.97345 * 27 18 15 30 30 C 1.46957 * 120.59487 * 5.23830 * 13 11 10 31 31 H 1.09006 * 109.47092 * 299.99750 * 1 2 3 32 32 H 1.09002 * 109.47220 * 59.99838 * 1 2 3 33 33 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 34 34 H 1.08008 * 119.99121 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.91762 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.92626 * 179.72596 * 6 5 4 37 37 H 1.09002 * 109.47402 * 270.23169 * 8 7 6 38 38 H 1.09003 * 109.47347 * 30.22869 * 8 7 6 39 39 H 1.08995 * 109.47402 * 150.23158 * 8 7 6 40 40 H 0.97005 * 120.00252 * 35.76916 * 10 9 7 41 41 H 1.09002 * 109.61129 * 244.53788 * 14 13 11 42 42 H 1.09000 * 109.61071 * 5.05549 * 14 13 11 43 43 H 1.08996 * 109.46827 * 179.15798 * 17 15 14 44 44 H 1.08994 * 109.47521 * 299.15750 * 17 15 14 45 45 H 1.08994 * 109.46876 * 59.16351 * 17 15 14 46 46 H 0.97000 * 119.99728 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47141 * 300.85159 * 29 27 18 48 48 H 1.09002 * 109.47638 * 60.85642 * 29 27 18 49 49 H 1.09008 * 109.47379 * 180.86089 * 29 27 18 50 50 H 1.09007 * 109.61237 * 354.94460 * 30 13 11 51 51 H 1.08997 * 109.61287 * 115.45636 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3032 3.6807 -0.0051 7 6 4.0614 2.5251 -0.0003 8 6 5.5659 2.6109 -0.0003 9 6 3.4372 1.2864 -0.0005 10 7 4.2040 0.1131 -0.0005 11 6 3.7800 -0.9691 -0.6828 12 8 2.7660 -0.9077 -1.3510 13 7 4.4800 -2.1194 -0.6246 14 6 4.0915 -3.2737 -1.4470 15 6 5.3079 -3.7047 -2.2840 16 1 5.1057 -4.6653 -2.7576 17 6 5.5950 -2.6533 -3.3578 18 7 6.4694 -3.8291 -1.3924 19 6 7.1807 -4.9978 -1.3332 20 1 7.6491 -5.2986 -0.4077 21 6 7.2995 -5.7959 -2.4627 22 7 6.9149 -5.3382 -3.6353 23 14 8.0052 -7.5195 -2.3185 24 1 6.9067 -8.4838 -2.0568 25 1 8.6904 -7.8814 -3.5852 26 1 8.9796 -7.5633 -1.1987 27 6 6.8545 -2.6766 -0.5658 28 1 7.1711 -1.8533 -1.2062 29 6 8.0018 -3.0730 0.3655 30 6 5.6415 -2.2438 0.2671 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 0.2148 2.3195 0.0005 35 1 1.3340 4.5113 0.0019 36 1 3.7904 4.6445 -0.0091 37 1 5.9287 2.6317 -1.0279 38 1 5.8780 3.5201 0.5136 39 1 5.9794 1.7430 0.5135 40 1 5.0399 0.0799 0.4905 41 1 3.7792 -4.0945 -0.8012 42 1 3.2717 -2.9926 -2.1080 43 1 6.4664 -2.9556 -3.9385 44 1 4.7322 -2.5628 -4.0177 45 1 5.7909 -1.6924 -2.8822 46 1 6.9983 -5.8958 -4.4247 47 1 7.6849 -3.9002 1.0007 48 1 8.8626 -3.3802 -0.2285 49 1 8.2754 -2.2211 0.9882 50 1 5.8457 -1.2823 0.7383 51 1 5.4370 -2.9928 1.0320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879383330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:42 Heat of formation + Delta-G solvation = 9.607487 kcal Electronic energy + Delta-G solvation = -32827.640352 eV Core-core repulsion = 28729.210184 eV Total energy + Delta-G solvation = -4098.430168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.80763 -39.34759 -37.61941 -37.26305 -34.58239 -33.92479 -32.62925 -32.06262 -31.20249 -29.30124 -27.88188 -27.43498 -26.61250 -26.22788 -25.26636 -23.67121 -22.48171 -21.27469 -20.82298 -20.04954 -18.73377 -18.21623 -17.58563 -16.80835 -16.14227 -16.04624 -15.49619 -15.08396 -15.03393 -14.72420 -14.30276 -14.11694 -13.97182 -13.77345 -13.65555 -13.52419 -13.33406 -13.03300 -12.80628 -12.36791 -12.22126 -11.95617 -11.90816 -11.71473 -11.57422 -11.45357 -11.20072 -11.02000 -10.94445 -10.85884 -10.78410 -10.61395 -10.58156 -10.12384 -10.10740 -9.97868 -9.69400 -9.64516 -9.33907 -8.48287 -8.36059 -8.13435 -7.57380 -6.56813 -5.79139 -3.29712 1.26570 1.50490 2.97277 3.35506 3.42679 3.43544 3.50714 3.58136 3.90527 4.17654 4.45142 4.75030 4.84790 5.06453 5.14232 5.19806 5.22305 5.25144 5.29740 5.36919 5.50609 5.56712 5.61240 5.63485 5.65901 5.67638 5.83665 5.96227 6.03087 6.16199 6.18825 6.26445 6.31041 6.31714 6.41980 6.48594 6.52268 6.65980 6.68475 6.82466 6.87264 6.92693 6.97451 7.06651 7.11108 7.34882 7.63565 7.67444 7.71653 7.84415 8.32733 8.45574 9.05374 9.20257 9.80049 10.38667 11.26894 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.003103 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.356936 B = 9022.617677 C = 9720.379336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.269 6.269 3 C 0.130 3.870 4 C -0.202 4.202 5 C -0.099 4.099 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.108 4.108 9 C 0.141 3.859 10 N -0.686 5.686 11 C 0.700 3.300 12 O -0.555 6.555 13 N -0.610 5.610 14 C 0.113 3.887 15 C 0.179 3.821 16 H 0.108 0.892 17 C -0.135 4.135 18 N -0.580 5.580 19 C -0.253 4.253 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.898 5.898 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.155 3.845 28 H 0.030 0.970 29 C -0.135 4.135 30 C 0.100 3.900 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.401 0.599 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.027 0.973 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.056 0.944 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 15.523 9.479 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.181 6.181 3 C 0.081 3.919 4 C -0.222 4.222 5 C -0.119 4.119 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.165 4.165 9 C 0.045 3.955 10 N -0.337 5.337 11 C 0.402 3.598 12 O -0.430 6.430 13 N -0.346 5.346 14 C -0.011 4.011 15 C 0.072 3.928 16 H 0.125 0.875 17 C -0.194 4.194 18 N -0.303 5.303 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.047 3.953 28 H 0.048 0.952 29 C -0.193 4.193 30 C -0.025 4.025 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.906 15.130 8.812 19.211 hybrid contribution 0.505 -0.737 0.205 0.917 sum -7.401 14.392 9.017 18.526 Atomic orbital electron populations 1.22958 0.80269 1.03416 1.00134 1.86624 1.19678 1.24710 1.87049 1.18848 0.90763 0.85478 0.96811 1.21058 0.99798 0.91975 1.09342 1.20790 0.94460 0.96757 0.99845 1.20665 0.93521 0.97137 1.04836 1.19467 0.96203 0.90802 1.02027 1.20677 0.90658 1.02381 1.02783 1.16633 0.87456 0.85689 1.05746 1.42826 1.25867 1.10756 1.54248 1.15784 0.83264 0.80113 0.80643 1.90902 1.24678 1.83086 1.44382 1.47133 1.30559 1.11854 1.45042 1.22471 0.99724 0.85230 0.93691 1.20873 0.83899 0.99361 0.88695 0.87480 1.21939 1.01167 0.97462 0.98855 1.44082 1.30138 1.09124 1.46921 1.19148 1.28229 0.96570 0.94281 0.91317 1.25176 0.99707 0.99290 0.95066 1.69951 1.50874 1.35562 0.97810 0.86296 0.78757 0.84791 0.76875 1.21513 1.21829 1.20549 1.20770 0.91018 0.91633 0.91888 0.95229 1.21770 0.98984 0.99784 0.98794 1.22299 0.87749 0.99485 0.92975 0.93726 0.93145 0.88820 0.85571 0.86087 0.85858 0.90730 0.91119 0.92031 0.75974 0.92644 0.90173 0.90766 0.95406 0.96147 0.93620 0.92529 0.91579 0.94238 0.92541 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.27 -4.46 6.50 -44.91 -0.29 -4.75 16 3 C 0.13 2.00 6.15 -39.08 -0.24 1.76 16 4 C -0.20 -2.50 9.04 -39.47 -0.36 -2.86 16 5 C -0.10 -1.07 10.04 -39.57 -0.40 -1.46 16 6 C -0.14 -1.54 9.69 -39.58 -0.38 -1.92 16 7 C -0.08 -1.01 5.89 -104.46 -0.62 -1.62 16 8 C -0.11 -1.05 9.76 36.00 0.35 -0.70 16 9 C 0.14 2.13 6.23 -83.48 -0.52 1.61 16 10 N -0.69 -10.68 4.92 -14.11 -0.07 -10.74 16 11 C 0.70 13.23 7.65 -86.92 -0.66 12.56 16 12 O -0.55 -11.97 12.21 -19.96 -0.24 -12.21 16 13 N -0.61 -11.43 2.58 -177.94 -0.46 -11.89 16 14 C 0.11 2.32 5.99 -3.37 -0.02 2.29 16 15 C 0.18 4.11 2.34 -67.26 -0.16 3.95 16 16 H 0.11 2.78 6.06 -51.93 -0.31 2.47 16 17 C -0.14 -3.11 8.94 37.16 0.33 -2.77 16 18 N -0.58 -13.42 2.68 -156.77 -0.42 -13.84 16 19 C -0.25 -6.38 8.53 -15.06 -0.13 -6.50 16 20 H 0.07 1.70 6.28 -52.48 -0.33 1.37 16 21 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 22 N -0.90 -24.48 9.91 55.49 0.55 -23.93 16 23 Si 0.90 20.86 29.57 -169.99 -5.03 15.83 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.15 2.98 3.22 -67.49 -0.22 2.76 16 28 H 0.03 0.62 7.41 -51.93 -0.38 0.23 16 29 C -0.14 -2.30 7.97 37.16 0.30 -2.01 16 30 C 0.10 1.67 5.90 -3.60 -0.02 1.65 16 31 H 0.04 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.13 1.30 6.30 -52.48 -0.33 0.97 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.06 0.57 6.53 -51.93 -0.34 0.23 16 40 H 0.40 5.29 4.72 -40.82 -0.19 5.09 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.69 7.00 -51.93 -0.36 1.33 16 43 H 0.07 1.89 7.11 -51.93 -0.37 1.52 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.45 7.02 -51.93 -0.36 0.08 16 46 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 48 H 0.07 1.24 7.74 -51.93 -0.40 0.84 16 49 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 50 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 51 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -30.87 387.59 -9.75 -40.62 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.79 Total: 6.95 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.84 Total: 8.14 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.40 Total: -60.41 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.54 Total: -16.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.87 -9.75 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879383330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.226 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds