Wall clock time and date at job start Wed Apr 1 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35977 * 117.00061 * 2 1 4 4 C 1.38548 * 120.08305 * 0.02562 * 3 2 1 5 5 C 1.38242 * 120.01780 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.17556 * 0.29475 * 5 4 3 7 7 C 1.38218 * 120.16114 * 359.45017 * 6 5 4 8 8 C 1.50692 * 120.00852 * 180.29715 * 7 6 5 9 9 C 1.38709 * 119.97921 * 0.52918 * 7 6 5 10 10 N 1.40169 * 120.08421 * 179.76918 * 9 7 6 11 11 C 1.34775 * 120.00330 * 215.76749 * 10 9 7 12 12 O 1.21595 * 119.99720 * 3.56922 * 11 10 9 13 13 N 1.34774 * 120.00304 * 183.57151 * 11 10 9 14 14 C 1.46965 * 120.59173 * 184.95543 * 13 11 10 15 15 C 1.53814 * 108.39468 * 124.75916 * 14 13 11 16 16 H 1.08997 * 109.67325 * 169.38762 * 15 14 13 17 17 C 1.53004 * 109.74082 * 289.84547 * 15 14 13 18 18 N 1.46957 * 108.57939 * 49.63840 * 15 14 13 19 19 C 1.36935 * 120.59657 * 124.67315 * 18 15 14 20 20 H 1.08006 * 120.00288 * 212.05611 * 19 18 15 21 21 C 1.38813 * 120.00338 * 32.04921 * 19 18 15 22 22 N 1.31626 * 119.99536 * 10.68246 * 21 19 18 23 23 Si 1.86798 * 120.00546 * 190.68351 * 21 19 18 24 24 H 1.48504 * 109.47068 * 89.99735 * 23 21 19 25 25 H 1.48491 * 109.47555 * 210.00340 * 23 21 19 26 26 H 1.48499 * 109.46817 * 330.00217 * 23 21 19 27 27 C 1.46962 * 118.81285 * 304.64289 * 18 15 14 28 28 H 1.08996 * 109.75362 * 295.40101 * 27 18 15 29 29 C 1.52999 * 109.61122 * 174.97345 * 27 18 15 30 30 C 1.46957 * 120.59487 * 5.23830 * 13 11 10 31 31 H 1.09006 * 109.47092 * 299.99750 * 1 2 3 32 32 H 1.09002 * 109.47220 * 59.99838 * 1 2 3 33 33 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 34 34 H 1.08008 * 119.99121 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.91762 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.92626 * 179.72596 * 6 5 4 37 37 H 1.09002 * 109.47402 * 270.23169 * 8 7 6 38 38 H 1.09003 * 109.47347 * 30.22869 * 8 7 6 39 39 H 1.08995 * 109.47402 * 150.23158 * 8 7 6 40 40 H 0.97005 * 120.00252 * 35.76916 * 10 9 7 41 41 H 1.09002 * 109.61129 * 244.53788 * 14 13 11 42 42 H 1.09000 * 109.61071 * 5.05549 * 14 13 11 43 43 H 1.08996 * 109.46827 * 179.15798 * 17 15 14 44 44 H 1.08994 * 109.47521 * 299.15750 * 17 15 14 45 45 H 1.08994 * 109.46876 * 59.16351 * 17 15 14 46 46 H 0.97000 * 119.99728 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47141 * 300.85159 * 29 27 18 48 48 H 1.09002 * 109.47638 * 60.85642 * 29 27 18 49 49 H 1.09008 * 109.47379 * 180.86089 * 29 27 18 50 50 H 1.09007 * 109.61237 * 354.94460 * 30 13 11 51 51 H 1.08997 * 109.61287 * 115.45636 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3032 3.6807 -0.0051 7 6 4.0614 2.5251 -0.0003 8 6 5.5659 2.6109 -0.0003 9 6 3.4372 1.2864 -0.0005 10 7 4.2040 0.1131 -0.0005 11 6 3.7800 -0.9691 -0.6828 12 8 2.7660 -0.9077 -1.3510 13 7 4.4800 -2.1194 -0.6246 14 6 4.0915 -3.2737 -1.4470 15 6 5.3079 -3.7047 -2.2840 16 1 5.1057 -4.6653 -2.7576 17 6 5.5950 -2.6533 -3.3578 18 7 6.4694 -3.8291 -1.3924 19 6 7.1807 -4.9978 -1.3332 20 1 7.6491 -5.2986 -0.4077 21 6 7.2995 -5.7959 -2.4627 22 7 6.9149 -5.3382 -3.6353 23 14 8.0052 -7.5195 -2.3185 24 1 6.9067 -8.4838 -2.0568 25 1 8.6904 -7.8814 -3.5852 26 1 8.9796 -7.5633 -1.1987 27 6 6.8545 -2.6766 -0.5658 28 1 7.1711 -1.8533 -1.2062 29 6 8.0018 -3.0730 0.3655 30 6 5.6415 -2.2438 0.2671 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 0.2148 2.3195 0.0005 35 1 1.3340 4.5113 0.0019 36 1 3.7904 4.6445 -0.0091 37 1 5.9287 2.6317 -1.0279 38 1 5.8780 3.5201 0.5136 39 1 5.9794 1.7430 0.5135 40 1 5.0399 0.0799 0.4905 41 1 3.7792 -4.0945 -0.8012 42 1 3.2717 -2.9926 -2.1080 43 1 6.4664 -2.9556 -3.9385 44 1 4.7322 -2.5628 -4.0177 45 1 5.7909 -1.6924 -2.8822 46 1 6.9983 -5.8958 -4.4247 47 1 7.6849 -3.9002 1.0007 48 1 8.8626 -3.3802 -0.2285 49 1 8.2754 -2.2211 0.9882 50 1 5.8457 -1.2823 0.7383 51 1 5.4370 -2.9928 1.0320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879383330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:41 Heat of formation + Delta-G solvation = -6.426303 kcal Electronic energy + Delta-G solvation = -32828.335629 eV Core-core repulsion = 28729.210184 eV Total energy + Delta-G solvation = -4099.125445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98695 -40.63193 -38.94308 -38.48640 -35.83577 -35.55644 -34.22430 -33.21189 -32.79532 -30.38831 -29.67470 -28.31705 -27.84791 -27.46062 -26.80938 -25.45298 -23.62516 -22.50805 -22.11757 -21.45127 -20.35940 -19.55613 -18.69129 -17.92619 -17.78378 -17.27184 -16.90447 -16.53425 -16.33282 -16.09172 -15.77894 -15.45612 -15.27097 -15.04553 -14.88512 -14.66426 -14.61367 -14.45882 -14.23380 -13.61579 -13.48116 -13.17306 -13.09491 -13.03180 -12.85565 -12.79528 -12.71980 -12.49211 -12.40462 -12.29872 -12.26493 -11.98247 -11.88580 -11.79868 -11.73323 -11.50087 -11.37793 -11.23991 -10.85263 -10.44644 -9.68440 -9.27877 -8.68731 -8.41894 -7.75680 -5.27921 0.33936 0.57202 1.50504 1.52670 1.59296 1.65292 2.26749 2.55571 2.57450 2.88394 2.89049 3.39143 3.54724 3.88823 4.04482 4.15904 4.17797 4.22409 4.27623 4.37324 4.39571 4.40934 4.43809 4.46551 4.63006 4.65968 4.69910 4.71911 4.72622 4.81209 4.83420 4.89575 4.91621 4.97495 5.11544 5.18813 5.21950 5.25818 5.38353 5.42469 5.44804 5.58736 5.60887 5.67859 5.75369 5.78659 5.83550 5.96577 6.06947 6.50821 6.65874 6.98077 7.24552 7.65640 7.92309 8.46828 9.27788 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.003103 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.356936 B = 9022.617677 C = 9720.379336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.101 3.899 4 C -0.210 4.210 5 C -0.093 4.093 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.102 3.898 10 N -0.673 5.673 11 C 0.697 3.303 12 O -0.586 6.586 13 N -0.614 5.614 14 C 0.128 3.872 15 C 0.183 3.817 16 H 0.074 0.926 17 C -0.116 4.116 18 N -0.594 5.594 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.046 4.046 22 N -0.926 5.926 23 Si 0.960 3.040 24 H -0.291 1.291 25 H -0.302 1.302 26 H -0.269 1.269 27 C 0.149 3.851 28 H 0.018 0.982 29 C -0.127 4.127 30 C 0.108 3.892 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.411 0.589 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.028 0.972 45 H 0.022 0.978 46 H 0.245 0.755 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 18.164 11.808 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.053 3.947 4 C -0.229 4.229 5 C -0.112 4.112 6 C -0.161 4.161 7 C -0.085 4.085 8 C -0.166 4.166 9 C 0.006 3.994 10 N -0.325 5.325 11 C 0.399 3.601 12 O -0.464 6.464 13 N -0.350 5.350 14 C 0.003 3.997 15 C 0.075 3.925 16 H 0.092 0.908 17 C -0.175 4.175 18 N -0.317 5.317 19 C -0.379 4.379 20 H 0.094 0.906 21 C -0.242 4.242 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.218 1.218 25 H -0.229 1.229 26 H -0.193 1.193 27 C 0.043 3.957 28 H 0.036 0.964 29 C -0.184 4.184 30 C -0.017 4.017 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.112 0.888 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.644 17.821 11.200 22.394 hybrid contribution 0.375 -1.387 -0.485 1.517 sum -7.269 16.434 10.715 20.922 Atomic orbital electron populations 1.23101 0.78735 1.03934 1.01341 1.86535 1.21538 1.26027 1.87563 1.19244 0.91379 0.85967 0.98131 1.21340 1.00675 0.91816 1.09073 1.21243 0.94958 0.97256 0.97696 1.21109 0.93708 0.97934 1.03385 1.19832 0.97648 0.90232 1.00766 1.20755 0.88975 1.03936 1.02889 1.17065 0.87743 0.86170 1.08387 1.42556 1.26121 1.10179 1.53605 1.15903 0.82886 0.80599 0.80678 1.90875 1.26066 1.83650 1.45786 1.47079 1.31284 1.11455 1.45176 1.22066 0.98026 0.86092 0.93511 1.20652 0.85157 0.97612 0.89060 0.90835 1.21713 0.99807 0.97402 0.98540 1.44279 1.30104 1.10024 1.47312 1.19445 1.27027 0.97226 0.94224 0.90630 1.25821 1.00959 1.02330 0.95046 1.70118 1.52644 1.36283 0.98119 0.85382 0.78000 0.81219 0.76443 1.21844 1.22933 1.19344 1.20979 0.93065 0.89815 0.91876 0.96444 1.21689 0.96971 1.01467 0.98321 1.22294 0.85610 1.01636 0.92113 0.91481 0.92827 0.88768 0.84017 0.82836 0.82716 0.91197 0.88471 0.91710 0.74856 0.92667 0.91166 0.93638 0.95274 0.95941 0.94547 0.92708 0.93769 0.89995 0.88770 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.30 -10.13 6.50 -69.16 -0.45 -10.58 16 3 C 0.10 3.03 6.15 22.59 0.14 3.17 16 4 C -0.21 -4.79 9.04 22.34 0.20 -4.59 16 5 C -0.09 -1.67 10.04 22.28 0.22 -1.45 16 6 C -0.14 -2.56 9.69 22.27 0.22 -2.34 16 7 C -0.08 -1.81 5.89 -19.76 -0.12 -1.92 16 8 C -0.11 -1.79 9.76 71.23 0.70 -1.10 16 9 C 0.10 2.94 6.23 38.17 0.24 3.18 16 10 N -0.67 -20.18 4.92 -316.80 -1.56 -21.73 16 11 C 0.70 26.20 7.65 179.06 1.37 27.57 16 12 O -0.59 -25.73 12.21 20.12 0.25 -25.48 16 13 N -0.61 -22.77 2.58 -835.15 -2.16 -24.93 16 14 C 0.13 5.37 5.99 86.57 0.52 5.89 16 15 C 0.18 8.66 2.34 45.18 0.11 8.77 16 16 H 0.07 4.01 6.06 -2.39 -0.01 4.00 16 17 C -0.12 -5.50 8.94 71.98 0.64 -4.85 16 18 N -0.59 -27.73 2.68 -649.89 -1.74 -29.47 16 19 C -0.25 -12.64 8.53 84.03 0.72 -11.92 16 20 H 0.08 3.68 6.28 -2.91 -0.02 3.66 16 21 C -0.05 -2.44 5.05 84.86 0.43 -2.01 16 22 N -0.93 -52.39 9.91 21.65 0.21 -52.18 16 23 Si 0.96 43.65 29.57 68.60 2.03 45.68 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 C 0.15 5.58 3.22 45.03 0.15 5.73 16 28 H 0.02 0.72 7.41 -2.39 -0.02 0.70 16 29 C -0.13 -4.03 7.97 71.98 0.57 -3.46 16 30 C 0.11 3.39 5.90 86.42 0.51 3.90 16 31 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 32 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.14 2.63 6.30 -2.91 -0.02 2.61 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 39 H 0.06 1.01 6.53 -2.39 -0.02 0.99 16 40 H 0.41 9.96 4.72 -92.70 -0.44 9.52 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 3.07 7.00 -2.39 -0.02 3.06 16 43 H 0.04 2.40 7.11 -2.39 -0.02 2.39 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.02 1.01 7.02 -2.39 -0.02 0.99 16 46 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.05 1.76 7.31 -2.39 -0.02 1.74 16 48 H 0.04 1.59 7.74 -2.39 -0.02 1.57 16 49 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.09 2.24 5.57 -2.38 -0.01 2.23 16 51 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 Total: -1.00 -69.86 387.59 4.81 -65.05 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.51 Total: 27.40 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.72 Total: 26.24 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.24 Total: -128.31 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.20 Total: -36.06 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.86 4.81 -65.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879383330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.623 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds