Wall clock time and date at job start Wed Apr 1 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.46353 * 2 1 4 4 C 1.38352 * 119.30919 * 180.02562 * 3 2 1 5 5 C 1.40025 * 118.28546 * 0.02562 * 4 3 2 6 6 C 1.47837 * 120.55945 * 179.97438 * 5 4 3 7 7 O 1.21558 * 120.00187 * 174.26835 * 6 5 4 8 8 N 1.34776 * 120.00194 * 354.27447 * 6 5 4 9 9 C 1.46500 * 120.00283 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47052 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64322 * 303.31104 * 10 9 8 12 12 C 1.54326 * 110.71987 * 66.45360 * 10 9 8 13 13 N 1.47017 * 107.27141 * 140.73106 * 12 10 9 14 14 C 1.36938 * 125.64979 * 181.01876 * 13 12 10 15 15 H 1.08002 * 119.99579 * 10.09936 * 14 13 12 16 16 C 1.38811 * 120.00172 * 190.09499 * 14 13 12 17 17 N 1.31621 * 119.99947 * 30.32086 * 16 14 13 18 18 Si 1.86801 * 120.00105 * 210.31611 * 16 14 13 19 19 H 1.48506 * 109.47106 * 60.00337 * 18 16 14 20 20 H 1.48502 * 109.47354 * 300.00509 * 18 16 14 21 21 H 1.48502 * 109.47387 * 180.02562 * 18 16 14 22 22 C 1.47423 * 108.70518 * 1.28653 * 13 12 10 23 23 C 1.55131 * 104.72392 * 335.55393 * 22 13 12 24 24 H 1.08996 * 110.91198 * 155.27085 * 23 22 13 25 25 O 1.42898 * 111.22496 * 279.17960 * 23 22 13 26 26 C 1.39520 * 118.88150 * 0.24901 * 5 4 3 27 27 C 1.50706 * 119.71541 * 179.74928 * 26 5 4 28 28 C 1.52997 * 109.47009 * 86.93675 * 27 26 5 29 29 C 1.53000 * 109.46860 * 206.93360 * 27 26 5 30 30 N 1.31698 * 120.56640 * 359.45915 * 26 5 4 31 31 H 1.08999 * 109.46878 * 89.99724 * 1 2 3 32 32 H 1.09005 * 109.46737 * 209.99962 * 1 2 3 33 33 H 1.08997 * 109.46715 * 329.99505 * 1 2 3 34 34 H 1.08007 * 120.34496 * 0.02562 * 3 2 1 35 35 H 1.07995 * 120.85869 * 180.02562 * 4 3 2 36 36 H 0.96999 * 119.99910 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46998 * 59.99448 * 9 8 6 38 38 H 1.08998 * 109.46988 * 299.99372 * 9 8 6 39 39 H 1.09000 * 109.88065 * 21.31335 * 12 10 9 40 40 H 1.08998 * 110.00741 * 260.22013 * 12 10 9 41 41 H 0.96996 * 120.00050 * 5.80305 * 17 16 14 42 42 H 1.09007 * 110.36868 * 94.48034 * 22 13 12 43 43 H 1.09001 * 110.37205 * 216.80556 * 22 13 12 44 44 H 0.96708 * 113.99833 * 292.20325 * 25 23 22 45 45 H 1.08993 * 109.47145 * 326.93339 * 27 26 5 46 46 H 1.08993 * 109.47441 * 59.99845 * 28 27 26 47 47 H 1.09001 * 109.46848 * 179.97438 * 28 27 26 48 48 H 1.08997 * 109.46900 * 299.99750 * 28 27 26 49 49 H 1.09004 * 109.47132 * 60.00242 * 29 27 26 50 50 H 1.09001 * 109.47040 * 179.97438 * 29 27 26 51 51 H 1.08998 * 109.47681 * 299.99849 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.2313 -0.0340 -0.0016 6 6 5.7083 -0.0966 -0.0028 7 8 6.2713 -1.1689 0.1014 8 7 6.4307 1.0352 -0.1193 9 6 7.8944 0.9731 -0.1210 10 6 8.4646 2.3855 -0.2653 11 1 8.0834 2.8635 -1.1676 12 6 8.1402 3.2352 0.9815 13 7 9.3257 4.0547 1.2718 14 6 9.4525 4.9340 2.3139 15 1 8.7098 4.9528 3.0978 16 6 10.5355 5.8008 2.3628 17 7 11.0863 6.2295 1.2469 18 14 11.2113 6.3591 4.0124 19 1 11.6633 5.1762 4.7882 20 1 10.1485 7.0698 4.7679 21 1 12.3589 7.2756 3.7927 22 6 10.3531 3.7780 0.2514 23 6 10.0160 2.3573 -0.2725 24 1 10.3994 2.2139 -1.2827 25 8 10.5139 1.3491 0.6093 26 6 3.4716 -1.2043 -0.0074 27 6 4.1628 -2.5435 -0.0144 28 6 4.4655 -2.9686 1.4238 29 6 3.2537 -3.5831 -0.6729 30 7 2.1559 -1.1487 -0.0011 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3632 0.8899 0.5139 34 1 1.6444 2.1381 0.0004 35 1 4.1275 2.1264 -0.0001 36 1 5.9815 1.8908 -0.2027 37 1 8.2310 0.3586 -0.9561 38 1 8.2406 0.5350 0.8151 39 1 7.9235 2.5837 1.8280 40 1 7.2841 3.8796 0.7812 41 1 10.6852 6.0083 0.3919 42 1 10.2916 4.5072 -0.5565 43 1 11.3465 3.7906 0.7000 44 1 11.4790 1.2937 0.6384 45 1 5.0946 -2.4685 -0.5749 46 1 3.5338 -3.0436 1.9843 47 1 4.9650 -3.9375 1.4187 48 1 5.1131 -2.2280 1.8929 49 1 3.0380 -3.2802 -1.6976 50 1 3.7537 -4.5516 -0.6784 51 1 2.3219 -3.6581 -0.1124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958283728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:59 Heat of formation + Delta-G solvation = -31.725830 kcal Electronic energy + Delta-G solvation = -31008.998636 eV Core-core repulsion = 26908.776120 eV Total energy + Delta-G solvation = -4100.222515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.14120 -39.37147 -38.41489 -35.99354 -34.99422 -34.68602 -33.44675 -32.20685 -31.63098 -29.76768 -28.41626 -27.89481 -27.06886 -25.47826 -24.31288 -23.58299 -22.92660 -20.97439 -20.58727 -20.22162 -19.84083 -17.94136 -17.72562 -17.01115 -16.69238 -16.02106 -15.56524 -15.42714 -14.85183 -14.77758 -14.53476 -14.39473 -14.31862 -14.11620 -13.74115 -13.57172 -13.33691 -13.19533 -13.05640 -12.84918 -12.55988 -12.50592 -12.42694 -12.27205 -12.07887 -11.61435 -11.41957 -11.16414 -11.07882 -11.03742 -10.80427 -10.72095 -10.54122 -10.36266 -10.12058 -10.03629 -9.96367 -9.73464 -9.45329 -9.35800 -9.20321 -8.88807 -8.43761 -7.01389 -6.17554 -3.13506 0.42179 0.93931 2.74340 3.06948 3.47747 3.53216 3.56768 3.70182 3.86416 4.31002 4.36039 4.44314 4.52633 4.57721 4.72526 4.91918 5.02737 5.04274 5.10549 5.11392 5.16849 5.19815 5.22891 5.23748 5.26092 5.49209 5.56587 5.60424 5.65396 5.65881 5.71745 5.73803 5.82820 5.84198 5.87178 5.96409 6.03741 6.15738 6.19206 6.21918 6.30831 6.39719 6.46940 6.52572 6.66217 6.78607 6.84960 7.41537 7.69292 7.70334 8.04257 8.14512 8.42204 8.95204 9.76344 10.29718 11.16895 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002404 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.810367 B =11642.341762 C =12563.688073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.151 3.849 3 C -0.187 4.187 4 C -0.036 4.036 5 C -0.194 4.194 6 C 0.560 3.440 7 O -0.525 6.525 8 N -0.721 5.721 9 C 0.142 3.858 10 C -0.107 4.107 11 H 0.087 0.913 12 C 0.147 3.853 13 N -0.597 5.597 14 C -0.335 4.335 15 H 0.067 0.933 16 C -0.025 4.025 17 N -0.918 5.918 18 Si 1.059 2.941 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.285 1.285 22 C 0.118 3.882 23 C 0.093 3.907 24 H 0.061 0.939 25 O -0.553 6.553 26 C 0.202 3.798 27 C -0.058 4.058 28 C -0.127 4.127 29 C -0.136 4.136 30 N -0.485 5.485 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.031 0.969 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.376 0.624 45 H 0.119 0.881 46 H 0.047 0.953 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.054 0.946 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 -13.696 -6.744 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.013 3.987 3 C -0.207 4.207 4 C -0.062 4.062 5 C -0.200 4.200 6 C 0.347 3.653 7 O -0.404 6.404 8 N -0.372 5.372 9 C 0.019 3.981 10 C -0.127 4.127 11 H 0.105 0.895 12 C 0.021 3.979 13 N -0.324 5.324 14 C -0.463 4.463 15 H 0.085 0.915 16 C -0.226 4.226 17 N -0.559 5.559 18 Si 0.889 3.111 19 H -0.221 1.221 20 H -0.220 1.220 21 H -0.211 1.211 22 C -0.008 4.008 23 C 0.032 3.968 24 H 0.078 0.922 25 O -0.359 6.359 26 C 0.063 3.937 27 C -0.077 4.077 28 C -0.185 4.185 29 C -0.194 4.194 30 N -0.194 5.194 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.223 0.777 45 H 0.137 0.863 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.594 -14.358 -5.731 22.679 hybrid contribution -0.468 0.883 -0.869 1.324 sum -17.062 -13.475 -6.600 22.721 Atomic orbital electron populations 1.20778 0.88513 1.03768 1.03324 1.21544 0.97253 0.88296 0.91565 1.21891 0.94481 0.99591 1.04754 1.21793 0.94800 0.97323 0.92325 1.20797 0.94644 0.94868 1.09651 1.17958 0.86146 0.84275 0.76925 1.90710 1.72211 1.27929 1.49503 1.46014 1.08076 1.09019 1.74111 1.21231 0.77141 0.96456 1.03306 1.22519 0.94922 0.95129 1.00107 0.89468 1.21298 0.90785 0.92349 0.93499 1.44398 1.10128 1.47115 1.30763 1.19734 1.12192 1.15257 0.99070 0.91491 1.25659 0.97090 0.95570 1.04253 1.70821 1.45227 1.41370 0.98511 0.83606 0.76523 0.75925 0.75064 1.22108 1.22049 1.21097 1.22269 0.94711 0.91533 0.92321 1.22999 0.92675 0.89390 0.91706 0.92162 1.86437 1.25999 1.56088 1.67329 1.21477 0.88478 0.94890 0.88813 1.20543 0.99242 0.88694 0.99221 1.21619 1.00891 1.01620 0.94365 1.21731 0.99798 0.97660 1.00195 1.67445 1.08991 1.28756 1.14211 0.90051 0.90212 0.90421 0.84184 0.84294 0.76742 0.91495 0.89818 0.95107 0.96346 0.92165 0.95160 0.92237 0.77713 0.86347 0.93371 0.92023 0.92103 0.93308 0.92735 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 36.01 0.37 -0.30 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.19 -1.65 9.72 -39.50 -0.38 -2.03 16 4 C -0.04 -0.36 9.64 -38.87 -0.37 -0.74 16 5 C -0.19 -2.40 5.89 -104.82 -0.62 -3.01 16 6 C 0.56 7.79 7.71 -12.33 -0.10 7.70 16 7 O -0.53 -8.47 12.06 5.31 0.06 -8.41 16 8 N -0.72 -9.33 5.35 -61.25 -0.33 -9.66 16 9 C 0.14 2.09 4.60 -4.04 -0.02 2.08 16 10 C -0.11 -1.71 2.93 -88.78 -0.26 -1.97 16 11 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.15 2.94 6.52 -3.07 -0.02 2.92 16 13 N -0.60 -14.81 3.35 -169.93 -0.57 -15.38 16 14 C -0.34 -9.41 10.03 -15.06 -0.15 -9.56 16 15 H 0.07 1.89 7.99 -52.49 -0.42 1.47 16 16 C -0.02 -0.70 5.04 -17.43 -0.09 -0.79 16 17 N -0.92 -27.17 12.75 55.49 0.71 -26.46 16 18 Si 1.06 25.26 30.01 -169.99 -5.10 20.16 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.12 2.60 4.97 -2.41 -0.01 2.59 16 23 C 0.09 1.58 4.17 -24.46 -0.10 1.48 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 O -0.55 -9.42 12.25 -35.23 -0.43 -9.86 16 26 C 0.20 2.54 5.81 -82.17 -0.48 2.07 16 27 C -0.06 -0.71 2.37 -91.77 -0.22 -0.93 16 28 C -0.13 -1.52 8.80 37.16 0.33 -1.19 16 29 C -0.14 -1.41 8.71 37.16 0.32 -1.09 16 30 N -0.48 -5.70 9.07 -5.42 -0.05 -5.75 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.14 1.09 6.56 -52.49 -0.34 0.75 16 36 H 0.40 4.36 6.47 -40.82 -0.26 4.10 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.46 7.45 -51.93 -0.39 1.08 16 39 H 0.03 0.66 7.77 -51.93 -0.40 0.25 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.27 7.84 6.00 -40.82 -0.24 7.59 16 42 H 0.03 0.70 6.96 -51.93 -0.36 0.34 16 43 H 0.06 1.45 7.60 -51.93 -0.39 1.06 16 44 H 0.38 5.02 9.12 45.56 0.42 5.44 16 45 H 0.12 1.62 5.58 -51.93 -0.29 1.33 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.83 7.16 -51.93 -0.37 0.46 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.66 7.76 -51.93 -0.40 0.26 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -34.21 403.98 -9.31 -43.52 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.33 Total: 7.62 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.36 Total: -1.88 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.24 Total: -57.25 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.37 Total: -18.27 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.10 Total: 20.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.21 -9.31 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.796 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds