Wall clock time and date at job start Wed Apr 1 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38350 * 119.45774 * 2 1 4 4 C 1.38362 * 119.29813 * 179.74266 * 3 2 1 5 5 C 1.40023 * 118.28926 * 0.53604 * 4 3 2 6 6 C 1.47842 * 120.56033 * 179.73743 * 5 4 3 7 7 O 1.21553 * 120.00076 * 173.98535 * 6 5 4 8 8 N 1.34771 * 119.99827 * 353.98090 * 6 5 4 9 9 C 1.46505 * 119.99957 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.78025 * 51.76567 * 10 9 8 12 12 C 1.54328 * 110.85179 * 288.69146 * 10 9 8 13 13 N 1.47025 * 107.26728 * 219.67239 * 12 10 9 14 14 C 1.36939 * 125.64927 * 178.84980 * 13 12 10 15 15 H 1.08000 * 120.00158 * 186.17703 * 14 13 12 16 16 C 1.38818 * 119.99962 * 6.17791 * 14 13 12 17 17 N 1.31622 * 119.99672 * 7.45019 * 16 14 13 18 18 Si 1.86796 * 119.99722 * 187.45289 * 16 14 13 19 19 H 1.48494 * 109.47213 * 84.99414 * 18 16 14 20 20 H 1.48507 * 109.46696 * 204.99271 * 18 16 14 21 21 H 1.48493 * 109.47259 * 324.98827 * 18 16 14 22 22 C 1.47419 * 108.69970 * 358.59166 * 13 12 10 23 23 C 1.54906 * 104.83676 * 24.35336 * 22 13 12 24 24 H 1.09008 * 111.00541 * 204.92083 * 23 22 13 25 25 O 1.42896 * 111.00598 * 81.10200 * 23 22 13 26 26 C 1.39522 * 118.88184 * 359.46268 * 5 4 3 27 27 C 1.50697 * 119.71680 * 180.25089 * 26 5 4 28 28 C 1.53000 * 109.47253 * 86.58719 * 27 26 5 29 29 C 1.53010 * 109.47082 * 206.58649 * 27 26 5 30 30 N 1.31701 * 120.56585 * 0.27709 * 26 5 4 31 31 H 1.09002 * 109.47167 * 269.98144 * 1 2 3 32 32 H 1.09000 * 109.46759 * 29.97830 * 1 2 3 33 33 H 1.08996 * 109.46822 * 149.97730 * 1 2 3 34 34 H 1.07997 * 120.35292 * 0.04319 * 3 2 1 35 35 H 1.08001 * 120.85847 * 180.30136 * 4 3 2 36 36 H 0.96997 * 120.00211 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.46951 * 60.00099 * 9 8 6 38 38 H 1.08991 * 109.47128 * 300.00079 * 9 8 6 39 39 H 1.09004 * 109.98893 * 100.20342 * 12 10 9 40 40 H 1.08993 * 109.78400 * 339.03253 * 12 10 9 41 41 H 0.97006 * 119.99345 * 179.97438 * 17 16 14 42 42 H 1.09005 * 110.36675 * 143.19684 * 22 13 12 43 43 H 1.09005 * 110.36547 * 265.40247 * 22 13 12 44 44 H 0.96703 * 113.99598 * 61.45314 * 25 23 22 45 45 H 1.08999 * 109.47458 * 326.58266 * 27 26 5 46 46 H 1.09003 * 109.46795 * 59.99580 * 28 27 26 47 47 H 1.08997 * 109.47167 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.46734 * 300.00131 * 28 27 26 49 49 H 1.08995 * 109.46714 * 59.99767 * 29 27 26 50 50 H 1.09000 * 109.46965 * 180.02562 * 29 27 26 51 51 H 1.08999 * 109.46662 * 300.00105 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0054 5 6 4.2312 -0.0340 -0.0008 6 6 5.7083 -0.0967 -0.0013 7 8 6.2712 -1.1689 0.1036 8 7 6.4307 1.0351 -0.1181 9 6 7.8945 0.9729 -0.1191 10 6 8.4647 2.3853 -0.2639 11 1 8.0276 3.0566 0.4753 12 6 8.2338 2.9274 -1.6903 13 7 9.4475 3.6596 -2.0807 14 6 9.6552 4.2753 -3.2861 15 1 10.6201 4.7032 -3.5148 16 6 8.6254 4.3496 -4.2141 17 7 7.4120 3.9616 -3.8830 18 14 8.9619 5.0000 -5.9325 19 1 9.4640 3.8965 -6.7899 20 1 7.7067 5.5440 -6.5103 21 1 9.9822 6.0767 -5.8633 22 6 10.4014 3.6265 -0.9572 23 6 10.0115 2.3678 -0.1428 24 1 10.3230 2.4635 0.8975 25 8 10.5588 1.1866 -0.7319 26 6 3.4716 -1.2043 -0.0007 27 6 4.1627 -2.5435 -0.0016 28 6 4.4739 -2.9578 1.4380 29 6 3.2498 -3.5881 -0.6470 30 7 2.1558 -1.1487 -0.0003 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6444 2.1381 0.0007 35 1 4.1276 2.1264 0.0104 36 1 5.9816 1.8907 -0.2015 37 1 8.2314 0.3581 -0.9537 38 1 8.2402 0.5354 0.8173 39 1 7.3762 3.6002 -1.6990 40 1 8.0641 2.0983 -2.3771 41 1 6.6924 4.0139 -4.5314 42 1 11.4222 3.5368 -1.3288 43 1 10.2986 4.5230 -0.3457 44 1 11.5252 1.1761 -0.7670 45 1 5.0912 -2.4728 -0.5682 46 1 3.5453 -3.0285 2.0044 47 1 4.9733 -3.9266 1.4373 48 1 5.1242 -2.2136 1.8977 49 1 3.0282 -3.2929 -1.6725 50 1 3.7495 -4.5568 -0.6472 51 1 2.3213 -3.6587 -0.0805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958283729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:03 Heat of formation + Delta-G solvation = -29.923206 kcal Electronic energy + Delta-G solvation = -31301.000558 eV Core-core repulsion = 27200.856211 eV Total energy + Delta-G solvation = -4100.144348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.94612 -39.14328 -38.22709 -35.82318 -34.86935 -34.39131 -33.21595 -31.95389 -31.47177 -30.02824 -28.21688 -27.41568 -26.94820 -25.62772 -24.24881 -23.44843 -22.75160 -20.82791 -20.45377 -20.12984 -19.63756 -17.65700 -17.10311 -16.80665 -16.60242 -15.85528 -15.37751 -15.17854 -14.80950 -14.64105 -14.40274 -14.23406 -14.18732 -13.99242 -13.93649 -13.28775 -13.20698 -12.96886 -12.77334 -12.62312 -12.43870 -12.31299 -12.25677 -11.96626 -11.85959 -11.56730 -11.27181 -11.03473 -11.01671 -10.92151 -10.88026 -10.63251 -10.38417 -10.19905 -10.09918 -9.93803 -9.79880 -9.76727 -9.35668 -9.23654 -8.99732 -8.66286 -8.63442 -6.86623 -5.76173 -3.10462 0.61287 1.12545 2.94771 3.31921 3.37715 3.42900 3.44029 3.76850 4.03020 4.45718 4.48462 4.55741 4.59727 4.72002 4.90273 5.14161 5.17582 5.24095 5.26159 5.28350 5.32010 5.35792 5.37308 5.41481 5.47580 5.57803 5.71187 5.75839 5.78405 5.84324 5.87385 5.90617 5.95852 5.97726 6.04419 6.11385 6.17471 6.34518 6.42458 6.44046 6.44356 6.49359 6.62659 6.65764 6.74709 7.44192 7.53566 7.67551 7.72948 7.87668 8.07992 8.20675 8.37845 9.15610 9.76680 10.41841 11.34491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002939 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.064010 B = 9524.654709 C =10898.897929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.149 3.851 3 C -0.187 4.187 4 C -0.034 4.034 5 C -0.191 4.191 6 C 0.560 3.440 7 O -0.530 6.530 8 N -0.716 5.716 9 C 0.147 3.853 10 C -0.125 4.125 11 H 0.082 0.918 12 C 0.185 3.815 13 N -0.598 5.598 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.104 3.896 23 C 0.097 3.903 24 H 0.057 0.943 25 O -0.551 6.551 26 C 0.201 3.799 27 C -0.058 4.058 28 C -0.125 4.125 29 C -0.136 4.136 30 N -0.486 5.486 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.252 0.748 42 H 0.043 0.957 43 H 0.025 0.975 44 H 0.372 0.628 45 H 0.120 0.880 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -7.328 12.374 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.011 3.989 3 C -0.207 4.207 4 C -0.060 4.060 5 C -0.196 4.196 6 C 0.347 3.653 7 O -0.409 6.409 8 N -0.366 5.366 9 C 0.024 3.976 10 C -0.144 4.144 11 H 0.100 0.900 12 C 0.061 3.939 13 N -0.324 5.324 14 C -0.357 4.357 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.022 4.022 23 C 0.037 3.963 24 H 0.075 0.925 25 O -0.356 6.356 26 C 0.062 3.938 27 C -0.077 4.077 28 C -0.183 4.183 29 C -0.194 4.194 30 N -0.195 5.195 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.235 0.765 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.218 0.782 45 H 0.138 0.862 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.221 -8.939 12.186 18.245 hybrid contribution 0.974 2.090 -1.005 2.515 sum -9.248 -6.849 11.180 16.045 Atomic orbital electron populations 1.20762 0.88646 1.03705 1.03169 1.21509 0.97160 0.88347 0.91912 1.21879 0.94524 0.99509 1.04771 1.21816 0.94763 0.97430 0.92016 1.20814 0.94770 0.94809 1.09241 1.17936 0.86110 0.84307 0.76984 1.90689 1.72243 1.27924 1.50056 1.45987 1.08096 1.09105 1.73453 1.21159 0.77195 0.97047 1.02238 1.22861 0.93742 0.95666 1.02150 0.89986 1.21240 0.90212 0.95018 0.87474 1.44344 1.14110 1.62231 1.11757 1.19018 0.96597 1.29853 0.90256 0.90561 1.24781 0.95322 1.01409 0.98772 1.69918 0.99745 1.53236 1.33783 0.86142 0.76897 0.78371 0.84369 1.21530 1.21698 1.20758 1.22266 0.94629 0.94667 0.90671 1.22880 0.93365 0.85809 0.94274 0.92499 1.86509 1.24819 1.39760 1.84510 1.21443 0.88465 0.94878 0.89053 1.20532 0.99336 0.88724 0.99113 1.21605 1.00678 1.01513 0.94486 1.21728 0.99658 0.97574 1.00424 1.67427 1.09020 1.28747 1.14319 0.90205 0.90465 0.90294 0.84258 0.84159 0.76483 0.90201 0.92004 0.92515 0.94489 0.93770 0.93909 0.95749 0.78157 0.86244 0.93516 0.92151 0.92203 0.93188 0.92826 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 36.01 0.37 -0.45 16 2 C 0.15 1.68 6.78 -82.51 -0.56 1.12 16 3 C -0.19 -1.98 9.72 -39.49 -0.38 -2.37 16 4 C -0.03 -0.41 9.63 -38.87 -0.37 -0.78 16 5 C -0.19 -2.74 5.89 -104.82 -0.62 -3.36 16 6 C 0.56 8.96 7.71 -12.33 -0.10 8.87 16 7 O -0.53 -9.51 12.03 5.32 0.06 -9.45 16 8 N -0.72 -10.98 5.42 -61.25 -0.33 -11.32 16 9 C 0.15 2.46 4.50 -4.04 -0.02 2.44 16 10 C -0.12 -2.17 2.88 -88.78 -0.26 -2.42 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 12 C 0.19 4.26 4.94 -3.06 -0.02 4.25 16 13 N -0.60 -14.81 3.39 -170.07 -0.58 -15.38 16 14 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 15 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 16 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 17 N -0.92 -26.34 10.48 55.49 0.58 -25.76 16 18 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.10 2.03 6.96 -2.53 -0.02 2.01 16 23 C 0.10 1.60 4.17 -24.58 -0.10 1.50 16 24 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 25 O -0.55 -9.24 12.34 -35.23 -0.43 -9.68 16 26 C 0.20 2.87 5.81 -82.17 -0.48 2.40 16 27 C -0.06 -0.80 2.37 -91.77 -0.22 -1.02 16 28 C -0.13 -1.58 8.80 37.16 0.33 -1.25 16 29 C -0.14 -1.64 8.70 37.16 0.32 -1.32 16 30 N -0.49 -6.49 9.06 -5.42 -0.05 -6.54 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.42 6.57 -52.49 -0.34 1.07 16 36 H 0.40 5.54 6.61 -40.82 -0.27 5.27 16 37 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.43 7.00 -51.93 -0.36 1.06 16 40 H 0.04 0.98 7.45 -51.93 -0.39 0.60 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.37 4.62 9.11 45.56 0.42 5.03 16 45 H 0.12 1.89 5.60 -51.93 -0.29 1.60 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.83 7.13 -51.93 -0.37 0.46 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.74 7.77 -51.93 -0.40 0.33 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -33.25 404.95 -9.48 -42.74 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.44 Total: 9.43 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.37 Total: 2.91 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.38 Total: -59.00 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.37 Total: -19.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.25 -9.48 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.812 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds