Wall clock time and date at job start Wed Apr 1 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38350 * 119.45774 * 2 1 4 4 C 1.38362 * 119.29813 * 179.74266 * 3 2 1 5 5 C 1.40023 * 118.28926 * 0.53604 * 4 3 2 6 6 C 1.47842 * 120.56033 * 179.73743 * 5 4 3 7 7 O 1.21553 * 120.00076 * 173.98535 * 6 5 4 8 8 N 1.34771 * 119.99827 * 353.98090 * 6 5 4 9 9 C 1.46505 * 119.99957 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.78025 * 51.76567 * 10 9 8 12 12 C 1.54328 * 110.85179 * 288.69146 * 10 9 8 13 13 N 1.47025 * 107.26728 * 219.67239 * 12 10 9 14 14 C 1.36939 * 125.64927 * 178.84980 * 13 12 10 15 15 H 1.08000 * 120.00158 * 186.17703 * 14 13 12 16 16 C 1.38818 * 119.99962 * 6.17791 * 14 13 12 17 17 N 1.31622 * 119.99672 * 7.45019 * 16 14 13 18 18 Si 1.86796 * 119.99722 * 187.45289 * 16 14 13 19 19 H 1.48494 * 109.47213 * 84.99414 * 18 16 14 20 20 H 1.48507 * 109.46696 * 204.99271 * 18 16 14 21 21 H 1.48493 * 109.47259 * 324.98827 * 18 16 14 22 22 C 1.47419 * 108.69970 * 358.59166 * 13 12 10 23 23 C 1.54906 * 104.83676 * 24.35336 * 22 13 12 24 24 H 1.09008 * 111.00541 * 204.92083 * 23 22 13 25 25 O 1.42896 * 111.00598 * 81.10200 * 23 22 13 26 26 C 1.39522 * 118.88184 * 359.46268 * 5 4 3 27 27 C 1.50697 * 119.71680 * 180.25089 * 26 5 4 28 28 C 1.53000 * 109.47253 * 86.58719 * 27 26 5 29 29 C 1.53010 * 109.47082 * 206.58649 * 27 26 5 30 30 N 1.31701 * 120.56585 * 0.27709 * 26 5 4 31 31 H 1.09002 * 109.47167 * 269.98144 * 1 2 3 32 32 H 1.09000 * 109.46759 * 29.97830 * 1 2 3 33 33 H 1.08996 * 109.46822 * 149.97730 * 1 2 3 34 34 H 1.07997 * 120.35292 * 0.04319 * 3 2 1 35 35 H 1.08001 * 120.85847 * 180.30136 * 4 3 2 36 36 H 0.96997 * 120.00211 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.46951 * 60.00099 * 9 8 6 38 38 H 1.08991 * 109.47128 * 300.00079 * 9 8 6 39 39 H 1.09004 * 109.98893 * 100.20342 * 12 10 9 40 40 H 1.08993 * 109.78400 * 339.03253 * 12 10 9 41 41 H 0.97006 * 119.99345 * 179.97438 * 17 16 14 42 42 H 1.09005 * 110.36675 * 143.19684 * 22 13 12 43 43 H 1.09005 * 110.36547 * 265.40247 * 22 13 12 44 44 H 0.96703 * 113.99598 * 61.45314 * 25 23 22 45 45 H 1.08999 * 109.47458 * 326.58266 * 27 26 5 46 46 H 1.09003 * 109.46795 * 59.99580 * 28 27 26 47 47 H 1.08997 * 109.47167 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.46734 * 300.00131 * 28 27 26 49 49 H 1.08995 * 109.46714 * 59.99767 * 29 27 26 50 50 H 1.09000 * 109.46965 * 180.02562 * 29 27 26 51 51 H 1.08999 * 109.46662 * 300.00105 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0054 5 6 4.2312 -0.0340 -0.0008 6 6 5.7083 -0.0967 -0.0013 7 8 6.2712 -1.1689 0.1036 8 7 6.4307 1.0351 -0.1181 9 6 7.8945 0.9729 -0.1191 10 6 8.4647 2.3853 -0.2639 11 1 8.0276 3.0566 0.4753 12 6 8.2338 2.9274 -1.6903 13 7 9.4475 3.6596 -2.0807 14 6 9.6552 4.2753 -3.2861 15 1 10.6201 4.7032 -3.5148 16 6 8.6254 4.3496 -4.2141 17 7 7.4120 3.9616 -3.8830 18 14 8.9619 5.0000 -5.9325 19 1 9.4640 3.8965 -6.7899 20 1 7.7067 5.5440 -6.5103 21 1 9.9822 6.0767 -5.8633 22 6 10.4014 3.6265 -0.9572 23 6 10.0115 2.3678 -0.1428 24 1 10.3230 2.4635 0.8975 25 8 10.5588 1.1866 -0.7319 26 6 3.4716 -1.2043 -0.0007 27 6 4.1627 -2.5435 -0.0016 28 6 4.4739 -2.9578 1.4380 29 6 3.2498 -3.5881 -0.6470 30 7 2.1558 -1.1487 -0.0003 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6444 2.1381 0.0007 35 1 4.1276 2.1264 0.0104 36 1 5.9816 1.8907 -0.2015 37 1 8.2314 0.3581 -0.9537 38 1 8.2402 0.5354 0.8173 39 1 7.3762 3.6002 -1.6990 40 1 8.0641 2.0983 -2.3771 41 1 6.6924 4.0139 -4.5314 42 1 11.4222 3.5368 -1.3288 43 1 10.2986 4.5230 -0.3457 44 1 11.5252 1.1761 -0.7670 45 1 5.0912 -2.4728 -0.5682 46 1 3.5453 -3.0285 2.0044 47 1 4.9733 -3.9266 1.4373 48 1 5.1242 -2.2136 1.8977 49 1 3.0282 -3.2929 -1.6725 50 1 3.7495 -4.5568 -0.6472 51 1 2.3213 -3.6587 -0.0805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958283729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:02 Heat of formation + Delta-G solvation = -53.546548 kcal Electronic energy + Delta-G solvation = -31302.024943 eV Core-core repulsion = 27200.856211 eV Total energy + Delta-G solvation = -4101.168733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98230 -40.42051 -39.62287 -36.89101 -36.38428 -35.76097 -34.30614 -33.67763 -32.37170 -31.60612 -29.32172 -28.85637 -27.96067 -27.30785 -25.63379 -24.63435 -23.81385 -22.29589 -21.67749 -21.34431 -21.07998 -19.00091 -18.74350 -18.27306 -17.71706 -16.87602 -16.63609 -16.50692 -16.32511 -15.94197 -15.80093 -15.56351 -15.44501 -15.13530 -14.96132 -14.67927 -14.55555 -14.16788 -13.94404 -13.76492 -13.60102 -13.54061 -13.16980 -13.09774 -13.01329 -12.91793 -12.87641 -12.76804 -12.30775 -12.24353 -12.10886 -12.02908 -12.00281 -11.87759 -11.74248 -11.59108 -10.94112 -10.84487 -10.81453 -10.63603 -10.33777 -10.15253 -9.76281 -8.85603 -7.84892 -5.20267 -0.37938 0.18786 1.43787 1.46675 1.53468 1.79742 2.11054 2.48475 2.75336 3.12764 3.29760 3.35346 3.54414 3.61253 3.68827 3.71547 3.90603 3.93898 4.00806 4.02885 4.21486 4.29373 4.33309 4.36517 4.45566 4.52951 4.64479 4.69517 4.78221 4.81090 4.82728 4.89500 4.91525 4.94300 4.96525 4.99338 5.00822 5.13291 5.15600 5.20387 5.22832 5.29754 5.42900 5.44365 5.52572 5.64558 5.69357 5.74007 6.20001 6.45973 6.91485 7.00062 7.10371 7.14994 7.78101 8.41686 9.23624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002939 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.064010 B = 9524.654709 C =10898.897929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.143 3.857 3 C -0.182 4.182 4 C -0.038 4.038 5 C -0.214 4.214 6 C 0.557 3.443 7 O -0.556 6.556 8 N -0.713 5.713 9 C 0.161 3.839 10 C -0.112 4.112 11 H 0.111 0.889 12 C 0.200 3.800 13 N -0.623 5.623 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.064 4.064 17 N -0.945 5.945 18 Si 0.972 3.028 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.096 3.904 23 C 0.108 3.892 24 H 0.106 0.894 25 O -0.571 6.571 26 C 0.185 3.815 27 C -0.061 4.061 28 C -0.116 4.116 29 C -0.128 4.128 30 N -0.499 5.499 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.407 0.593 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.029 0.971 40 H -0.013 1.013 41 H 0.245 0.755 42 H 0.050 0.950 43 H 0.040 0.960 44 H 0.391 0.609 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -6.437 13.891 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.005 3.995 3 C -0.201 4.201 4 C -0.064 4.064 5 C -0.220 4.220 6 C 0.345 3.655 7 O -0.436 6.436 8 N -0.364 5.364 9 C 0.037 3.963 10 C -0.131 4.131 11 H 0.129 0.871 12 C 0.075 3.925 13 N -0.349 5.349 14 C -0.370 4.370 15 H 0.098 0.902 16 C -0.257 4.257 17 N -0.593 5.593 18 Si 0.801 3.199 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.029 4.029 23 C 0.048 3.952 24 H 0.123 0.877 25 O -0.379 6.379 26 C 0.047 3.953 27 C -0.079 4.079 28 C -0.174 4.174 29 C -0.185 4.185 30 N -0.209 5.209 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.243 0.757 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.005 0.995 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.241 0.759 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.754 -8.031 13.728 19.199 hybrid contribution 1.148 1.831 -1.480 2.619 sum -9.606 -6.200 12.248 16.755 Atomic orbital electron populations 1.20877 0.85883 1.04724 1.04473 1.22219 0.98993 0.88027 0.90261 1.22275 0.93937 1.00770 1.03153 1.22076 0.95765 0.97082 0.91464 1.20750 0.93613 0.96069 1.11538 1.18274 0.87047 0.83909 0.76286 1.90672 1.72983 1.28763 1.51222 1.45924 1.07595 1.09468 1.73387 1.20885 0.77991 0.96122 1.01273 1.22765 0.95423 0.96001 0.98936 0.87057 1.20884 0.89170 0.92574 0.89840 1.44673 1.15779 1.61979 1.12509 1.19398 0.96635 1.29288 0.91693 0.90219 1.25571 0.95380 1.02543 1.02228 1.70126 1.00277 1.54597 1.34336 0.85185 0.76748 0.77873 0.80090 1.21939 1.22011 1.19218 1.22560 0.93887 0.96786 0.89664 1.22918 0.92087 0.84149 0.96015 0.87651 1.86488 1.26791 1.39796 1.84861 1.21527 0.89146 0.94965 0.89702 1.20463 0.98545 0.89493 0.99443 1.21519 1.00715 1.01386 0.93769 1.21652 0.99557 0.97631 0.99663 1.67474 1.08401 1.30017 1.15046 0.88557 0.88198 0.90538 0.80857 0.82674 0.75654 0.93971 0.90521 0.95323 0.99518 0.94568 0.93146 0.94249 0.75940 0.88898 0.92696 0.91152 0.93903 0.94106 0.91530 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.16 71.24 0.72 -0.57 16 2 C 0.14 2.97 6.78 42.57 0.29 3.26 16 3 C -0.18 -3.48 9.72 22.33 0.22 -3.26 16 4 C -0.04 -0.88 9.63 22.73 0.22 -0.66 16 5 C -0.21 -6.27 5.89 -19.99 -0.12 -6.39 16 6 C 0.56 18.51 7.71 86.79 0.67 19.18 16 7 O -0.56 -20.94 12.03 -3.88 -0.05 -20.99 16 8 N -0.71 -22.34 5.42 -465.98 -2.53 -24.87 16 9 C 0.16 5.43 4.50 86.38 0.39 5.82 16 10 C -0.11 -3.78 2.88 -9.60 -0.03 -3.81 16 11 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 12 C 0.20 9.46 4.94 86.73 0.43 9.89 16 13 N -0.62 -31.01 3.39 -691.98 -2.35 -33.36 16 14 C -0.24 -13.35 10.26 84.03 0.86 -12.49 16 15 H 0.08 4.23 7.84 -2.91 -0.02 4.20 16 16 C -0.06 -3.61 5.45 84.86 0.46 -3.15 16 17 N -0.94 -55.94 10.48 21.65 0.23 -55.71 16 18 Si 0.97 45.81 29.56 68.60 2.03 47.84 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.10 3.57 6.96 86.86 0.60 4.17 16 23 C 0.11 3.30 4.17 31.99 0.13 3.43 16 24 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 25 O -0.57 -18.37 12.34 -148.98 -1.84 -20.21 16 26 C 0.19 5.40 5.81 42.89 0.25 5.65 16 27 C -0.06 -1.72 2.37 -11.54 -0.03 -1.75 16 28 C -0.12 -2.97 8.80 71.98 0.63 -2.34 16 29 C -0.13 -3.10 8.70 71.99 0.63 -2.47 16 30 N -0.50 -13.07 9.06 -171.05 -1.55 -14.62 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.16 3.00 6.57 -2.91 -0.02 2.98 16 36 H 0.41 11.40 6.61 -92.71 -0.61 10.79 16 37 H 0.04 1.75 7.53 -2.39 -0.02 1.73 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.03 1.49 7.00 -2.39 -0.02 1.48 16 40 H -0.01 -0.76 7.45 -2.39 -0.02 -0.78 16 41 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.39 8.93 9.11 -74.06 -0.67 8.25 16 45 H 0.09 3.15 5.60 -2.39 -0.01 3.13 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.04 1.22 7.13 -2.39 -0.02 1.21 16 49 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.07 1.54 7.77 -2.39 -0.02 1.52 16 Total: -1.00 -75.81 404.95 -0.06 -75.86 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.34 Total: 31.54 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.33 Total: 14.52 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -6.20 Total: -128.56 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.88 Total: -41.19 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.81 -0.06 -75.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.318 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds