Wall clock time and date at job start Wed Apr 1 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38353 * 119.46050 * 2 1 4 4 C 1.38360 * 119.30303 * 179.97438 * 3 2 1 5 5 C 1.40016 * 118.28784 * 359.97438 * 4 3 2 6 6 C 1.47848 * 120.55735 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99972 * 173.90255 * 6 5 4 8 8 N 1.34777 * 119.99637 * 353.62477 * 6 5 4 9 9 C 1.46507 * 119.99449 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46831 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.88856 * 51.11934 * 10 9 8 12 12 C 1.54917 * 111.00649 * 287.20144 * 10 9 8 13 13 N 1.47423 * 104.83116 * 204.91555 * 12 10 9 14 14 C 1.36934 * 125.65131 * 204.14715 * 13 12 10 15 15 H 1.08003 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00596 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99675 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00359 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46890 * 89.99609 * 18 16 14 20 20 H 1.48498 * 109.47000 * 209.99599 * 18 16 14 21 21 H 1.48504 * 109.46848 * 329.99946 * 18 16 14 22 22 C 1.47021 * 108.70490 * 24.12696 * 13 12 10 23 23 C 1.54330 * 107.26986 * 358.93999 * 22 13 12 24 24 H 1.08995 * 110.87137 * 96.24760 * 23 22 13 25 25 O 1.42899 * 110.71934 * 219.44485 * 23 22 13 26 26 C 1.39521 * 118.88421 * 0.25826 * 5 4 3 27 27 C 1.50700 * 119.71361 * 179.74742 * 26 5 4 28 28 C 1.53003 * 109.47199 * 86.67625 * 27 26 5 29 29 C 1.53007 * 109.46855 * 206.66844 * 27 26 5 30 30 N 1.31689 * 120.56361 * 359.47472 * 26 5 4 31 31 H 1.09002 * 109.47016 * 90.00778 * 1 2 3 32 32 H 1.08999 * 109.47157 * 210.00510 * 1 2 3 33 33 H 1.09003 * 109.47652 * 330.00592 * 1 2 3 34 34 H 1.08005 * 120.34749 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.85229 * 180.02562 * 4 3 2 36 36 H 0.96996 * 120.00242 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47414 * 300.00213 * 9 8 6 38 38 H 1.09000 * 109.46865 * 60.00664 * 9 8 6 39 39 H 1.08996 * 110.36195 * 323.75059 * 12 10 9 40 40 H 1.08994 * 110.36768 * 86.07420 * 12 10 9 41 41 H 0.97003 * 119.99798 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.88452 * 239.52511 * 22 13 12 43 43 H 1.09003 * 110.01513 * 118.42473 * 22 13 12 44 44 H 0.96702 * 114.00179 * 293.52473 * 25 23 22 45 45 H 1.08995 * 109.47819 * 326.66717 * 27 26 5 46 46 H 1.09000 * 109.46999 * 179.97438 * 28 27 26 47 47 H 1.09001 * 109.46678 * 299.98925 * 28 27 26 48 48 H 1.08997 * 109.47677 * 59.99386 * 28 27 26 49 49 H 1.08998 * 109.46918 * 59.99949 * 29 27 26 50 50 H 1.09000 * 109.47243 * 179.97438 * 29 27 26 51 51 H 1.09006 * 109.47221 * 300.00264 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2311 -0.0339 0.0016 6 6 5.7083 -0.0965 0.0017 7 8 6.2712 -1.1680 0.1144 8 7 6.4306 1.0338 -0.1289 9 6 7.8944 0.9718 -0.1283 10 6 8.4646 2.3822 -0.2905 11 1 8.0197 3.0667 0.4318 12 6 8.2687 2.8973 -1.7383 13 7 9.3311 3.9015 -1.9286 14 6 9.3002 4.9361 -2.8251 15 1 8.4434 5.0666 -3.4696 16 6 10.3703 5.8164 -2.9064 17 7 11.4146 5.6570 -2.1213 18 14 10.3283 7.2273 -4.1299 19 1 9.7170 8.4197 -3.4897 20 1 11.7124 7.5511 -4.5597 21 1 9.5221 6.8327 -5.3130 22 6 10.4293 3.6085 -0.9960 23 6 10.0113 2.3741 -0.1694 24 1 10.4269 1.4616 -0.5968 25 8 10.4124 2.5195 1.1944 26 6 3.4715 -1.2043 -0.0034 27 6 4.1628 -2.5434 -0.0081 28 6 4.4701 -2.9638 1.4306 29 6 3.2516 -3.5853 -0.6602 30 7 2.1558 -1.1486 0.0013 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6442 2.1382 -0.0004 35 1 4.1274 2.1265 0.0010 36 1 5.9814 1.8883 -0.2226 37 1 8.2396 0.5460 0.8138 38 1 8.2318 0.3466 -0.9550 39 1 8.3865 2.0808 -2.4506 40 1 7.2870 3.3583 -1.8474 41 1 12.1623 6.2724 -2.1778 42 1 10.5913 4.4598 -0.3349 43 1 11.3420 3.3912 -1.5509 44 1 11.3706 2.5206 1.3247 45 1 5.0927 -2.4704 -0.5719 46 1 4.9696 -3.9326 1.4272 47 1 5.1193 -2.2216 1.8951 48 1 3.5401 -3.0369 1.9944 49 1 3.0326 -3.2858 -1.6851 50 1 3.7517 -4.5538 -0.6641 51 1 2.3215 -3.6584 -0.0964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958283730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:05 Heat of formation + Delta-G solvation = -55.368551 kcal Electronic energy + Delta-G solvation = -30787.315209 eV Core-core repulsion = 26686.067468 eV Total energy + Delta-G solvation = -4101.247741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98328 -40.42002 -39.61185 -36.91885 -36.60654 -35.83197 -34.41719 -33.71415 -32.36188 -31.39485 -29.47725 -28.88871 -27.94419 -27.21511 -25.59388 -24.59785 -23.79761 -22.31178 -21.78758 -21.35100 -21.25291 -19.11164 -18.66644 -18.18536 -17.70083 -17.07109 -16.80996 -16.53901 -16.35700 -16.02251 -15.76381 -15.55112 -15.29612 -15.08459 -14.96042 -14.66062 -14.41622 -14.13330 -14.01421 -13.78540 -13.67533 -13.52156 -13.20681 -13.16207 -13.10774 -13.01264 -12.87644 -12.73771 -12.43556 -12.30416 -12.23757 -12.03755 -11.99884 -11.87621 -11.78542 -11.46152 -10.94011 -10.85788 -10.81153 -10.73719 -10.33347 -10.17879 -9.76331 -8.94553 -7.87284 -5.23784 -0.37379 0.20533 1.46261 1.47636 1.56294 1.80330 2.03935 2.47325 2.75742 3.13713 3.22947 3.33536 3.52916 3.56299 3.65016 3.72193 3.75767 3.89018 4.02032 4.14778 4.22528 4.30364 4.34341 4.37504 4.40398 4.46703 4.61242 4.69897 4.75560 4.79758 4.81013 4.84029 4.87565 4.90379 4.94571 4.98126 5.00353 5.14398 5.16992 5.19274 5.24922 5.33007 5.40669 5.43650 5.48001 5.53068 5.70064 5.70770 6.15601 6.44379 6.88039 6.93654 7.06294 7.13473 7.73153 8.36368 9.22840 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002392 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.074608 B =11702.877318 C =12993.438098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.182 4.182 4 C -0.037 4.037 5 C -0.214 4.214 6 C 0.560 3.440 7 O -0.553 6.553 8 N -0.711 5.711 9 C 0.149 3.851 10 C -0.089 4.089 11 H 0.088 0.912 12 C 0.139 3.861 13 N -0.625 5.625 14 C -0.242 4.242 15 H 0.087 0.913 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.161 3.839 23 C 0.097 3.903 24 H 0.075 0.925 25 O -0.569 6.569 26 C 0.186 3.814 27 C -0.059 4.059 28 C -0.119 4.119 29 C -0.128 4.128 30 N -0.502 5.502 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.247 0.753 42 H 0.019 0.981 43 H 0.012 0.988 44 H 0.393 0.607 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 -12.645 6.519 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.201 4.201 4 C -0.062 4.062 5 C -0.219 4.219 6 C 0.348 3.652 7 O -0.433 6.433 8 N -0.363 5.363 9 C 0.025 3.975 10 C -0.109 4.109 11 H 0.106 0.894 12 C 0.014 3.986 13 N -0.352 5.352 14 C -0.371 4.371 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.601 5.601 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.192 1.192 22 C 0.035 3.965 23 C 0.036 3.964 24 H 0.093 0.907 25 O -0.377 6.377 26 C 0.047 3.953 27 C -0.078 4.078 28 C -0.176 4.176 29 C -0.186 4.186 30 N -0.212 5.212 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.191 0.809 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.030 0.970 44 H 0.243 0.757 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.622 -13.980 6.622 25.779 hybrid contribution 1.665 2.245 -0.813 2.911 sum -18.957 -11.735 5.809 23.039 Atomic orbital electron populations 1.20878 0.86182 1.04757 1.04310 1.22187 0.98873 0.88142 0.90288 1.22279 0.94135 1.00623 1.03097 1.22095 0.95591 0.97160 0.91403 1.20721 0.93574 0.95971 1.11639 1.18222 0.86918 0.83838 0.76213 1.90697 1.72905 1.28883 1.50840 1.45818 1.07069 1.09758 1.73684 1.21127 0.78835 0.95280 1.02248 1.22410 0.94399 0.96233 0.97838 0.89407 1.21794 0.92427 0.91201 0.93139 1.44607 1.17510 1.30540 1.42535 1.19482 1.02432 1.02976 1.12167 0.89494 1.25668 0.96481 1.02144 1.01706 1.70163 1.08132 1.39454 1.42333 0.85073 0.76455 0.79086 0.78691 1.21239 1.22302 1.19220 1.21585 0.90222 0.93798 0.90879 1.22886 0.94426 0.96866 0.82207 0.90689 1.86387 1.29597 1.96654 1.25016 1.21523 0.89079 0.95029 0.89660 1.20464 0.98713 0.89521 0.99129 1.21537 1.00605 1.01380 0.94124 1.21654 0.99472 0.97693 0.99741 1.67465 1.08591 1.30102 1.15018 0.88960 0.90571 0.88051 0.80880 0.82147 0.75347 0.91033 0.91348 0.95314 0.92489 0.94399 0.96232 0.96969 0.75749 0.88331 0.91232 0.93930 0.93018 0.93752 0.91666 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.16 71.23 0.72 -0.27 16 2 C 0.14 2.38 6.78 42.57 0.29 2.67 16 3 C -0.18 -2.56 9.72 22.33 0.22 -2.34 16 4 C -0.04 -0.62 9.63 22.73 0.22 -0.40 16 5 C -0.21 -4.94 5.89 -19.99 -0.12 -5.06 16 6 C 0.56 14.74 7.70 86.79 0.67 15.41 16 7 O -0.55 -17.29 12.03 -3.89 -0.05 -17.34 16 8 N -0.71 -16.86 5.45 -465.95 -2.54 -19.40 16 9 C 0.15 4.04 5.13 86.38 0.44 4.48 16 10 C -0.09 -2.83 2.77 -9.40 -0.03 -2.86 16 11 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 12 C 0.14 5.19 6.65 86.86 0.58 5.76 16 13 N -0.62 -30.80 3.39 -691.99 -2.35 -33.15 16 14 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 17 N -0.95 -56.24 10.31 21.65 0.22 -56.02 16 18 Si 0.98 44.74 29.55 68.60 2.03 46.76 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C 0.16 7.68 5.15 86.73 0.45 8.12 16 23 C 0.10 3.43 3.80 31.78 0.12 3.55 16 24 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 25 O -0.57 -18.66 13.39 -148.98 -1.99 -20.66 16 26 C 0.19 4.50 5.81 42.89 0.25 4.75 16 27 C -0.06 -1.43 2.37 -11.54 -0.03 -1.45 16 28 C -0.12 -2.69 8.80 71.98 0.63 -2.06 16 29 C -0.13 -2.61 8.70 71.98 0.63 -1.98 16 30 N -0.50 -11.07 9.06 -171.07 -1.55 -12.62 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 1.92 6.57 -2.91 -0.02 1.90 16 36 H 0.41 7.93 6.62 -92.71 -0.61 7.32 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.93 7.96 -2.39 -0.02 1.91 16 39 H 0.03 1.07 7.90 -2.39 -0.02 1.05 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.02 1.07 7.30 -2.39 -0.02 1.05 16 43 H 0.01 0.65 7.50 -2.39 -0.02 0.63 16 44 H 0.39 9.96 9.12 -74.06 -0.68 9.29 16 45 H 0.10 2.76 5.61 -2.39 -0.01 2.74 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.10 7.12 -2.39 -0.02 1.08 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 49 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.06 1.27 7.77 -2.38 -0.02 1.25 16 Total: -1.00 -72.43 406.40 -0.20 -72.63 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.34 Total: 26.96 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.37 Total: 12.82 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.22 Total: -121.18 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -2.04 Total: -37.99 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.43 -0.20 -72.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.261 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds