Wall clock time and date at job start Wed Apr 1 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31699 * 119.71363 * 2 1 4 4 C 1.31927 * 121.87695 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.45889 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46526 * 95.00158 * 5 4 3 7 7 C 1.52993 * 109.47036 * 214.99879 * 5 4 3 8 8 C 1.38351 * 121.08306 * 359.97438 * 4 3 2 9 9 C 1.38364 * 119.29871 * 359.71664 * 8 4 3 10 10 C 1.39522 * 119.71767 * 179.97438 * 2 1 3 11 11 C 1.47831 * 120.55968 * 0.03106 * 10 2 1 12 12 O 1.21560 * 120.00015 * 354.21504 * 11 10 2 13 13 N 1.34773 * 120.00177 * 174.21835 * 11 10 2 14 14 C 1.46504 * 120.00110 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46897 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.64385 * 303.31074 * 15 14 13 17 17 C 1.54328 * 110.72341 * 66.45468 * 15 14 13 18 18 N 1.47014 * 107.40160 * 140.47791 * 17 15 14 19 19 C 1.36941 * 125.64922 * 181.10582 * 18 17 15 20 20 H 1.08001 * 120.00301 * 156.32367 * 19 18 17 21 21 C 1.38809 * 119.99523 * 336.31632 * 19 18 17 22 22 N 1.31624 * 119.99911 * 156.74550 * 21 19 18 23 23 Si 1.86804 * 120.00547 * 336.75302 * 21 19 18 24 24 H 1.48499 * 109.47170 * 85.64671 * 23 21 19 25 25 H 1.48497 * 109.47072 * 205.65137 * 23 21 19 26 26 H 1.48503 * 109.46567 * 325.65242 * 23 21 19 27 27 C 1.47749 * 108.53189 * 1.18329 * 18 17 15 28 28 C 1.54909 * 104.83892 * 335.74764 * 27 18 17 29 29 H 1.08994 * 111.04041 * 279.00605 * 28 27 18 30 30 O 1.42905 * 111.00059 * 155.16903 * 28 27 18 31 31 H 1.08995 * 109.47743 * 265.00794 * 1 2 3 32 32 H 1.09004 * 109.47711 * 25.01428 * 1 2 3 33 33 H 1.09001 * 109.47131 * 145.01210 * 1 2 3 34 34 H 1.08998 * 109.46824 * 335.00295 * 5 4 3 35 35 H 1.08998 * 109.47457 * 60.00525 * 6 5 4 36 36 H 1.09004 * 109.46301 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.47223 * 299.99402 * 6 5 4 38 38 H 1.08998 * 109.47654 * 299.99908 * 7 5 4 39 39 H 1.08998 * 109.46955 * 60.00609 * 7 5 4 40 40 H 1.09004 * 109.46923 * 179.97438 * 7 5 4 41 41 H 1.07992 * 120.35247 * 180.02562 * 8 4 3 42 42 H 1.08001 * 120.85176 * 180.29743 * 9 8 4 43 43 H 0.97002 * 120.00420 * 359.97438 * 13 11 10 44 44 H 1.08998 * 109.47011 * 60.00407 * 14 13 11 45 45 H 1.09001 * 109.47275 * 299.99678 * 14 13 11 46 46 H 1.08994 * 109.87758 * 259.97361 * 17 15 14 47 47 H 1.09001 * 109.87654 * 20.98178 * 17 15 14 48 48 H 0.96999 * 120.00405 * 179.97438 * 22 21 19 49 49 H 1.09008 * 110.28990 * 216.95014 * 27 18 17 50 50 H 1.08996 * 110.53207 * 94.67599 * 27 18 17 51 51 H 0.96693 * 113.99831 * 67.80968 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.1692 2.5329 0.0011 6 6 4.5142 2.9280 1.4383 7 6 5.4534 2.4444 -0.8258 8 6 4.2366 0.0366 0.0016 9 6 3.5986 -1.1912 0.0081 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4955 0.0004 12 8 0.2547 -2.5041 0.1060 13 7 2.1400 -3.6565 -0.1166 14 6 1.4137 -4.9288 -0.1162 15 6 2.4073 -6.0833 -0.2603 16 1 3.0059 -5.9647 -1.1635 17 6 3.3127 -6.1833 0.9855 18 7 3.4946 -7.6115 1.2833 19 6 4.2169 -8.1232 2.3282 20 1 4.0005 -9.1137 2.7004 21 6 5.2272 -7.3688 2.9087 22 7 5.6073 -7.6176 4.1441 23 14 6.0474 -6.0004 1.9369 24 1 5.2527 -4.7531 2.0711 25 1 7.4177 -5.7732 2.4619 26 1 6.1235 -6.3872 0.5052 27 6 2.7693 -8.3995 0.2655 28 6 1.6676 -7.4472 -0.2626 29 1 0.8109 -7.4282 0.4110 30 8 1.2674 -7.8107 -1.5855 31 1 -0.3634 -0.0894 1.0237 32 1 -0.3635 0.9313 -0.4345 33 1 -0.3633 -0.8419 -0.5893 34 1 3.5082 3.2829 -0.4333 35 1 5.1751 2.1779 1.8727 36 1 5.0137 3.8968 1.4387 37 1 3.5993 2.9910 2.0274 38 1 6.1143 1.6943 -0.3915 39 1 5.2075 2.1629 -1.8497 40 1 5.9530 3.4132 -0.8258 41 1 5.3151 0.0911 0.0024 42 1 4.1661 -2.1102 0.0139 43 1 3.1063 -3.6498 -0.2012 44 1 0.7119 -4.9468 -0.9500 45 1 0.8674 -5.0350 0.8211 46 1 4.2783 -5.7216 0.7799 47 1 2.8365 -5.6861 1.8306 48 1 6.3136 -7.0908 4.5497 49 1 2.3211 -9.2830 0.7202 50 1 3.4402 -8.6890 -0.5433 51 1 0.8011 -8.6561 -1.6370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958409063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:14 Heat of formation + Delta-G solvation = -27.201642 kcal Electronic energy + Delta-G solvation = -30921.504552 eV Core-core repulsion = 26821.478220 eV Total energy + Delta-G solvation = -4100.026332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08358 -39.50994 -38.53366 -36.04416 -35.56525 -34.94351 -33.23638 -32.24522 -31.68883 -30.42347 -28.25120 -27.84457 -27.32702 -25.91189 -24.82371 -23.48303 -22.66276 -21.30852 -20.64079 -20.44361 -20.03861 -18.01762 -17.42674 -17.09217 -17.04832 -16.02170 -15.69354 -15.63162 -15.30180 -15.01745 -14.68351 -14.49217 -14.27011 -13.84866 -13.78079 -13.60523 -13.47322 -13.37073 -13.17553 -12.95691 -12.91439 -12.53705 -12.30278 -12.17200 -12.11284 -11.92146 -11.74951 -11.60608 -11.50938 -11.42227 -11.29823 -11.01197 -10.64779 -10.49809 -10.13390 -10.07848 -10.00048 -9.79267 -9.52305 -9.49093 -9.22660 -8.91626 -8.68495 -7.15728 -6.07898 -3.40872 0.44471 0.97278 2.73996 3.02920 3.18403 3.34615 3.38843 3.58250 3.79333 4.23831 4.28174 4.42409 4.45064 4.51342 4.65912 4.72096 4.73599 4.83041 4.85514 4.92667 5.03979 5.16912 5.21098 5.27959 5.33615 5.35334 5.43221 5.47296 5.52999 5.54866 5.58990 5.60648 5.67701 5.73990 5.77719 5.83697 5.88613 5.91742 5.98290 6.04895 6.08804 6.24253 6.34179 6.42221 6.47216 6.53252 6.58873 7.38164 7.59744 7.71968 7.77928 8.10534 8.19658 8.70339 9.55295 10.04074 11.08349 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003110 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.770308 B = 9002.394037 C =10887.869266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.195 3.805 3 N -0.490 5.490 4 C 0.164 3.836 5 C -0.049 4.049 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.186 4.186 9 C -0.035 4.035 10 C -0.196 4.196 11 C 0.564 3.436 12 O -0.530 6.530 13 N -0.721 5.721 14 C 0.134 3.866 15 C -0.107 4.107 16 H 0.090 0.910 17 C 0.127 3.873 18 N -0.604 5.604 19 C -0.247 4.247 20 H 0.092 0.908 21 C 0.027 3.973 22 N -0.901 5.901 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.277 1.277 27 C 0.103 3.897 28 C 0.098 3.902 29 H 0.073 0.927 30 O -0.564 6.564 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.399 0.601 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.047 0.953 48 H 0.265 0.735 49 H 0.053 0.947 50 H 0.035 0.965 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 16.775 -11.224 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.056 3.944 3 N -0.199 5.199 4 C 0.025 3.975 5 C -0.068 4.068 6 C -0.200 4.200 7 C -0.206 4.206 8 C -0.205 4.205 9 C -0.062 4.062 10 C -0.201 4.201 11 C 0.351 3.649 12 O -0.409 6.409 13 N -0.372 5.372 14 C 0.011 3.989 15 C -0.127 4.127 16 H 0.108 0.892 17 C 0.002 3.998 18 N -0.332 5.332 19 C -0.374 4.374 20 H 0.110 0.890 21 C -0.172 4.172 22 N -0.544 5.544 23 Si 0.713 3.287 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.203 1.203 27 C -0.023 4.023 28 C 0.037 3.963 29 H 0.090 0.910 30 O -0.368 6.368 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.235 0.765 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.614 18.058 -11.069 21.911 hybrid contribution 1.611 -0.669 -0.263 1.764 sum -4.002 17.389 -11.332 21.138 Atomic orbital electron populations 1.21089 0.87431 1.03991 1.04266 1.21498 0.97521 0.86314 0.89059 1.67472 1.09221 1.28736 1.14501 1.21459 0.89327 0.95469 0.91212 1.20118 0.96512 0.92582 0.97622 1.21810 1.01993 1.01646 0.94543 1.21942 0.96324 1.02564 0.99818 1.21916 1.01896 0.92286 1.04449 1.21822 0.93257 0.98969 0.92112 1.20760 0.94306 0.95095 1.09940 1.17940 0.87041 0.83272 0.76638 1.90712 1.13328 1.87025 1.49792 1.45944 1.11054 1.06006 1.74180 1.21426 0.94116 0.80566 1.02798 1.22439 0.96871 0.93145 1.00213 0.89195 1.21719 0.95803 0.88327 0.93977 1.44643 1.59802 0.99421 1.29364 1.18621 1.10708 1.03241 1.04816 0.89037 1.25101 0.97652 0.98366 0.96129 1.69843 1.31215 1.42139 1.11165 0.86916 0.78591 0.82359 0.80795 1.21264 1.22886 1.20331 1.22336 0.93076 0.94563 0.92301 1.22932 0.96172 0.93920 0.83246 0.90961 1.86453 1.78997 1.43049 1.28349 0.89882 0.91359 0.87644 0.89000 0.92286 0.91649 0.92166 0.91926 0.92258 0.91616 0.83965 0.84381 0.76547 0.90598 0.90702 0.95712 0.93542 0.92531 0.92904 0.94689 0.77510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.95 36.00 0.32 -1.03 16 2 C 0.19 2.60 6.82 -82.17 -0.56 2.04 16 3 N -0.49 -6.31 10.17 -5.42 -0.06 -6.36 16 4 C 0.16 1.80 5.79 -82.51 -0.48 1.32 16 5 C -0.05 -0.40 3.23 -91.77 -0.30 -0.70 16 6 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 7 C -0.15 -0.95 8.62 37.15 0.32 -0.63 16 8 C -0.19 -1.94 9.16 -39.49 -0.36 -2.30 16 9 C -0.04 -0.41 9.63 -38.87 -0.37 -0.79 16 10 C -0.20 -2.62 5.89 -104.83 -0.62 -3.24 16 11 C 0.56 8.30 7.71 -12.34 -0.10 8.21 16 12 O -0.53 -8.77 13.33 5.31 0.07 -8.70 16 13 N -0.72 -10.09 5.35 -61.25 -0.33 -10.41 16 14 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 15 C -0.11 -1.72 2.75 -88.78 -0.24 -1.97 16 16 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 17 C 0.13 2.59 4.84 -3.07 -0.01 2.57 16 18 N -0.60 -14.03 3.14 -169.81 -0.53 -14.56 16 19 C -0.25 -6.81 10.54 -15.06 -0.16 -6.96 16 20 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 21 C 0.03 0.77 5.42 -17.43 -0.09 0.68 16 22 N -0.90 -27.12 13.97 55.49 0.78 -26.34 16 23 Si 0.88 21.63 24.53 -169.99 -4.17 17.46 16 24 H -0.29 -6.56 6.82 56.52 0.39 -6.17 16 25 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.70 7.03 56.52 0.40 -6.30 16 27 C 0.10 1.92 6.99 -2.35 -0.02 1.90 16 28 C 0.10 1.49 3.88 -24.58 -0.10 1.40 16 29 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 30 O -0.56 -7.54 13.47 -35.23 -0.47 -8.02 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.39 5.72 -51.93 -0.30 1.09 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.37 6.48 -51.93 -0.34 0.04 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.14 1.14 6.29 -52.49 -0.33 0.81 16 42 H 0.14 1.40 6.57 -52.49 -0.34 1.05 16 43 H 0.40 5.11 6.47 -40.82 -0.26 4.85 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 46 H 0.03 0.54 3.50 -51.93 -0.18 0.36 16 47 H 0.05 1.00 7.76 -51.93 -0.40 0.59 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.38 3.34 9.12 45.56 0.42 3.76 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -33.43 401.41 -8.34 -41.77 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.23 Total: 7.41 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.44 Total: 1.71 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.14 Total: -57.68 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.40 Total: -16.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.17 Total: 17.46 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.43 -8.34 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.565 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds