Wall clock time and date at job start Wed Apr 1 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31699 * 119.71363 * 2 1 4 4 C 1.31927 * 121.87695 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.45889 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46526 * 95.00158 * 5 4 3 7 7 C 1.52993 * 109.47036 * 214.99879 * 5 4 3 8 8 C 1.38351 * 121.08306 * 359.97438 * 4 3 2 9 9 C 1.38364 * 119.29871 * 359.71664 * 8 4 3 10 10 C 1.39522 * 119.71767 * 179.97438 * 2 1 3 11 11 C 1.47831 * 120.55968 * 0.03106 * 10 2 1 12 12 O 1.21560 * 120.00015 * 354.21504 * 11 10 2 13 13 N 1.34773 * 120.00177 * 174.21835 * 11 10 2 14 14 C 1.46504 * 120.00110 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46897 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.64385 * 303.31074 * 15 14 13 17 17 C 1.54328 * 110.72341 * 66.45468 * 15 14 13 18 18 N 1.47014 * 107.40160 * 140.47791 * 17 15 14 19 19 C 1.36941 * 125.64922 * 181.10582 * 18 17 15 20 20 H 1.08001 * 120.00301 * 156.32367 * 19 18 17 21 21 C 1.38809 * 119.99523 * 336.31632 * 19 18 17 22 22 N 1.31624 * 119.99911 * 156.74550 * 21 19 18 23 23 Si 1.86804 * 120.00547 * 336.75302 * 21 19 18 24 24 H 1.48499 * 109.47170 * 85.64671 * 23 21 19 25 25 H 1.48497 * 109.47072 * 205.65137 * 23 21 19 26 26 H 1.48503 * 109.46567 * 325.65242 * 23 21 19 27 27 C 1.47749 * 108.53189 * 1.18329 * 18 17 15 28 28 C 1.54909 * 104.83892 * 335.74764 * 27 18 17 29 29 H 1.08994 * 111.04041 * 279.00605 * 28 27 18 30 30 O 1.42905 * 111.00059 * 155.16903 * 28 27 18 31 31 H 1.08995 * 109.47743 * 265.00794 * 1 2 3 32 32 H 1.09004 * 109.47711 * 25.01428 * 1 2 3 33 33 H 1.09001 * 109.47131 * 145.01210 * 1 2 3 34 34 H 1.08998 * 109.46824 * 335.00295 * 5 4 3 35 35 H 1.08998 * 109.47457 * 60.00525 * 6 5 4 36 36 H 1.09004 * 109.46301 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.47223 * 299.99402 * 6 5 4 38 38 H 1.08998 * 109.47654 * 299.99908 * 7 5 4 39 39 H 1.08998 * 109.46955 * 60.00609 * 7 5 4 40 40 H 1.09004 * 109.46923 * 179.97438 * 7 5 4 41 41 H 1.07992 * 120.35247 * 180.02562 * 8 4 3 42 42 H 1.08001 * 120.85176 * 180.29743 * 9 8 4 43 43 H 0.97002 * 120.00420 * 359.97438 * 13 11 10 44 44 H 1.08998 * 109.47011 * 60.00407 * 14 13 11 45 45 H 1.09001 * 109.47275 * 299.99678 * 14 13 11 46 46 H 1.08994 * 109.87758 * 259.97361 * 17 15 14 47 47 H 1.09001 * 109.87654 * 20.98178 * 17 15 14 48 48 H 0.96999 * 120.00405 * 179.97438 * 22 21 19 49 49 H 1.09008 * 110.28990 * 216.95014 * 27 18 17 50 50 H 1.08996 * 110.53207 * 94.67599 * 27 18 17 51 51 H 0.96693 * 113.99831 * 67.80968 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.1692 2.5329 0.0011 6 6 4.5142 2.9280 1.4383 7 6 5.4534 2.4444 -0.8258 8 6 4.2366 0.0366 0.0016 9 6 3.5986 -1.1912 0.0081 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4955 0.0004 12 8 0.2547 -2.5041 0.1060 13 7 2.1400 -3.6565 -0.1166 14 6 1.4137 -4.9288 -0.1162 15 6 2.4073 -6.0833 -0.2603 16 1 3.0059 -5.9647 -1.1635 17 6 3.3127 -6.1833 0.9855 18 7 3.4946 -7.6115 1.2833 19 6 4.2169 -8.1232 2.3282 20 1 4.0005 -9.1137 2.7004 21 6 5.2272 -7.3688 2.9087 22 7 5.6073 -7.6176 4.1441 23 14 6.0474 -6.0004 1.9369 24 1 5.2527 -4.7531 2.0711 25 1 7.4177 -5.7732 2.4619 26 1 6.1235 -6.3872 0.5052 27 6 2.7693 -8.3995 0.2655 28 6 1.6676 -7.4472 -0.2626 29 1 0.8109 -7.4282 0.4110 30 8 1.2674 -7.8107 -1.5855 31 1 -0.3634 -0.0894 1.0237 32 1 -0.3635 0.9313 -0.4345 33 1 -0.3633 -0.8419 -0.5893 34 1 3.5082 3.2829 -0.4333 35 1 5.1751 2.1779 1.8727 36 1 5.0137 3.8968 1.4387 37 1 3.5993 2.9910 2.0274 38 1 6.1143 1.6943 -0.3915 39 1 5.2075 2.1629 -1.8497 40 1 5.9530 3.4132 -0.8258 41 1 5.3151 0.0911 0.0024 42 1 4.1661 -2.1102 0.0139 43 1 3.1063 -3.6498 -0.2012 44 1 0.7119 -4.9468 -0.9500 45 1 0.8674 -5.0350 0.8211 46 1 4.2783 -5.7216 0.7799 47 1 2.8365 -5.6861 1.8306 48 1 6.3136 -7.0908 4.5497 49 1 2.3211 -9.2830 0.7202 50 1 3.4402 -8.6890 -0.5433 51 1 0.8011 -8.6561 -1.6370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958409063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:13 Heat of formation + Delta-G solvation = -52.113919 kcal Electronic energy + Delta-G solvation = -30922.584829 eV Core-core repulsion = 26821.478220 eV Total energy + Delta-G solvation = -4101.106609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.02701 -40.65473 -39.82845 -36.86499 -36.73840 -36.24765 -34.43934 -33.88952 -32.59786 -31.88977 -29.66821 -28.85190 -27.97157 -27.33477 -25.90275 -24.91544 -23.53087 -22.63112 -21.90635 -21.70902 -20.99434 -19.24632 -18.84283 -18.62860 -18.03468 -17.18024 -16.82823 -16.70754 -16.63589 -16.13029 -15.71629 -15.63644 -15.40551 -15.34611 -15.00799 -14.75872 -14.57312 -14.32639 -14.22083 -14.04729 -13.96036 -13.71983 -13.63112 -13.40992 -13.24521 -13.06683 -12.86841 -12.84333 -12.74442 -12.28694 -12.27131 -12.09693 -12.01440 -11.90280 -11.85805 -11.40139 -11.06516 -10.99943 -10.95391 -10.70541 -10.48228 -10.30128 -9.87448 -9.08391 -8.23663 -5.53669 -0.48032 0.09159 1.23107 1.36137 1.46625 1.70013 1.94428 2.37619 2.65018 2.85992 2.99856 3.11716 3.34947 3.46170 3.53131 3.57973 3.63332 3.66911 3.90978 3.95856 4.08023 4.10212 4.22304 4.26002 4.27852 4.42560 4.46748 4.53807 4.59079 4.62333 4.71010 4.74741 4.77721 4.78704 4.82196 4.90267 4.92305 4.97502 4.99853 5.04142 5.10085 5.17932 5.18265 5.32114 5.34769 5.40306 5.56097 5.65637 6.05993 6.30908 6.68785 6.82503 6.89700 7.01223 7.46416 8.03459 8.96330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003110 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.770308 B = 9002.394037 C =10887.869266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.179 3.821 3 N -0.507 5.507 4 C 0.158 3.842 5 C -0.048 4.048 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.182 4.182 9 C -0.039 4.039 10 C -0.213 4.213 11 C 0.563 3.437 12 O -0.554 6.554 13 N -0.718 5.718 14 C 0.144 3.856 15 C -0.094 4.094 16 H 0.100 0.900 17 C 0.124 3.876 18 N -0.623 5.623 19 C -0.243 4.243 20 H 0.058 0.942 21 C -0.034 4.034 22 N -0.951 5.951 23 Si 0.946 3.054 24 H -0.261 1.261 25 H -0.307 1.307 26 H -0.269 1.269 27 C 0.098 3.902 28 C 0.116 3.884 29 H 0.084 0.916 30 O -0.563 6.563 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.171 0.829 42 H 0.154 0.846 43 H 0.406 0.594 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.021 0.979 47 H 0.033 0.967 48 H 0.264 0.736 49 H 0.056 0.944 50 H 0.036 0.964 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 18.553 -13.385 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 N -0.217 5.217 4 C 0.020 3.980 5 C -0.067 4.067 6 C -0.197 4.197 7 C -0.203 4.203 8 C -0.202 4.202 9 C -0.064 4.064 10 C -0.218 4.218 11 C 0.352 3.648 12 O -0.435 6.435 13 N -0.369 5.369 14 C 0.020 3.980 15 C -0.113 4.113 16 H 0.119 0.881 17 C -0.001 4.001 18 N -0.351 5.351 19 C -0.371 4.371 20 H 0.076 0.924 21 C -0.229 4.229 22 N -0.596 5.596 23 Si 0.775 3.225 24 H -0.187 1.187 25 H -0.236 1.236 26 H -0.194 1.194 27 C -0.027 4.027 28 C 0.056 3.944 29 H 0.102 0.898 30 O -0.371 6.371 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.188 0.812 42 H 0.172 0.828 43 H 0.243 0.757 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.088 19.822 -13.279 24.395 hybrid contribution 1.391 -1.297 0.406 1.944 sum -3.698 18.525 -12.873 22.860 Atomic orbital electron populations 1.20994 0.87314 1.04015 1.03825 1.21648 0.97960 0.86709 0.89596 1.67510 1.10373 1.28542 1.15232 1.22025 0.88919 0.97100 0.89939 1.20214 0.97143 0.90969 0.98393 1.21803 1.01433 1.02764 0.93731 1.21937 0.95364 1.03787 0.99213 1.22240 1.03265 0.91508 1.03148 1.22065 0.92598 1.00209 0.91575 1.20713 0.95180 0.94305 1.11601 1.18154 0.86835 0.83801 0.76051 1.90700 1.14389 1.87409 1.50971 1.45894 1.11409 1.05641 1.73958 1.21284 0.93709 0.80266 1.02739 1.22309 0.96532 0.94186 0.98279 0.88144 1.21776 0.96358 0.86419 0.95521 1.44719 1.59465 1.01438 1.29522 1.18551 1.10905 1.02004 1.05675 0.92414 1.25783 0.98552 1.01786 0.96794 1.69980 1.32296 1.44429 1.12903 0.85883 0.77100 0.80316 0.79219 1.18673 1.23577 1.19435 1.22539 0.93706 0.95210 0.91264 1.22625 0.95267 0.92232 0.84321 0.89824 1.86419 1.79201 1.44781 1.26664 0.90331 0.90308 0.88736 0.89310 0.92157 0.89721 0.93708 0.91163 0.92532 0.90050 0.81207 0.82826 0.75737 0.89596 0.91620 0.96180 0.94898 0.92717 0.92579 0.94623 0.74933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 8.95 71.23 0.64 -1.92 16 2 C 0.18 4.70 6.82 42.89 0.29 5.00 16 3 N -0.51 -12.61 10.17 -171.05 -1.74 -14.35 16 4 C 0.16 3.19 5.79 42.57 0.25 3.44 16 5 C -0.05 -0.68 3.23 -11.54 -0.04 -0.72 16 6 C -0.14 -1.80 9.18 71.98 0.66 -1.14 16 7 C -0.15 -1.42 8.62 71.98 0.62 -0.80 16 8 C -0.18 -3.32 9.16 22.33 0.20 -3.12 16 9 C -0.04 -0.81 9.63 22.73 0.22 -0.59 16 10 C -0.21 -5.47 5.89 -20.00 -0.12 -5.59 16 11 C 0.56 16.01 7.71 86.78 0.67 16.68 16 12 O -0.55 -18.14 13.33 -3.90 -0.05 -18.19 16 13 N -0.72 -18.69 5.35 -465.98 -2.49 -21.18 16 14 C 0.14 3.87 4.99 86.38 0.43 4.30 16 15 C -0.09 -2.76 2.75 -9.60 -0.03 -2.79 16 16 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 17 C 0.12 4.84 4.84 86.73 0.42 5.26 16 18 N -0.62 -28.56 3.14 -691.17 -2.17 -30.73 16 19 C -0.24 -13.64 10.54 84.03 0.89 -12.76 16 20 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 21 C -0.03 -1.93 5.42 84.86 0.46 -1.47 16 22 N -0.95 -58.82 13.97 21.65 0.30 -58.52 16 23 Si 0.95 44.43 24.53 68.60 1.68 46.11 16 24 H -0.26 -11.08 6.82 99.48 0.68 -10.40 16 25 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 26 H -0.27 -12.13 7.03 99.48 0.70 -11.43 16 27 C 0.10 3.49 6.99 86.79 0.61 4.10 16 28 C 0.12 3.24 3.88 31.99 0.12 3.37 16 29 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 30 O -0.56 -12.99 13.47 -148.98 -2.01 -15.00 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.09 2.52 5.72 -2.39 -0.01 2.51 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.58 6.48 -2.39 -0.02 0.57 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.17 2.08 6.29 -2.91 -0.02 2.06 16 42 H 0.15 2.65 6.57 -2.91 -0.02 2.63 16 43 H 0.41 9.35 6.47 -92.71 -0.60 8.75 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 46 H 0.02 0.83 3.50 -2.39 -0.01 0.82 16 47 H 0.03 1.38 7.76 -2.39 -0.02 1.36 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.40 5.56 9.12 -74.06 -0.68 4.88 16 Total: -1.00 -73.64 401.41 -0.53 -74.17 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.35 Total: 26.43 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.30 Total: 11.25 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.10 Total: -124.78 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -2.06 Total: -33.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.68 Total: 46.11 kcal Total: -73.64 -0.53 -74.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.061 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds