Wall clock time and date at job start Wed Apr 1 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31694 * 119.71499 * 2 1 4 4 C 1.31934 * 121.88093 * 180.24618 * 3 2 1 5 5 C 1.50693 * 119.46104 * 179.74508 * 4 3 2 6 6 C 1.53003 * 109.47307 * 95.02149 * 5 4 3 7 7 C 1.53000 * 109.47135 * 215.01999 * 5 4 3 8 8 C 1.38357 * 121.07598 * 359.76493 * 4 3 2 9 9 C 1.38354 * 119.30033 * 359.97438 * 8 4 3 10 10 C 1.39520 * 119.71767 * 179.74943 * 2 1 3 11 11 C 1.47836 * 120.56059 * 0.02584 * 10 2 1 12 12 O 1.21560 * 119.99900 * 354.66612 * 11 10 2 13 13 N 1.34771 * 120.00563 * 174.67202 * 11 10 2 14 14 C 1.46496 * 120.00569 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47183 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.77811 * 56.78399 * 15 14 13 17 17 C 1.54322 * 110.71759 * 293.54036 * 15 14 13 18 18 N 1.47019 * 107.26838 * 219.44243 * 17 15 14 19 19 C 1.36938 * 125.64516 * 178.90664 * 18 17 15 20 20 H 1.08004 * 120.00301 * 331.02731 * 19 18 17 21 21 C 1.38814 * 119.99951 * 151.02645 * 19 18 17 22 22 N 1.31615 * 120.00351 * 163.40459 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 343.40654 * 21 19 18 24 24 H 1.48500 * 109.46920 * 84.76344 * 23 21 19 25 25 H 1.48494 * 109.47037 * 204.76316 * 23 21 19 26 26 H 1.48493 * 109.47037 * 324.76582 * 23 21 19 27 27 C 1.47420 * 108.70411 * 358.94574 * 18 17 15 28 28 C 1.54906 * 104.83448 * 24.12885 * 27 18 17 29 29 H 1.09000 * 111.00546 * 204.91642 * 28 27 18 30 30 O 1.42901 * 111.00488 * 81.06419 * 28 27 18 31 31 H 1.09006 * 109.47159 * 264.56333 * 1 2 3 32 32 H 1.08999 * 109.47313 * 24.56271 * 1 2 3 33 33 H 1.08997 * 109.47017 * 144.56061 * 1 2 3 34 34 H 1.08998 * 109.47637 * 335.02162 * 5 4 3 35 35 H 1.08998 * 109.46761 * 59.99477 * 6 5 4 36 36 H 1.09000 * 109.47417 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47018 * 299.99931 * 6 5 4 38 38 H 1.09002 * 109.47311 * 300.00171 * 7 5 4 39 39 H 1.08996 * 109.46925 * 60.00401 * 7 5 4 40 40 H 1.09000 * 109.47411 * 180.02562 * 7 5 4 41 41 H 1.07995 * 120.34749 * 179.97438 * 8 4 3 42 42 H 1.08003 * 120.85204 * 179.97438 * 9 8 4 43 43 H 0.97001 * 119.99223 * 359.97438 * 13 11 10 44 44 H 1.09001 * 109.47463 * 59.99264 * 14 13 11 45 45 H 1.09005 * 109.46523 * 299.99776 * 14 13 11 46 46 H 1.08996 * 109.88306 * 338.86756 * 17 15 14 47 47 H 1.09004 * 109.87625 * 100.02922 * 17 15 14 48 48 H 0.96995 * 120.00519 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36745 * 142.96502 * 27 18 17 50 50 H 1.08997 * 110.36907 * 265.17714 * 27 18 17 51 51 H 0.96691 * 114.00087 * 67.81077 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0048 5 6 4.1692 2.5328 -0.0104 6 6 4.5204 2.9315 1.4244 7 6 5.4499 2.4424 -0.8425 8 6 4.2366 0.0365 -0.0052 9 6 3.5987 -1.1912 0.0000 10 6 2.1986 -1.2117 0.0053 11 6 1.4657 -2.4956 0.0103 12 8 0.2540 -2.5033 0.1078 13 7 2.1407 -3.6574 -0.0929 14 6 1.4144 -4.9296 -0.0885 15 6 2.4089 -6.0852 -0.2178 16 1 3.1505 -6.0482 0.5802 17 6 3.0932 -6.0644 -1.6008 18 7 3.2117 -7.4592 -2.0501 19 6 3.7459 -7.8711 -3.2419 20 1 3.6951 -7.2274 -4.1076 21 6 4.3526 -9.1159 -3.3372 22 7 4.5710 -9.6529 -4.5189 23 14 4.8592 -10.0292 -1.7884 24 1 3.6978 -10.7883 -1.2592 25 1 5.9622 -10.9708 -2.1073 26 1 5.3201 -9.0544 -0.7674 27 6 2.6596 -8.3409 -1.0056 28 6 1.6688 -7.4489 -0.2167 29 1 1.5337 -7.8193 0.7995 30 8 0.4149 -7.3519 -0.8953 31 1 -0.3634 -0.0974 1.0231 32 1 -0.3634 0.9346 -0.4272 33 1 -0.3633 -0.8372 -0.5959 34 1 3.5065 3.2819 -0.4437 35 1 5.1831 2.1824 1.8577 36 1 5.0206 3.8999 1.4204 37 1 3.6080 2.9959 2.0173 38 1 6.1127 1.6933 -0.4092 39 1 5.1997 2.1584 -1.8647 40 1 5.9500 3.4109 -0.8462 41 1 5.3152 0.0910 -0.0096 42 1 4.1660 -2.1102 -0.0006 43 1 3.1076 -3.6512 -0.1710 44 1 0.7187 -4.9538 -0.9273 45 1 0.8610 -5.0287 0.8454 46 1 2.4856 -5.4979 -2.3065 47 1 4.0833 -5.6162 -1.5177 48 1 4.9946 -10.5229 -4.5855 49 1 2.1348 -9.1824 -1.4579 50 1 3.4548 -8.6980 -0.3513 51 1 -0.0838 -8.1799 -0.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958409064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:17 Heat of formation + Delta-G solvation = -29.417757 kcal Electronic energy + Delta-G solvation = -30607.289944 eV Core-core repulsion = 26507.167514 eV Total energy + Delta-G solvation = -4100.122430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10164 -39.50490 -38.55088 -36.06124 -35.22214 -34.82922 -33.26632 -32.20905 -31.70137 -30.35513 -28.31561 -27.87760 -27.35375 -25.96299 -24.85180 -23.34462 -22.68065 -21.34619 -20.90794 -20.22886 -19.78835 -17.98085 -17.55889 -17.13937 -16.50943 -15.97866 -15.70672 -15.58729 -15.42571 -14.89261 -14.78381 -14.51119 -14.31135 -13.94233 -13.84720 -13.60177 -13.41965 -13.33457 -13.09390 -13.00151 -12.66761 -12.56837 -12.33595 -12.27341 -12.02016 -11.94633 -11.63798 -11.54457 -11.38324 -11.33292 -11.09429 -10.87181 -10.69338 -10.52327 -10.27683 -10.12035 -10.01806 -9.61528 -9.54600 -9.45124 -9.22654 -8.90909 -8.70875 -6.97489 -6.01465 -3.40794 0.42292 0.94188 2.73728 3.05206 3.25136 3.38026 3.41216 3.56737 3.76983 4.24773 4.37869 4.41817 4.45898 4.50349 4.64343 4.69730 4.75786 4.80741 4.84519 5.04036 5.05013 5.12969 5.18110 5.24199 5.30509 5.38485 5.40334 5.43376 5.50259 5.55416 5.58079 5.65825 5.67996 5.74460 5.76373 5.81393 5.83208 5.96391 6.06767 6.09149 6.11615 6.34983 6.39221 6.39872 6.45605 6.56374 6.70356 7.40208 7.69938 7.73615 7.96326 8.12922 8.27737 8.78038 9.61140 10.13262 11.15047 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002368 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.060427 B =11819.566583 C =13082.819501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.194 3.806 3 N -0.490 5.490 4 C 0.163 3.837 5 C -0.050 4.050 6 C -0.141 4.141 7 C -0.149 4.149 8 C -0.186 4.186 9 C -0.035 4.035 10 C -0.195 4.195 11 C 0.562 3.438 12 O -0.529 6.529 13 N -0.721 5.721 14 C 0.141 3.859 15 C -0.110 4.110 16 H 0.089 0.911 17 C 0.142 3.858 18 N -0.601 5.601 19 C -0.242 4.242 20 H 0.087 0.913 21 C 0.026 3.974 22 N -0.909 5.909 23 Si 0.890 3.110 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.275 1.275 27 C 0.084 3.916 28 C 0.099 3.901 29 H 0.063 0.937 30 O -0.551 6.551 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.398 0.602 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.029 0.971 48 H 0.264 0.736 49 H 0.061 0.939 50 H 0.031 0.969 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 20.745 13.889 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.056 3.944 3 N -0.199 5.199 4 C 0.025 3.975 5 C -0.069 4.069 6 C -0.199 4.199 7 C -0.207 4.207 8 C -0.206 4.206 9 C -0.062 4.062 10 C -0.200 4.200 11 C 0.349 3.651 12 O -0.408 6.408 13 N -0.373 5.373 14 C 0.018 3.982 15 C -0.129 4.129 16 H 0.108 0.892 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.370 4.370 20 H 0.105 0.895 21 C -0.173 4.173 22 N -0.553 5.553 23 Si 0.721 3.279 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.201 1.201 27 C -0.042 4.042 28 C 0.038 3.962 29 H 0.081 0.919 30 O -0.356 6.356 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.233 0.767 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.231 21.936 13.682 25.949 hybrid contribution 1.431 -2.209 0.824 2.758 sum -0.800 19.727 14.506 24.499 Atomic orbital electron populations 1.21087 0.87459 1.04089 1.04156 1.21510 0.97537 0.86366 0.89035 1.67473 1.09243 1.28798 1.14431 1.21458 0.89330 0.95486 0.91272 1.20120 0.96594 0.92658 0.97536 1.21801 1.01851 1.01591 0.94637 1.21944 0.96272 1.02525 0.99918 1.21906 1.01834 0.92326 1.04533 1.21792 0.93171 0.98882 0.92311 1.20790 0.94351 0.95129 1.09750 1.17945 0.87071 0.83295 0.76821 1.90726 1.13333 1.87022 1.49715 1.45995 1.10904 1.06118 1.74239 1.21234 0.94118 0.79841 1.02997 1.22562 0.96996 0.93449 0.99908 0.89236 1.21426 0.96836 0.88558 0.91495 1.44534 1.70318 1.00038 1.17879 1.18606 1.30445 1.02531 0.85408 0.89509 1.25270 0.98161 0.97597 0.96296 1.69782 1.45693 1.17355 1.22427 0.86817 0.78015 0.79039 0.84060 1.21323 1.22902 1.20101 1.22674 0.94629 0.94865 0.92009 1.22825 0.84332 0.95087 0.93931 0.91941 1.86460 1.31478 1.37863 1.79788 0.89996 0.91346 0.87581 0.88997 0.92393 0.91678 0.92234 0.91963 0.92138 0.91638 0.84000 0.84262 0.76654 0.89682 0.91453 0.94396 0.95318 0.92589 0.92089 0.95184 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.93 36.00 0.32 -0.98 16 2 C 0.19 2.43 6.82 -82.17 -0.56 1.87 16 3 N -0.49 -5.89 10.17 -5.42 -0.06 -5.95 16 4 C 0.16 1.61 5.79 -82.51 -0.48 1.13 16 5 C -0.05 -0.36 3.23 -91.77 -0.30 -0.66 16 6 C -0.14 -0.88 9.18 37.16 0.34 -0.53 16 7 C -0.15 -0.85 8.61 37.16 0.32 -0.53 16 8 C -0.19 -1.64 9.16 -39.49 -0.36 -2.00 16 9 C -0.04 -0.34 9.64 -38.87 -0.37 -0.72 16 10 C -0.20 -2.35 5.89 -104.82 -0.62 -2.97 16 11 C 0.56 7.64 7.71 -12.34 -0.10 7.54 16 12 O -0.53 -8.51 13.34 5.31 0.07 -8.44 16 13 N -0.72 -8.92 5.35 -61.25 -0.33 -9.25 16 14 C 0.14 1.97 4.59 -4.04 -0.02 1.96 16 15 C -0.11 -1.64 2.95 -88.78 -0.26 -1.90 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.14 2.70 6.52 -3.07 -0.02 2.68 16 18 N -0.60 -14.14 3.08 -170.08 -0.52 -14.66 16 19 C -0.24 -6.81 10.56 -15.06 -0.16 -6.97 16 20 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 21 C 0.03 0.75 5.47 -17.43 -0.10 0.65 16 22 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 23 Si 0.89 22.03 24.38 -169.99 -4.14 17.89 16 24 H -0.29 -6.78 6.86 56.52 0.39 -6.39 16 25 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.28 -6.62 6.67 56.52 0.38 -6.24 16 27 C 0.08 1.71 4.53 -2.53 -0.01 1.70 16 28 C 0.10 1.56 4.17 -24.58 -0.10 1.45 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 O -0.55 -8.67 12.22 -35.23 -0.43 -9.10 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 1.40 5.76 -51.93 -0.30 1.10 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.31 6.48 -51.93 -0.34 -0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.14 0.89 6.29 -52.49 -0.33 0.56 16 42 H 0.14 1.01 6.55 -52.48 -0.34 0.66 16 43 H 0.40 4.09 6.46 -40.82 -0.26 3.83 16 44 H 0.08 1.41 7.44 -51.93 -0.39 1.03 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 49 H 0.06 1.31 7.47 -51.93 -0.39 0.93 16 50 H 0.03 0.63 5.24 -51.93 -0.27 0.36 16 51 H 0.38 4.48 9.12 45.56 0.42 4.90 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -34.58 399.52 -8.36 -42.94 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.28 Total: 5.83 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.47 Total: 1.71 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.13 Total: -56.86 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.36 Total: -17.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.58 -8.36 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.521 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds