Wall clock time and date at job start Wed Apr 1 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31694 * 119.71499 * 2 1 4 4 C 1.31934 * 121.88093 * 180.24618 * 3 2 1 5 5 C 1.50693 * 119.46104 * 179.74508 * 4 3 2 6 6 C 1.53003 * 109.47307 * 95.02149 * 5 4 3 7 7 C 1.53000 * 109.47135 * 215.01999 * 5 4 3 8 8 C 1.38357 * 121.07598 * 359.76493 * 4 3 2 9 9 C 1.38354 * 119.30033 * 359.97438 * 8 4 3 10 10 C 1.39520 * 119.71767 * 179.74943 * 2 1 3 11 11 C 1.47836 * 120.56059 * 0.02584 * 10 2 1 12 12 O 1.21560 * 119.99900 * 354.66612 * 11 10 2 13 13 N 1.34771 * 120.00563 * 174.67202 * 11 10 2 14 14 C 1.46496 * 120.00569 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47183 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.77811 * 56.78399 * 15 14 13 17 17 C 1.54322 * 110.71759 * 293.54036 * 15 14 13 18 18 N 1.47019 * 107.26838 * 219.44243 * 17 15 14 19 19 C 1.36938 * 125.64516 * 178.90664 * 18 17 15 20 20 H 1.08004 * 120.00301 * 331.02731 * 19 18 17 21 21 C 1.38814 * 119.99951 * 151.02645 * 19 18 17 22 22 N 1.31615 * 120.00351 * 163.40459 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 343.40654 * 21 19 18 24 24 H 1.48500 * 109.46920 * 84.76344 * 23 21 19 25 25 H 1.48494 * 109.47037 * 204.76316 * 23 21 19 26 26 H 1.48493 * 109.47037 * 324.76582 * 23 21 19 27 27 C 1.47420 * 108.70411 * 358.94574 * 18 17 15 28 28 C 1.54906 * 104.83448 * 24.12885 * 27 18 17 29 29 H 1.09000 * 111.00546 * 204.91642 * 28 27 18 30 30 O 1.42901 * 111.00488 * 81.06419 * 28 27 18 31 31 H 1.09006 * 109.47159 * 264.56333 * 1 2 3 32 32 H 1.08999 * 109.47313 * 24.56271 * 1 2 3 33 33 H 1.08997 * 109.47017 * 144.56061 * 1 2 3 34 34 H 1.08998 * 109.47637 * 335.02162 * 5 4 3 35 35 H 1.08998 * 109.46761 * 59.99477 * 6 5 4 36 36 H 1.09000 * 109.47417 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47018 * 299.99931 * 6 5 4 38 38 H 1.09002 * 109.47311 * 300.00171 * 7 5 4 39 39 H 1.08996 * 109.46925 * 60.00401 * 7 5 4 40 40 H 1.09000 * 109.47411 * 180.02562 * 7 5 4 41 41 H 1.07995 * 120.34749 * 179.97438 * 8 4 3 42 42 H 1.08003 * 120.85204 * 179.97438 * 9 8 4 43 43 H 0.97001 * 119.99223 * 359.97438 * 13 11 10 44 44 H 1.09001 * 109.47463 * 59.99264 * 14 13 11 45 45 H 1.09005 * 109.46523 * 299.99776 * 14 13 11 46 46 H 1.08996 * 109.88306 * 338.86756 * 17 15 14 47 47 H 1.09004 * 109.87625 * 100.02922 * 17 15 14 48 48 H 0.96995 * 120.00519 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36745 * 142.96502 * 27 18 17 50 50 H 1.08997 * 110.36907 * 265.17714 * 27 18 17 51 51 H 0.96691 * 114.00087 * 67.81077 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0048 5 6 4.1692 2.5328 -0.0104 6 6 4.5204 2.9315 1.4244 7 6 5.4499 2.4424 -0.8425 8 6 4.2366 0.0365 -0.0052 9 6 3.5987 -1.1912 0.0000 10 6 2.1986 -1.2117 0.0053 11 6 1.4657 -2.4956 0.0103 12 8 0.2540 -2.5033 0.1078 13 7 2.1407 -3.6574 -0.0929 14 6 1.4144 -4.9296 -0.0885 15 6 2.4089 -6.0852 -0.2178 16 1 3.1505 -6.0482 0.5802 17 6 3.0932 -6.0644 -1.6008 18 7 3.2117 -7.4592 -2.0501 19 6 3.7459 -7.8711 -3.2419 20 1 3.6951 -7.2274 -4.1076 21 6 4.3526 -9.1159 -3.3372 22 7 4.5710 -9.6529 -4.5189 23 14 4.8592 -10.0292 -1.7884 24 1 3.6978 -10.7883 -1.2592 25 1 5.9622 -10.9708 -2.1073 26 1 5.3201 -9.0544 -0.7674 27 6 2.6596 -8.3409 -1.0056 28 6 1.6688 -7.4489 -0.2167 29 1 1.5337 -7.8193 0.7995 30 8 0.4149 -7.3519 -0.8953 31 1 -0.3634 -0.0974 1.0231 32 1 -0.3634 0.9346 -0.4272 33 1 -0.3633 -0.8372 -0.5959 34 1 3.5065 3.2819 -0.4437 35 1 5.1831 2.1824 1.8577 36 1 5.0206 3.8999 1.4204 37 1 3.6080 2.9959 2.0173 38 1 6.1127 1.6933 -0.4092 39 1 5.1997 2.1584 -1.8647 40 1 5.9500 3.4109 -0.8462 41 1 5.3152 0.0910 -0.0096 42 1 4.1660 -2.1102 -0.0006 43 1 3.1076 -3.6512 -0.1710 44 1 0.7187 -4.9538 -0.9273 45 1 0.8610 -5.0287 0.8454 46 1 2.4856 -5.4979 -2.3065 47 1 4.0833 -5.6162 -1.5177 48 1 4.9946 -10.5229 -4.5855 49 1 2.1348 -9.1824 -1.4579 50 1 3.4548 -8.6980 -0.3513 51 1 -0.0838 -8.1799 -0.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958409064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:16 Heat of formation + Delta-G solvation = -55.897205 kcal Electronic energy + Delta-G solvation = -30608.438179 eV Core-core repulsion = 26507.167514 eV Total energy + Delta-G solvation = -4101.270665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96255 -40.60406 -39.81512 -36.74250 -36.45375 -36.21810 -34.40625 -33.81891 -32.54854 -31.82326 -29.71363 -28.82116 -27.94417 -27.39262 -25.84589 -24.73146 -23.46069 -22.79358 -21.97556 -21.25831 -20.92438 -19.24951 -18.93480 -18.12038 -17.88378 -17.36238 -16.76838 -16.66094 -16.48791 -16.00268 -15.75734 -15.71606 -15.49225 -15.12805 -14.92832 -14.79063 -14.46813 -14.26427 -14.20081 -14.00536 -13.96192 -13.67281 -13.48535 -13.21175 -13.14512 -13.03584 -12.82707 -12.79558 -12.30083 -12.25040 -12.21018 -12.15520 -12.06523 -11.86465 -11.82352 -11.51006 -10.99349 -10.93431 -10.90006 -10.72772 -10.42053 -10.21455 -9.80742 -8.91178 -8.20723 -5.57131 -0.41518 0.16328 1.29668 1.38352 1.49026 1.77206 2.04388 2.39824 2.71589 3.03193 3.04298 3.17168 3.36549 3.55124 3.61599 3.67178 3.72779 3.79118 3.90144 3.97906 4.12891 4.15069 4.26414 4.33676 4.37960 4.52569 4.57030 4.62735 4.66531 4.69217 4.73133 4.79100 4.81471 4.86107 4.89733 4.94716 4.99189 5.01110 5.02735 5.03759 5.17329 5.22092 5.30768 5.36411 5.41778 5.44696 5.61345 5.73947 6.09619 6.43385 6.75192 6.88567 6.93450 7.12622 7.50182 8.10119 9.00058 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002368 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.060427 B =11819.566583 C =13082.819501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.174 3.826 3 N -0.510 5.510 4 C 0.155 3.845 5 C -0.049 4.049 6 C -0.137 4.137 7 C -0.146 4.146 8 C -0.181 4.181 9 C -0.032 4.032 10 C -0.211 4.211 11 C 0.561 3.439 12 O -0.561 6.561 13 N -0.712 5.712 14 C 0.154 3.846 15 C -0.095 4.095 16 H 0.125 0.875 17 C 0.138 3.862 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.042 0.958 21 C -0.035 4.035 22 N -0.961 5.961 23 Si 0.960 3.040 24 H -0.268 1.268 25 H -0.309 1.309 26 H -0.257 1.257 27 C 0.074 3.926 28 C 0.108 3.892 29 H 0.110 0.890 30 O -0.567 6.567 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.173 0.827 42 H 0.166 0.834 43 H 0.410 0.590 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.016 0.984 47 H 0.040 0.960 48 H 0.264 0.736 49 H 0.043 0.957 50 H 0.039 0.961 51 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 21.308 17.211 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.036 3.964 3 N -0.220 5.220 4 C 0.017 3.983 5 C -0.069 4.069 6 C -0.195 4.195 7 C -0.203 4.203 8 C -0.200 4.200 9 C -0.058 4.058 10 C -0.217 4.217 11 C 0.349 3.651 12 O -0.442 6.442 13 N -0.364 5.364 14 C 0.031 3.969 15 C -0.114 4.114 16 H 0.143 0.857 17 C 0.014 3.986 18 N -0.348 5.348 19 C -0.369 4.369 20 H 0.060 0.940 21 C -0.230 4.230 22 N -0.607 5.607 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.238 1.238 26 H -0.181 1.181 27 C -0.051 4.051 28 C 0.048 3.952 29 H 0.127 0.873 30 O -0.375 6.375 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.191 0.809 42 H 0.183 0.817 43 H 0.248 0.752 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.035 0.965 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.056 0.944 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.681 22.519 17.039 28.247 hybrid contribution 0.909 -2.253 -0.320 2.450 sum 0.228 20.266 16.719 26.274 Atomic orbital electron populations 1.20964 0.87780 1.03572 1.03821 1.21605 0.97779 0.87000 0.89982 1.67483 1.10568 1.28656 1.15333 1.22017 0.88872 0.97232 0.90202 1.20206 0.97015 0.91067 0.98575 1.21782 1.01441 1.02762 0.93499 1.21939 0.95515 1.03815 0.99062 1.22257 1.03293 0.91468 1.03001 1.22113 0.92182 1.00420 0.91090 1.20717 0.95484 0.94007 1.11457 1.18202 0.86793 0.83987 0.76138 1.90714 1.14746 1.87496 1.51196 1.45858 1.11438 1.05344 1.73789 1.20974 0.93538 0.80176 1.02262 1.22551 0.97349 0.93467 0.98022 0.85717 1.21539 0.97562 0.85984 0.93564 1.44631 1.70364 1.02552 1.17271 1.18455 1.30178 1.01908 0.86315 0.94018 1.25996 0.98600 0.98787 0.99609 1.69942 1.47567 1.18119 1.25095 0.85699 0.77695 0.77802 0.80051 1.19350 1.23762 1.18119 1.22884 0.95796 0.94936 0.91509 1.22891 0.83073 0.94158 0.95076 0.87267 1.86451 1.31576 1.39320 1.80161 0.90028 0.90743 0.89314 0.89877 0.91652 0.89985 0.93690 0.90722 0.92987 0.90202 0.80939 0.81650 0.75249 0.92757 0.90270 0.96549 0.94181 0.92736 0.93868 0.94390 0.75791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.55 8.93 71.24 0.64 -1.92 16 2 C 0.17 4.39 6.82 42.89 0.29 4.68 16 3 N -0.51 -12.13 10.17 -171.06 -1.74 -13.87 16 4 C 0.15 2.84 5.79 42.57 0.25 3.08 16 5 C -0.05 -0.63 3.23 -11.54 -0.04 -0.67 16 6 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 7 C -0.15 -1.27 8.61 71.98 0.62 -0.65 16 8 C -0.18 -2.71 9.16 22.33 0.20 -2.50 16 9 C -0.03 -0.54 9.64 22.73 0.22 -0.33 16 10 C -0.21 -4.92 5.89 -20.00 -0.12 -5.04 16 11 C 0.56 14.88 7.71 86.78 0.67 15.54 16 12 O -0.56 -18.21 13.34 -3.90 -0.05 -18.27 16 13 N -0.71 -16.25 5.35 -465.98 -2.49 -18.75 16 14 C 0.15 3.98 4.59 86.38 0.40 4.37 16 15 C -0.09 -2.50 2.95 -9.60 -0.03 -2.53 16 16 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 17 C 0.14 5.05 6.52 86.73 0.57 5.62 16 18 N -0.62 -28.82 3.08 -692.01 -2.13 -30.95 16 19 C -0.24 -13.83 10.56 84.03 0.89 -12.94 16 20 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 21 C -0.04 -2.05 5.47 84.86 0.46 -1.59 16 22 N -0.96 -60.68 13.97 21.65 0.30 -60.38 16 23 Si 0.96 45.08 24.38 68.60 1.67 46.75 16 24 H -0.27 -11.67 6.86 99.48 0.68 -10.98 16 25 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.26 -11.16 6.67 99.48 0.66 -10.49 16 27 C 0.07 2.81 4.53 86.85 0.39 3.20 16 28 C 0.11 3.01 4.17 31.99 0.13 3.14 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 O -0.57 -16.67 12.22 -148.98 -1.82 -18.49 16 31 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.48 5.76 -2.39 -0.01 2.46 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.47 6.48 -2.39 -0.02 0.45 16 39 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.17 1.46 6.29 -2.91 -0.02 1.44 16 42 H 0.17 1.80 6.55 -2.91 -0.02 1.78 16 43 H 0.41 7.24 6.46 -92.71 -0.60 6.65 16 44 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 45 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.02 0.67 7.76 -2.39 -0.02 0.65 16 47 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.04 1.78 7.47 -2.38 -0.02 1.77 16 50 H 0.04 1.43 5.24 -2.39 -0.01 1.41 16 51 H 0.39 8.51 9.12 -74.06 -0.68 7.83 16 Total: -1.00 -79.26 399.52 -0.44 -79.69 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.38 Total: 23.52 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.21 Total: 10.73 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -6.06 Total: -123.94 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.87 Total: -36.76 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -79.26 -0.44 -79.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.797 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds