Wall clock time and date at job start Wed Apr 1 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38354 * 119.45843 * 2 1 4 4 C 1.38355 * 119.30615 * 179.69961 * 3 2 1 5 5 C 1.40022 * 118.28590 * 0.27941 * 4 3 2 6 6 C 1.47845 * 120.56025 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99800 * 137.81166 * 6 5 4 8 8 N 1.34771 * 120.00097 * 317.82156 * 6 5 4 9 9 C 1.46496 * 120.00239 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47379 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.51161 * 59.99609 * 10 9 8 12 12 C 1.53295 * 109.51471 * 180.09887 * 10 9 8 13 13 N 1.47148 * 108.38527 * 172.22148 * 12 10 9 14 14 C 1.36943 * 120.97742 * 129.48630 * 13 12 10 15 15 H 1.07997 * 120.00486 * 329.84148 * 14 13 12 16 16 C 1.38813 * 119.99949 * 149.83962 * 14 13 12 17 17 N 1.31619 * 119.99977 * 338.93785 * 16 14 13 18 18 Si 1.86801 * 120.00140 * 158.93509 * 16 14 13 19 19 H 1.48498 * 109.46808 * 84.99547 * 18 16 14 20 20 H 1.48495 * 109.47154 * 204.99535 * 18 16 14 21 21 H 1.48498 * 109.47258 * 324.99650 * 18 16 14 22 22 C 1.47145 * 118.04232 * 309.46866 * 13 12 10 23 23 C 1.53293 * 108.38195 * 50.53015 * 22 13 12 24 24 O 1.42956 * 109.26743 * 307.72297 * 23 22 13 25 25 C 1.39525 * 118.88467 * 359.97438 * 5 4 3 26 26 C 1.50702 * 119.71678 * 179.97438 * 25 5 4 27 27 C 1.53002 * 109.46862 * 111.94358 * 26 25 5 28 28 C 1.53006 * 109.46659 * 231.94171 * 26 25 5 29 29 N 1.31694 * 120.56199 * 359.97438 * 25 5 4 30 30 H 1.09001 * 109.47179 * 90.00057 * 1 2 3 31 31 H 1.08999 * 109.46876 * 210.00239 * 1 2 3 32 32 H 1.08996 * 109.47217 * 330.00167 * 1 2 3 33 33 H 1.08009 * 120.34847 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.85645 * 180.29694 * 4 3 2 35 35 H 0.97003 * 120.00188 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47027 * 299.99350 * 9 8 6 37 37 H 1.09004 * 109.47383 * 59.99268 * 9 8 6 38 38 H 1.09002 * 109.68465 * 291.94928 * 12 10 9 39 39 H 1.09010 * 109.68077 * 52.50093 * 12 10 9 40 40 H 0.97005 * 120.00552 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.68822 * 170.25710 * 22 13 12 42 42 H 1.09001 * 109.68069 * 290.77482 * 22 13 12 43 43 H 1.09000 * 109.51519 * 67.62574 * 23 22 13 44 44 H 1.09005 * 109.51141 * 187.72709 * 23 22 13 45 45 H 1.08998 * 109.46924 * 351.93851 * 26 25 5 46 46 H 1.09004 * 109.46485 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.47072 * 299.99342 * 27 26 25 48 48 H 1.09000 * 109.47248 * 60.00041 * 27 26 25 49 49 H 1.08995 * 109.47201 * 60.00185 * 28 26 25 50 50 H 1.08993 * 109.46870 * 180.02562 * 28 26 25 51 51 H 1.09000 * 109.47037 * 300.00281 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0063 5 6 4.2312 -0.0338 0.0065 6 6 5.7083 -0.0964 0.0137 7 8 6.2789 -0.9032 0.7215 8 7 6.4221 0.7412 -0.7643 9 6 7.8857 0.6796 -0.7568 10 6 8.4453 1.7279 -1.7205 11 1 8.1221 2.7204 -1.4065 12 6 9.9769 1.6626 -1.7152 13 7 10.4826 2.5430 -2.7803 14 6 11.4531 3.4744 -2.5233 15 1 11.5244 3.9240 -1.5440 16 6 12.3453 3.8406 -3.5217 17 7 12.5474 3.0428 -4.5488 18 14 13.2592 5.4658 -3.4075 19 1 14.4789 5.2906 -2.5788 20 1 13.6463 5.9128 -4.7697 21 1 12.3790 6.4859 -2.7833 22 6 9.9152 2.3929 -4.1296 23 6 8.3866 2.4227 -4.0172 24 8 7.9666 1.4656 -3.0419 25 6 3.4717 -1.2042 0.0009 26 6 4.1629 -2.5433 0.0004 27 6 3.9127 -3.2468 1.3359 28 6 3.6109 -3.4017 -1.1396 29 7 2.1559 -1.1486 -0.0040 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6442 2.1382 -0.0004 34 1 4.1273 2.1267 0.0113 35 1 5.9667 1.3849 -1.3293 36 1 8.2526 0.8787 0.2501 37 1 8.2093 -0.3125 -1.0718 38 1 10.3554 1.9991 -0.7500 39 1 10.3013 0.6385 -1.9006 40 1 13.1711 3.2984 -5.2464 41 1 10.2527 3.2131 -4.7632 42 1 10.2338 1.4428 -4.5582 43 1 8.0632 3.4180 -3.7124 44 1 7.9457 2.1765 -4.9833 45 1 5.2342 -2.3991 -0.1393 46 1 4.4123 -4.2156 1.3353 47 1 4.3060 -2.6353 2.1479 48 1 2.8414 -3.3910 1.4755 49 1 3.7891 -2.9005 -2.0909 50 1 4.1105 -4.3704 -1.1397 51 1 2.5395 -3.5458 -0.9999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035460556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:37 Heat of formation + Delta-G solvation = -36.186998 kcal Electronic energy + Delta-G solvation = -30776.638709 eV Core-core repulsion = 26676.222743 eV Total energy + Delta-G solvation = -4100.415966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.10815 -39.34578 -38.42698 -35.92183 -34.87957 -34.31813 -33.37330 -31.65046 -31.55263 -30.74659 -28.51537 -27.44742 -27.18523 -25.61679 -24.20925 -23.30282 -23.06918 -21.88035 -20.75666 -20.57786 -19.73209 -17.91914 -17.03187 -16.88271 -16.04240 -16.02632 -15.89383 -15.15089 -14.97444 -14.83131 -14.65522 -14.43085 -14.24025 -14.07917 -13.89260 -13.48581 -13.43522 -13.24033 -13.09658 -12.85267 -12.79815 -12.59095 -12.51209 -12.35719 -12.13685 -11.61516 -11.49219 -11.23850 -11.22762 -10.95155 -10.86177 -10.78638 -10.47373 -10.38146 -10.16364 -10.10733 -10.06818 -9.74016 -9.56431 -9.17389 -9.13027 -8.95926 -8.57168 -6.77701 -5.91375 -3.35655 0.50257 0.92804 2.61570 3.07269 3.30373 3.37808 3.39831 3.46434 3.84448 4.14744 4.29828 4.36268 4.38939 4.56226 4.71495 4.96740 5.03176 5.06307 5.10009 5.11603 5.21721 5.23303 5.25647 5.40472 5.45243 5.52217 5.59163 5.60428 5.66957 5.70224 5.73803 5.78583 5.78927 5.90009 5.95754 5.96698 6.07261 6.16907 6.19161 6.22405 6.30266 6.40617 6.41627 6.44644 6.70962 6.96613 7.37132 7.43075 7.68421 7.68735 7.76063 8.11342 8.29021 9.04520 9.67956 10.27554 11.16727 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002148 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.954288 B =13029.692462 C =13530.369089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.147 3.853 3 C -0.184 4.184 4 C -0.039 4.039 5 C -0.186 4.186 6 C 0.562 3.438 7 O -0.530 6.530 8 N -0.711 5.711 9 C 0.130 3.870 10 C 0.065 3.935 11 H 0.059 0.941 12 C 0.122 3.878 13 N -0.591 5.591 14 C -0.264 4.264 15 H 0.066 0.934 16 C 0.009 3.991 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.142 3.858 23 C 0.041 3.959 24 O -0.389 6.389 25 C 0.197 3.803 26 C -0.059 4.059 27 C -0.131 4.131 28 C -0.139 4.139 29 N -0.481 5.481 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.404 0.596 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 -5.506 7.615 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.009 3.991 3 C -0.204 4.204 4 C -0.065 4.065 5 C -0.192 4.192 6 C 0.347 3.653 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.006 3.994 10 C 0.005 3.995 11 H 0.077 0.923 12 C -0.006 4.006 13 N -0.315 5.315 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.537 5.537 18 Si 0.730 3.270 19 H -0.211 1.211 20 H -0.214 1.214 21 H -0.204 1.204 22 C 0.016 3.984 23 C -0.037 4.037 24 O -0.308 6.308 25 C 0.058 3.942 26 C -0.078 4.078 27 C -0.189 4.189 28 C -0.197 4.197 29 N -0.190 5.190 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.329 -6.973 7.913 25.602 hybrid contribution 1.071 2.388 -0.391 2.646 sum -22.258 -4.584 7.521 23.938 Atomic orbital electron populations 1.20764 0.88540 1.03665 1.03343 1.21493 0.97202 0.88250 0.92170 1.21876 0.94467 0.99519 1.04543 1.21739 0.94672 0.97188 0.92944 1.20807 0.94618 0.95036 1.08704 1.18014 0.86125 0.80938 0.80189 1.90773 1.71668 1.37087 1.41228 1.45898 1.07768 1.38123 1.44306 1.21495 0.78275 1.00509 0.99111 1.22825 0.96968 0.96583 0.83162 0.92343 1.21457 0.90016 0.95006 0.94072 1.44015 1.43333 1.39575 1.04584 1.19079 1.07213 1.14225 0.98807 0.91586 1.25107 0.96654 0.98739 0.98620 1.70091 1.36609 1.34517 1.12462 0.86359 0.79724 0.83962 0.76987 1.21095 1.21447 1.20441 1.21328 0.88016 1.01159 0.87870 1.23289 0.98524 0.91113 0.90758 1.87784 1.73853 1.51949 1.17251 1.21313 0.88589 0.94556 0.89761 1.20414 1.00755 0.89536 0.97133 1.21663 1.01640 0.99968 0.95592 1.21779 1.01762 0.99111 0.97054 1.67351 1.08897 1.28893 1.13886 0.90066 0.90260 0.90506 0.84249 0.84157 0.76143 0.89888 0.90411 0.91697 0.95186 0.93440 0.90003 0.95112 0.94042 0.89998 0.87728 0.92080 0.92491 0.92393 0.93060 0.92142 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.00 0.37 -0.26 16 2 C 0.15 1.36 6.78 -82.51 -0.56 0.80 16 3 C -0.18 -1.52 9.72 -39.50 -0.38 -1.90 16 4 C -0.04 -0.37 9.54 -38.87 -0.37 -0.74 16 5 C -0.19 -2.25 5.75 -104.82 -0.60 -2.85 16 6 C 0.56 7.73 6.78 -12.33 -0.08 7.65 16 7 O -0.53 -8.71 14.72 5.32 0.08 -8.63 16 8 N -0.71 -9.15 5.39 -61.25 -0.33 -9.48 16 9 C 0.13 1.87 5.37 -4.04 -0.02 1.85 16 10 C 0.06 1.08 2.86 -26.58 -0.08 1.00 16 11 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 12 C 0.12 2.47 6.02 -3.54 -0.02 2.45 16 13 N -0.59 -14.45 3.02 -171.83 -0.52 -14.97 16 14 C -0.26 -7.06 9.57 -15.06 -0.14 -7.20 16 15 H 0.07 1.73 7.91 -52.49 -0.42 1.31 16 16 C 0.01 0.24 4.80 -17.43 -0.08 0.16 16 17 N -0.89 -25.50 11.72 55.49 0.65 -24.85 16 18 Si 0.90 21.03 29.60 -169.99 -5.03 16.00 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.14 3.28 5.46 -3.54 -0.02 3.26 16 23 C 0.04 0.75 6.98 37.31 0.26 1.01 16 24 O -0.39 -6.97 10.14 -35.23 -0.36 -7.33 16 25 C 0.20 2.43 5.51 -82.17 -0.45 1.97 16 26 C -0.06 -0.71 2.71 -91.77 -0.25 -0.96 16 27 C -0.13 -1.43 9.16 37.16 0.34 -1.09 16 28 C -0.14 -1.46 9.02 37.16 0.34 -1.12 16 29 N -0.48 -5.51 9.67 -5.42 -0.05 -5.56 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 35 H 0.40 4.61 8.01 -40.82 -0.33 4.28 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 39 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.08 2.05 6.59 -51.93 -0.34 1.71 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.10 1.45 5.27 -51.93 -0.27 1.17 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -31.77 411.92 -9.62 -41.39 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.50 Total: 3.20 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.77 Total: 4.02 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.25 Total: -54.86 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.28 Total: -15.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.77 -9.62 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035460556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.207 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds