Wall clock time and date at job start Wed Apr 1 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38354 * 119.45843 * 2 1 4 4 C 1.38355 * 119.30615 * 179.69961 * 3 2 1 5 5 C 1.40022 * 118.28590 * 0.27941 * 4 3 2 6 6 C 1.47845 * 120.56025 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99800 * 137.81166 * 6 5 4 8 8 N 1.34771 * 120.00097 * 317.82156 * 6 5 4 9 9 C 1.46496 * 120.00239 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47379 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.51161 * 59.99609 * 10 9 8 12 12 C 1.53295 * 109.51471 * 180.09887 * 10 9 8 13 13 N 1.47148 * 108.38527 * 172.22148 * 12 10 9 14 14 C 1.36943 * 120.97742 * 129.48630 * 13 12 10 15 15 H 1.07997 * 120.00486 * 329.84148 * 14 13 12 16 16 C 1.38813 * 119.99949 * 149.83962 * 14 13 12 17 17 N 1.31619 * 119.99977 * 338.93785 * 16 14 13 18 18 Si 1.86801 * 120.00140 * 158.93509 * 16 14 13 19 19 H 1.48498 * 109.46808 * 84.99547 * 18 16 14 20 20 H 1.48495 * 109.47154 * 204.99535 * 18 16 14 21 21 H 1.48498 * 109.47258 * 324.99650 * 18 16 14 22 22 C 1.47145 * 118.04232 * 309.46866 * 13 12 10 23 23 C 1.53293 * 108.38195 * 50.53015 * 22 13 12 24 24 O 1.42956 * 109.26743 * 307.72297 * 23 22 13 25 25 C 1.39525 * 118.88467 * 359.97438 * 5 4 3 26 26 C 1.50702 * 119.71678 * 179.97438 * 25 5 4 27 27 C 1.53002 * 109.46862 * 111.94358 * 26 25 5 28 28 C 1.53006 * 109.46659 * 231.94171 * 26 25 5 29 29 N 1.31694 * 120.56199 * 359.97438 * 25 5 4 30 30 H 1.09001 * 109.47179 * 90.00057 * 1 2 3 31 31 H 1.08999 * 109.46876 * 210.00239 * 1 2 3 32 32 H 1.08996 * 109.47217 * 330.00167 * 1 2 3 33 33 H 1.08009 * 120.34847 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.85645 * 180.29694 * 4 3 2 35 35 H 0.97003 * 120.00188 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47027 * 299.99350 * 9 8 6 37 37 H 1.09004 * 109.47383 * 59.99268 * 9 8 6 38 38 H 1.09002 * 109.68465 * 291.94928 * 12 10 9 39 39 H 1.09010 * 109.68077 * 52.50093 * 12 10 9 40 40 H 0.97005 * 120.00552 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.68822 * 170.25710 * 22 13 12 42 42 H 1.09001 * 109.68069 * 290.77482 * 22 13 12 43 43 H 1.09000 * 109.51519 * 67.62574 * 23 22 13 44 44 H 1.09005 * 109.51141 * 187.72709 * 23 22 13 45 45 H 1.08998 * 109.46924 * 351.93851 * 26 25 5 46 46 H 1.09004 * 109.46485 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.47072 * 299.99342 * 27 26 25 48 48 H 1.09000 * 109.47248 * 60.00041 * 27 26 25 49 49 H 1.08995 * 109.47201 * 60.00185 * 28 26 25 50 50 H 1.08993 * 109.46870 * 180.02562 * 28 26 25 51 51 H 1.09000 * 109.47037 * 300.00281 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0063 5 6 4.2312 -0.0338 0.0065 6 6 5.7083 -0.0964 0.0137 7 8 6.2789 -0.9032 0.7215 8 7 6.4221 0.7412 -0.7643 9 6 7.8857 0.6796 -0.7568 10 6 8.4453 1.7279 -1.7205 11 1 8.1221 2.7204 -1.4065 12 6 9.9769 1.6626 -1.7152 13 7 10.4826 2.5430 -2.7803 14 6 11.4531 3.4744 -2.5233 15 1 11.5244 3.9240 -1.5440 16 6 12.3453 3.8406 -3.5217 17 7 12.5474 3.0428 -4.5488 18 14 13.2592 5.4658 -3.4075 19 1 14.4789 5.2906 -2.5788 20 1 13.6463 5.9128 -4.7697 21 1 12.3790 6.4859 -2.7833 22 6 9.9152 2.3929 -4.1296 23 6 8.3866 2.4227 -4.0172 24 8 7.9666 1.4656 -3.0419 25 6 3.4717 -1.2042 0.0009 26 6 4.1629 -2.5433 0.0004 27 6 3.9127 -3.2468 1.3359 28 6 3.6109 -3.4017 -1.1396 29 7 2.1559 -1.1486 -0.0040 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6442 2.1382 -0.0004 34 1 4.1273 2.1267 0.0113 35 1 5.9667 1.3849 -1.3293 36 1 8.2526 0.8787 0.2501 37 1 8.2093 -0.3125 -1.0718 38 1 10.3554 1.9991 -0.7500 39 1 10.3013 0.6385 -1.9006 40 1 13.1711 3.2984 -5.2464 41 1 10.2527 3.2131 -4.7632 42 1 10.2338 1.4428 -4.5582 43 1 8.0632 3.4180 -3.7124 44 1 7.9457 2.1765 -4.9833 45 1 5.2342 -2.3991 -0.1393 46 1 4.4123 -4.2156 1.3353 47 1 4.3060 -2.6353 2.1479 48 1 2.8414 -3.3910 1.4755 49 1 3.7891 -2.9005 -2.0909 50 1 4.1105 -4.3704 -1.1397 51 1 2.5395 -3.5458 -0.9999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035460556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:35 Heat of formation + Delta-G solvation = -56.484981 kcal Electronic energy + Delta-G solvation = -30777.518896 eV Core-core repulsion = 26676.222743 eV Total energy + Delta-G solvation = -4101.296153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95532 -40.51495 -39.79039 -36.83002 -36.39956 -35.72774 -34.19523 -33.33842 -32.37531 -32.27627 -29.51870 -28.84211 -28.04889 -27.12401 -25.18219 -24.88364 -24.01013 -23.25288 -21.87634 -21.44476 -21.25112 -19.04059 -18.69836 -17.89454 -17.40732 -17.16136 -16.88072 -16.69359 -16.17675 -15.92718 -15.86180 -15.54265 -15.43358 -15.22593 -15.03741 -14.94858 -14.69670 -14.53306 -14.16754 -14.02094 -13.73477 -13.50866 -13.20918 -13.18984 -13.08559 -13.00828 -12.90391 -12.65816 -12.57710 -12.31533 -12.24354 -12.11174 -12.10662 -11.92554 -11.85297 -11.34807 -11.11370 -10.87242 -10.81829 -10.55415 -10.41242 -10.19148 -9.79807 -8.74439 -7.94842 -5.43029 -0.28212 0.20626 1.45484 1.47288 1.56845 1.61047 2.03096 2.46959 2.68351 2.75114 3.11986 3.19769 3.46266 3.51373 3.69241 3.74278 3.96018 4.00797 4.04331 4.17637 4.22725 4.23908 4.30917 4.38931 4.45763 4.49588 4.59750 4.68804 4.71142 4.75328 4.76111 4.77773 4.82388 4.84753 4.87178 4.93273 5.00071 5.04285 5.10478 5.12957 5.17433 5.18500 5.27532 5.31675 5.42626 5.48773 5.60444 5.68024 6.24352 6.30280 6.41801 6.92864 7.03643 7.08292 7.71471 8.28093 9.11136 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002148 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.954288 B =13029.692462 C =13530.369089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.177 4.177 4 C -0.038 4.038 5 C -0.209 4.209 6 C 0.564 3.436 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.141 3.859 10 C 0.080 3.920 11 H 0.073 0.927 12 C 0.116 3.884 13 N -0.610 5.610 14 C -0.273 4.273 15 H 0.070 0.930 16 C -0.044 4.044 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.145 3.855 23 C 0.056 3.944 24 O -0.390 6.390 25 C 0.180 3.820 26 C -0.063 4.063 27 C -0.124 4.124 28 C -0.132 4.132 29 N -0.498 5.498 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.056 0.944 42 H -0.001 1.001 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.069 0.931 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.998 -3.788 8.325 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.000 4.000 3 C -0.196 4.196 4 C -0.064 4.064 5 C -0.214 4.214 6 C 0.351 3.649 7 O -0.443 6.443 8 N -0.353 5.353 9 C 0.016 3.984 10 C 0.021 3.979 11 H 0.091 0.909 12 C -0.010 4.010 13 N -0.335 5.335 14 C -0.403 4.403 15 H 0.088 0.912 16 C -0.241 4.241 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.192 1.192 22 C 0.020 3.980 23 C -0.022 4.022 24 O -0.309 6.309 25 C 0.042 3.958 26 C -0.082 4.082 27 C -0.181 4.181 28 C -0.189 4.189 29 N -0.208 5.208 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.193 0.807 34 H 0.180 0.820 35 H 0.250 0.750 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.017 0.983 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.049 -5.248 8.635 27.940 hybrid contribution 1.852 1.813 -0.575 2.655 sum -24.197 -3.435 8.059 25.734 Atomic orbital electron populations 1.20869 0.86144 1.04720 1.04314 1.22165 0.98855 0.88107 0.90832 1.22277 0.94017 1.00604 1.02689 1.22044 0.95503 0.96890 0.91932 1.20725 0.93324 0.96307 1.11034 1.18288 0.86976 0.80156 0.79431 1.90752 1.72526 1.38401 1.42649 1.45740 1.06912 1.38288 1.44333 1.21265 0.79368 0.98907 0.98829 1.22653 0.94169 0.98013 0.83103 0.90912 1.21610 0.92668 0.93438 0.93294 1.44303 1.43395 1.40051 1.05712 1.19443 1.07386 1.14484 0.98961 0.91203 1.25898 0.97905 1.01752 0.98527 1.70234 1.37735 1.36223 1.13328 0.85309 0.78471 0.80133 0.76596 1.20961 1.21827 1.19242 1.21221 0.91403 0.98411 0.86994 1.23129 0.94677 0.92060 0.92318 1.87803 1.73349 1.52076 1.17653 1.21332 0.89233 0.94584 0.90698 1.20367 0.99494 0.90376 0.97958 1.21596 1.01880 1.00016 0.94653 1.21713 1.01887 0.99219 0.96125 1.67375 1.08381 1.30315 1.14743 0.88956 0.90695 0.88003 0.80663 0.81955 0.75004 0.88902 0.91884 0.90915 0.96711 0.93887 0.92544 0.98260 0.92697 0.87308 0.90054 0.91118 0.94023 0.91903 0.93762 0.91178 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.16 71.24 0.72 -0.18 16 2 C 0.14 2.21 6.78 42.57 0.29 2.50 16 3 C -0.18 -2.30 9.72 22.33 0.22 -2.08 16 4 C -0.04 -0.62 9.54 22.73 0.22 -0.40 16 5 C -0.21 -4.85 5.75 -19.99 -0.11 -4.96 16 6 C 0.56 15.32 6.78 86.79 0.59 15.91 16 7 O -0.56 -18.89 14.72 -3.88 -0.06 -18.95 16 8 N -0.70 -17.18 5.39 -465.99 -2.51 -19.69 16 9 C 0.14 3.93 5.37 86.38 0.46 4.40 16 10 C 0.08 2.56 2.86 30.69 0.09 2.65 16 11 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 12 C 0.12 4.71 6.02 86.35 0.52 5.23 16 13 N -0.61 -30.05 3.02 -697.55 -2.11 -32.16 16 14 C -0.27 -14.64 9.57 84.03 0.80 -13.83 16 15 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16 16 C -0.04 -2.42 4.80 84.86 0.41 -2.01 16 17 N -0.93 -54.46 11.72 21.65 0.25 -54.21 16 18 Si 0.97 43.49 29.60 68.60 2.03 45.52 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.15 6.82 5.46 86.35 0.47 7.29 16 23 C 0.06 1.96 6.98 72.08 0.50 2.46 16 24 O -0.39 -13.34 10.14 -148.98 -1.51 -14.85 16 25 C 0.18 4.37 5.51 42.89 0.24 4.61 16 26 C -0.06 -1.53 2.71 -11.54 -0.03 -1.56 16 27 C -0.12 -2.74 9.16 71.98 0.66 -2.08 16 28 C -0.13 -2.75 9.02 71.98 0.65 -2.10 16 29 N -0.50 -10.83 9.67 -171.05 -1.65 -12.48 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16 33 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.16 1.82 8.04 -2.91 -0.02 1.80 16 35 H 0.41 8.51 8.01 -92.71 -0.74 7.77 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 39 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 41 H 0.06 2.90 6.59 -2.39 -0.02 2.89 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.11 3.25 8.14 -2.38 -0.02 3.24 16 45 H 0.08 2.36 5.27 -2.39 -0.01 2.35 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 51 H 0.07 1.35 7.90 -2.39 -0.02 1.33 16 Total: -1.00 -70.72 411.92 1.32 -69.41 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.18 Total: 21.57 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.69 Total: 15.85 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.02 Total: -118.55 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.57 Total: -33.80 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.72 1.32 -69.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035460556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.921 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds