Wall clock time and date at job start Wed Apr 1 2020 05:52:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38354 * 119.45843 * 2 1
4 4 C 1.38355 * 119.30615 * 179.69961 * 3 2 1
5 5 C 1.40022 * 118.28590 * 0.27941 * 4 3 2
6 6 C 1.47845 * 120.56025 * 180.02562 * 5 4 3
7 7 O 1.21552 * 119.99800 * 137.81166 * 6 5 4
8 8 N 1.34771 * 120.00097 * 317.82156 * 6 5 4
9 9 C 1.46496 * 120.00239 * 179.97438 * 8 6 5
10 10 C 1.53000 * 109.47379 * 179.97438 * 9 8 6
11 11 H 1.09002 * 109.51161 * 59.99609 * 10 9 8
12 12 C 1.53295 * 109.51471 * 180.09887 * 10 9 8
13 13 N 1.47148 * 108.38527 * 172.22148 * 12 10 9
14 14 C 1.36943 * 120.97742 * 129.48630 * 13 12 10
15 15 H 1.07997 * 120.00486 * 329.84148 * 14 13 12
16 16 C 1.38813 * 119.99949 * 149.83962 * 14 13 12
17 17 N 1.31619 * 119.99977 * 338.93785 * 16 14 13
18 18 Si 1.86801 * 120.00140 * 158.93509 * 16 14 13
19 19 H 1.48498 * 109.46808 * 84.99547 * 18 16 14
20 20 H 1.48495 * 109.47154 * 204.99535 * 18 16 14
21 21 H 1.48498 * 109.47258 * 324.99650 * 18 16 14
22 22 C 1.47145 * 118.04232 * 309.46866 * 13 12 10
23 23 C 1.53293 * 108.38195 * 50.53015 * 22 13 12
24 24 O 1.42956 * 109.26743 * 307.72297 * 23 22 13
25 25 C 1.39525 * 118.88467 * 359.97438 * 5 4 3
26 26 C 1.50702 * 119.71678 * 179.97438 * 25 5 4
27 27 C 1.53002 * 109.46862 * 111.94358 * 26 25 5
28 28 C 1.53006 * 109.46659 * 231.94171 * 26 25 5
29 29 N 1.31694 * 120.56199 * 359.97438 * 25 5 4
30 30 H 1.09001 * 109.47179 * 90.00057 * 1 2 3
31 31 H 1.08999 * 109.46876 * 210.00239 * 1 2 3
32 32 H 1.08996 * 109.47217 * 330.00167 * 1 2 3
33 33 H 1.08009 * 120.34847 * 359.97438 * 3 2 1
34 34 H 1.08002 * 120.85645 * 180.29694 * 4 3 2
35 35 H 0.97003 * 120.00188 * 359.97438 * 8 6 5
36 36 H 1.08999 * 109.47027 * 299.99350 * 9 8 6
37 37 H 1.09004 * 109.47383 * 59.99268 * 9 8 6
38 38 H 1.09002 * 109.68465 * 291.94928 * 12 10 9
39 39 H 1.09010 * 109.68077 * 52.50093 * 12 10 9
40 40 H 0.97005 * 120.00552 * 180.02562 * 17 16 14
41 41 H 1.08999 * 109.68822 * 170.25710 * 22 13 12
42 42 H 1.09001 * 109.68069 * 290.77482 * 22 13 12
43 43 H 1.09000 * 109.51519 * 67.62574 * 23 22 13
44 44 H 1.09005 * 109.51141 * 187.72709 * 23 22 13
45 45 H 1.08998 * 109.46924 * 351.93851 * 26 25 5
46 46 H 1.09004 * 109.46485 * 179.97438 * 27 26 25
47 47 H 1.08999 * 109.47072 * 299.99342 * 27 26 25
48 48 H 1.09000 * 109.47248 * 60.00041 * 27 26 25
49 49 H 1.08995 * 109.47201 * 60.00185 * 28 26 25
50 50 H 1.08993 * 109.46870 * 180.02562 * 28 26 25
51 51 H 1.09000 * 109.47037 * 300.00281 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1874 1.2047 0.0000
4 6 3.5709 1.2010 0.0063
5 6 4.2312 -0.0338 0.0065
6 6 5.7083 -0.0964 0.0137
7 8 6.2789 -0.9032 0.7215
8 7 6.4221 0.7412 -0.7643
9 6 7.8857 0.6796 -0.7568
10 6 8.4453 1.7279 -1.7205
11 1 8.1221 2.7204 -1.4065
12 6 9.9769 1.6626 -1.7152
13 7 10.4826 2.5430 -2.7803
14 6 11.4531 3.4744 -2.5233
15 1 11.5244 3.9240 -1.5440
16 6 12.3453 3.8406 -3.5217
17 7 12.5474 3.0428 -4.5488
18 14 13.2592 5.4658 -3.4075
19 1 14.4789 5.2906 -2.5788
20 1 13.6463 5.9128 -4.7697
21 1 12.3790 6.4859 -2.7833
22 6 9.9152 2.3929 -4.1296
23 6 8.3866 2.4227 -4.0172
24 8 7.9666 1.4656 -3.0419
25 6 3.4717 -1.2042 0.0009
26 6 4.1629 -2.5433 0.0004
27 6 3.9127 -3.2468 1.3359
28 6 3.6109 -3.4017 -1.1396
29 7 2.1559 -1.1486 -0.0040
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3633 -0.8900 0.5139
32 1 -0.3633 0.8900 0.5138
33 1 1.6442 2.1382 -0.0004
34 1 4.1273 2.1267 0.0113
35 1 5.9667 1.3849 -1.3293
36 1 8.2526 0.8787 0.2501
37 1 8.2093 -0.3125 -1.0718
38 1 10.3554 1.9991 -0.7500
39 1 10.3013 0.6385 -1.9006
40 1 13.1711 3.2984 -5.2464
41 1 10.2527 3.2131 -4.7632
42 1 10.2338 1.4428 -4.5582
43 1 8.0632 3.4180 -3.7124
44 1 7.9457 2.1765 -4.9833
45 1 5.2342 -2.3991 -0.1393
46 1 4.4123 -4.2156 1.3353
47 1 4.3060 -2.6353 2.1479
48 1 2.8414 -3.3910 1.4755
49 1 3.7891 -2.9005 -2.0909
50 1 4.1105 -4.3704 -1.1397
51 1 2.5395 -3.5458 -0.9999
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035460556.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:35
Heat of formation + Delta-G solvation = -56.484981 kcal
Electronic energy + Delta-G solvation = -30777.518896 eV
Core-core repulsion = 26676.222743 eV
Total energy + Delta-G solvation = -4101.296153 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.95532 -40.51495 -39.79039 -36.83002 -36.39956 -35.72774 -34.19523 -33.33842
-32.37531 -32.27627 -29.51870 -28.84211 -28.04889 -27.12401 -25.18219 -24.88364
-24.01013 -23.25288 -21.87634 -21.44476 -21.25112 -19.04059 -18.69836 -17.89454
-17.40732 -17.16136 -16.88072 -16.69359 -16.17675 -15.92718 -15.86180 -15.54265
-15.43358 -15.22593 -15.03741 -14.94858 -14.69670 -14.53306 -14.16754 -14.02094
-13.73477 -13.50866 -13.20918 -13.18984 -13.08559 -13.00828 -12.90391 -12.65816
-12.57710 -12.31533 -12.24354 -12.11174 -12.10662 -11.92554 -11.85297 -11.34807
-11.11370 -10.87242 -10.81829 -10.55415 -10.41242 -10.19148 -9.79807 -8.74439
-7.94842 -5.43029 -0.28212 0.20626 1.45484 1.47288 1.56845 1.61047
2.03096 2.46959 2.68351 2.75114 3.11986 3.19769 3.46266 3.51373
3.69241 3.74278 3.96018 4.00797 4.04331 4.17637 4.22725 4.23908
4.30917 4.38931 4.45763 4.49588 4.59750 4.68804 4.71142 4.75328
4.76111 4.77773 4.82388 4.84753 4.87178 4.93273 5.00071 5.04285
5.10478 5.12957 5.17433 5.18500 5.27532 5.31675 5.42626 5.48773
5.60444 5.68024 6.24352 6.30280 6.41801 6.92864 7.03643 7.08292
7.71471 8.28093 9.11136
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019495 B = 0.002148 C = 0.002069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1435.954288 B =13029.692462 C =13530.369089
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.138 3.862
3 C -0.177 4.177
4 C -0.038 4.038
5 C -0.209 4.209
6 C 0.564 3.436
7 O -0.563 6.563
8 N -0.702 5.702
9 C 0.141 3.859
10 C 0.080 3.920
11 H 0.073 0.927
12 C 0.116 3.884
13 N -0.610 5.610
14 C -0.273 4.273
15 H 0.070 0.930
16 C -0.044 4.044
17 N -0.931 5.931
18 Si 0.968 3.032
19 H -0.283 1.283
20 H -0.292 1.292
21 H -0.268 1.268
22 C 0.145 3.855
23 C 0.056 3.944
24 O -0.390 6.390
25 C 0.180 3.820
26 C -0.063 4.063
27 C -0.124 4.124
28 C -0.132 4.132
29 N -0.498 5.498
30 H 0.092 0.908
31 H 0.074 0.926
32 H 0.101 0.899
33 H 0.176 0.824
34 H 0.163 0.837
35 H 0.414 0.586
36 H 0.093 0.907
37 H 0.063 0.937
38 H 0.072 0.928
39 H 0.015 0.985
40 H 0.252 0.748
41 H 0.056 0.944
42 H -0.001 1.001
43 H 0.055 0.945
44 H 0.109 0.891
45 H 0.081 0.919
46 H 0.070 0.930
47 H 0.041 0.959
48 H 0.062 0.938
49 H 0.043 0.957
50 H 0.069 0.931
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.998 -3.788 8.325 27.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.000 4.000
3 C -0.196 4.196
4 C -0.064 4.064
5 C -0.214 4.214
6 C 0.351 3.649
7 O -0.443 6.443
8 N -0.353 5.353
9 C 0.016 3.984
10 C 0.021 3.979
11 H 0.091 0.909
12 C -0.010 4.010
13 N -0.335 5.335
14 C -0.403 4.403
15 H 0.088 0.912
16 C -0.241 4.241
17 N -0.575 5.575
18 Si 0.795 3.205
19 H -0.210 1.210
20 H -0.218 1.218
21 H -0.192 1.192
22 C 0.020 3.980
23 C -0.022 4.022
24 O -0.309 6.309
25 C 0.042 3.958
26 C -0.082 4.082
27 C -0.181 4.181
28 C -0.189 4.189
29 N -0.208 5.208
30 H 0.110 0.890
31 H 0.093 0.907
32 H 0.120 0.880
33 H 0.193 0.807
34 H 0.180 0.820
35 H 0.250 0.750
36 H 0.111 0.889
37 H 0.081 0.919
38 H 0.091 0.909
39 H 0.033 0.967
40 H 0.061 0.939
41 H 0.075 0.925
42 H 0.017 0.983
43 H 0.073 0.927
44 H 0.127 0.873
45 H 0.099 0.901
46 H 0.089 0.911
47 H 0.060 0.940
48 H 0.081 0.919
49 H 0.062 0.938
50 H 0.088 0.912
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -26.049 -5.248 8.635 27.940
hybrid contribution 1.852 1.813 -0.575 2.655
sum -24.197 -3.435 8.059 25.734
Atomic orbital electron populations
1.20869 0.86144 1.04720 1.04314 1.22165 0.98855 0.88107 0.90832
1.22277 0.94017 1.00604 1.02689 1.22044 0.95503 0.96890 0.91932
1.20725 0.93324 0.96307 1.11034 1.18288 0.86976 0.80156 0.79431
1.90752 1.72526 1.38401 1.42649 1.45740 1.06912 1.38288 1.44333
1.21265 0.79368 0.98907 0.98829 1.22653 0.94169 0.98013 0.83103
0.90912 1.21610 0.92668 0.93438 0.93294 1.44303 1.43395 1.40051
1.05712 1.19443 1.07386 1.14484 0.98961 0.91203 1.25898 0.97905
1.01752 0.98527 1.70234 1.37735 1.36223 1.13328 0.85309 0.78471
0.80133 0.76596 1.20961 1.21827 1.19242 1.21221 0.91403 0.98411
0.86994 1.23129 0.94677 0.92060 0.92318 1.87803 1.73349 1.52076
1.17653 1.21332 0.89233 0.94584 0.90698 1.20367 0.99494 0.90376
0.97958 1.21596 1.01880 1.00016 0.94653 1.21713 1.01887 0.99219
0.96125 1.67375 1.08381 1.30315 1.14743 0.88956 0.90695 0.88003
0.80663 0.81955 0.75004 0.88902 0.91884 0.90915 0.96711 0.93887
0.92544 0.98260 0.92697 0.87308 0.90054 0.91118 0.94023 0.91903
0.93762 0.91178 0.91423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.90 10.16 71.24 0.72 -0.18 16
2 C 0.14 2.21 6.78 42.57 0.29 2.50 16
3 C -0.18 -2.30 9.72 22.33 0.22 -2.08 16
4 C -0.04 -0.62 9.54 22.73 0.22 -0.40 16
5 C -0.21 -4.85 5.75 -19.99 -0.11 -4.96 16
6 C 0.56 15.32 6.78 86.79 0.59 15.91 16
7 O -0.56 -18.89 14.72 -3.88 -0.06 -18.95 16
8 N -0.70 -17.18 5.39 -465.99 -2.51 -19.69 16
9 C 0.14 3.93 5.37 86.38 0.46 4.40 16
10 C 0.08 2.56 2.86 30.69 0.09 2.65 16
11 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
12 C 0.12 4.71 6.02 86.35 0.52 5.23 16
13 N -0.61 -30.05 3.02 -697.55 -2.11 -32.16 16
14 C -0.27 -14.64 9.57 84.03 0.80 -13.83 16
15 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16
16 C -0.04 -2.42 4.80 84.86 0.41 -2.01 16
17 N -0.93 -54.46 11.72 21.65 0.25 -54.21 16
18 Si 0.97 43.49 29.60 68.60 2.03 45.52 16
19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
22 C 0.15 6.82 5.46 86.35 0.47 7.29 16
23 C 0.06 1.96 6.98 72.08 0.50 2.46 16
24 O -0.39 -13.34 10.14 -148.98 -1.51 -14.85 16
25 C 0.18 4.37 5.51 42.89 0.24 4.61 16
26 C -0.06 -1.53 2.71 -11.54 -0.03 -1.56 16
27 C -0.12 -2.74 9.16 71.98 0.66 -2.08 16
28 C -0.13 -2.75 9.02 71.98 0.65 -2.10 16
29 N -0.50 -10.83 9.67 -171.05 -1.65 -12.48 16
30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16
33 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16
34 H 0.16 1.82 8.04 -2.91 -0.02 1.80 16
35 H 0.41 8.51 8.01 -92.71 -0.74 7.77 16
36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
37 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16
38 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16
39 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16
40 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16
41 H 0.06 2.90 6.59 -2.39 -0.02 2.89 16
42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16
43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
44 H 0.11 3.25 8.14 -2.38 -0.02 3.24 16
45 H 0.08 2.36 5.27 -2.39 -0.01 2.35 16
46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
47 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
49 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
50 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16
51 H 0.07 1.35 7.90 -2.39 -0.02 1.33 16
Total: -1.00 -70.72 411.92 1.32 -69.41
By element:
Atomic # 1 Polarization: 21.39 SS G_CDS: 0.18 Total: 21.57 kcal
Atomic # 6 Polarization: 9.16 SS G_CDS: 6.69 Total: 15.85 kcal
Atomic # 7 Polarization: -112.53 SS G_CDS: -6.02 Total: -118.55 kcal
Atomic # 8 Polarization: -32.23 SS G_CDS: -1.57 Total: -33.80 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal
Total: -70.72 1.32 -69.41 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035460556.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.921 kcal
(2) G-P(sol) polarization free energy of solvation -70.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds