Wall clock time and date at job start Wed Apr 1 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38355 * 119.46389 * 2 1 4 4 C 1.38350 * 119.30848 * 179.72072 * 3 2 1 5 5 C 1.40024 * 118.28676 * 0.51989 * 4 3 2 6 6 C 1.47833 * 120.56062 * 179.73321 * 5 4 3 7 7 O 1.21555 * 120.00591 * 228.12943 * 6 5 4 8 8 N 1.34781 * 120.00306 * 48.12859 * 6 5 4 9 9 C 1.46501 * 119.99711 * 5.47956 * 8 6 5 10 10 C 1.46499 * 120.00341 * 185.47587 * 8 6 5 11 11 H 1.08995 * 110.77766 * 3.23930 * 10 8 6 12 12 C 1.54325 * 110.71719 * 126.48084 * 10 8 6 13 13 N 1.47016 * 107.27351 * 140.55835 * 12 10 8 14 14 C 1.36941 * 125.65109 * 181.09118 * 13 12 10 15 15 H 1.07993 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99662 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00342 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99408 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47021 * 90.00614 * 18 16 14 20 20 H 1.48506 * 109.46978 * 210.00246 * 18 16 14 21 21 H 1.48498 * 109.47338 * 330.00301 * 18 16 14 22 22 C 1.47428 * 108.70431 * 1.05448 * 13 12 10 23 23 C 1.54913 * 104.83241 * 335.87547 * 22 13 12 24 24 H 1.09000 * 111.00109 * 278.89665 * 23 22 13 25 25 O 1.42893 * 111.00773 * 155.07866 * 23 22 13 26 26 C 1.39523 * 118.88164 * 359.46348 * 5 4 3 27 27 C 1.50698 * 119.71655 * 180.27543 * 26 5 4 28 28 C 1.53000 * 109.47167 * 126.54324 * 27 26 5 29 29 C 1.53005 * 109.46773 * 246.53796 * 27 26 5 30 30 N 1.31694 * 120.56501 * 0.29583 * 26 5 4 31 31 H 1.09004 * 109.47549 * 270.02097 * 1 2 3 32 32 H 1.08997 * 109.47359 * 30.02157 * 1 2 3 33 33 H 1.09002 * 109.47303 * 150.01924 * 1 2 3 34 34 H 1.08011 * 120.34098 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.85941 * 180.25951 * 4 3 2 36 36 H 1.09000 * 109.46850 * 275.50949 * 9 8 6 37 37 H 1.09008 * 109.47144 * 35.49948 * 9 8 6 38 38 H 1.08994 * 109.47503 * 155.50510 * 9 8 6 39 39 H 1.08995 * 109.88587 * 21.13409 * 12 10 8 40 40 H 1.09009 * 110.00658 * 260.04590 * 12 10 8 41 41 H 0.97002 * 119.99877 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.37307 * 217.03642 * 22 13 12 43 43 H 1.09004 * 110.36892 * 94.70513 * 22 13 12 44 44 H 0.96698 * 114.00129 * 61.45681 * 25 23 22 45 45 H 1.08994 * 109.47462 * 6.53844 * 27 26 5 46 46 H 1.09003 * 109.47567 * 59.99401 * 28 27 26 47 47 H 1.09001 * 109.47326 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.46985 * 299.99445 * 28 27 26 49 49 H 1.08997 * 109.46863 * 60.00118 * 29 27 26 50 50 H 1.09001 * 109.46957 * 180.02562 * 29 27 26 51 51 H 1.09003 * 109.47016 * 300.00020 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 0.0059 5 6 4.2312 -0.0339 0.0005 6 6 5.7082 -0.0966 0.0004 7 8 6.2859 -0.8207 -0.7866 8 7 6.4144 0.6494 0.8730 9 6 5.7194 1.4296 1.8999 10 6 7.8770 0.6799 0.7948 11 1 8.2310 0.0948 -0.0540 12 6 8.3888 2.1332 0.7078 13 7 9.6017 2.2190 1.5343 14 6 10.3493 3.3478 1.7396 15 1 10.0611 4.2785 1.2739 16 6 11.4777 3.2955 2.5465 17 7 11.8292 2.1611 3.1137 18 14 12.4971 4.8355 2.8272 19 1 11.9836 5.5588 4.0181 20 1 13.9152 4.4562 3.0519 21 1 12.4031 5.7156 1.6348 22 6 9.8793 0.8888 2.1061 23 6 8.5083 0.1676 2.1163 24 1 7.9134 0.4715 2.9777 25 8 8.6756 -1.2512 2.0877 26 6 3.4716 -1.2043 0.0008 27 6 4.1627 -2.5434 0.0013 28 6 3.6333 -3.3901 1.1605 29 6 3.8863 -3.2604 -1.3217 30 7 2.1558 -1.1487 0.0004 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6442 2.1382 -0.0004 35 1 4.1274 2.1265 0.0102 36 1 5.4094 2.3869 1.4810 37 1 4.8413 0.8809 2.2409 38 1 6.3900 1.6014 2.7417 39 1 7.6307 2.8167 1.0899 40 1 8.6263 2.3837 -0.3262 41 1 12.6175 2.1248 3.6779 42 1 10.2648 0.9850 3.1210 43 1 10.5881 0.3470 1.4798 44 1 9.1540 -1.6063 2.8493 45 1 5.2366 -2.3981 0.1184 46 1 2.5594 -3.5355 1.0436 47 1 4.1329 -4.3589 1.1606 48 1 3.8303 -2.8794 2.1031 49 1 4.2634 -2.6572 -2.1475 50 1 4.3858 -4.2293 -1.3212 51 1 2.8123 -3.4058 -1.4387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047474655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:29 Heat of formation + Delta-G solvation = -18.791845 kcal Electronic energy + Delta-G solvation = -31959.062232 eV Core-core repulsion = 27859.400576 eV Total energy + Delta-G solvation = -4099.661656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.11121 -39.48402 -37.79386 -35.85548 -35.17655 -34.80046 -33.21945 -31.83075 -31.56704 -28.94027 -28.10493 -27.34802 -27.11772 -26.56960 -24.69767 -24.05146 -22.94895 -20.89181 -20.53256 -20.41426 -19.07820 -17.57007 -17.14979 -16.89084 -16.63861 -15.95180 -15.86457 -15.06397 -14.87472 -14.67162 -14.58927 -14.31782 -13.94961 -13.83655 -13.52204 -13.36228 -13.26255 -13.00008 -12.76267 -12.74146 -12.49366 -12.47351 -12.36045 -12.11314 -12.03357 -11.79021 -11.49848 -11.40722 -11.28596 -11.15914 -11.03828 -10.87646 -10.77968 -10.24005 -10.03934 -10.00100 -9.92606 -9.74978 -9.51058 -9.27803 -8.97734 -8.77578 -8.39629 -6.98991 -5.77446 -3.21034 0.61931 1.02345 2.71997 3.02401 3.33228 3.38803 3.40830 3.53734 3.91487 4.32634 4.37943 4.43728 4.51576 4.66735 4.79622 5.03224 5.09892 5.13788 5.16710 5.18202 5.25578 5.27821 5.30658 5.36219 5.45954 5.56081 5.58047 5.62450 5.67283 5.68764 5.73905 5.78651 5.83010 5.85769 5.87145 5.98246 6.04701 6.05914 6.10479 6.25910 6.29799 6.42849 6.49351 6.53732 6.84503 7.29053 7.44297 7.50085 7.66815 7.77600 8.12480 8.21031 8.24733 9.07488 9.68095 10.30185 11.26279 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002761 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.922918 B =10139.151993 C =11092.218992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.144 3.856 3 C -0.185 4.185 4 C -0.038 4.038 5 C -0.180 4.180 6 C 0.565 3.435 7 O -0.522 6.522 8 N -0.593 5.593 9 C 0.076 3.924 10 C 0.137 3.863 11 H 0.113 0.887 12 C 0.131 3.869 13 N -0.598 5.598 14 C -0.225 4.225 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.918 3.082 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.281 1.281 22 C 0.128 3.872 23 C 0.064 3.936 24 H 0.059 0.941 25 O -0.562 6.562 26 C 0.193 3.807 27 C -0.058 4.058 28 C -0.137 4.137 29 C -0.132 4.132 30 N -0.481 5.481 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.254 0.746 42 H 0.112 0.888 43 H 0.025 0.975 44 H 0.375 0.625 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.440 -5.201 -2.409 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.205 4.205 4 C -0.064 4.064 5 C -0.185 4.185 6 C 0.352 3.648 7 O -0.399 6.399 8 N -0.325 5.325 9 C -0.067 4.067 10 C 0.033 3.967 11 H 0.131 0.869 12 C 0.004 3.996 13 N -0.326 5.326 14 C -0.353 4.353 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.206 1.206 22 C 0.002 3.998 23 C 0.004 3.996 24 H 0.077 0.923 25 O -0.367 6.367 26 C 0.055 3.945 27 C -0.077 4.077 28 C -0.195 4.195 29 C -0.189 4.189 30 N -0.190 5.190 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.130 0.870 43 H 0.043 0.957 44 H 0.221 0.779 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.739 -6.214 -3.286 22.847 hybrid contribution 1.365 1.834 0.728 2.399 sum -20.374 -4.380 -2.558 20.996 Atomic orbital electron populations 1.20746 0.88624 1.03599 1.03232 1.21464 0.97120 0.88271 0.92539 1.21862 0.94404 0.99455 1.04735 1.21803 0.94499 0.97400 0.92722 1.20796 0.94652 0.94994 1.08072 1.18040 0.86077 0.79781 0.80853 1.90782 1.71055 1.38492 1.39585 1.47697 1.06880 1.46263 1.31661 1.21863 0.97597 0.95294 0.91958 1.22190 0.77079 0.97800 0.99587 0.86913 1.21533 0.90336 0.92140 0.95559 1.44267 1.26914 1.06805 1.54627 1.19076 1.04411 0.87250 1.24591 0.90192 1.24809 0.98263 0.97470 0.99909 1.69744 1.27280 1.23740 1.36272 0.86029 0.79467 0.81720 0.78004 1.21501 1.21546 1.20636 1.22596 0.90302 0.84187 1.02723 1.23738 0.99175 0.80765 0.95957 0.92292 1.86449 1.79780 1.21037 1.49410 1.21292 0.88587 0.94494 0.90174 1.20352 1.00615 0.89625 0.97091 1.21757 1.01699 0.99185 0.96845 1.21671 1.01596 0.99905 0.95748 1.67336 1.08875 1.28884 1.13929 0.90170 0.90570 0.90330 0.84319 0.84032 0.92389 0.91687 0.89892 0.94973 0.95006 0.93528 0.87035 0.95654 0.77858 0.88009 0.91748 0.92134 0.93146 0.92490 0.92096 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.16 36.00 0.37 -0.32 16 2 C 0.14 1.45 6.78 -82.51 -0.56 0.89 16 3 C -0.18 -1.69 9.72 -39.50 -0.38 -2.07 16 4 C -0.04 -0.42 8.26 -38.87 -0.32 -0.74 16 5 C -0.18 -2.47 4.74 -104.82 -0.50 -2.97 16 6 C 0.57 9.33 6.43 -12.33 -0.08 9.25 16 7 O -0.52 -10.26 14.53 5.32 0.08 -10.19 16 8 N -0.59 -9.46 2.89 -172.95 -0.50 -9.96 16 9 C 0.08 0.96 7.60 59.85 0.45 1.41 16 10 C 0.14 2.60 3.07 -66.09 -0.20 2.40 16 11 H 0.11 2.41 7.03 -51.93 -0.37 2.04 16 12 C 0.13 2.69 6.87 -3.07 -0.02 2.67 16 13 N -0.60 -14.79 3.39 -170.07 -0.58 -15.36 16 14 C -0.23 -6.04 10.27 -15.06 -0.15 -6.19 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -25.87 10.09 55.49 0.56 -25.31 16 18 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.13 3.01 5.62 -2.53 -0.01 2.99 16 23 C 0.06 1.24 3.95 -24.58 -0.10 1.15 16 24 H 0.06 1.09 6.46 -51.93 -0.34 0.75 16 25 O -0.56 -10.36 13.47 -35.23 -0.47 -10.83 16 26 C 0.19 2.62 5.51 -82.17 -0.45 2.17 16 27 C -0.06 -0.78 2.78 -91.77 -0.25 -1.03 16 28 C -0.14 -1.57 9.04 37.16 0.34 -1.24 16 29 C -0.13 -1.61 9.15 37.16 0.34 -1.27 16 30 N -0.48 -5.93 9.70 -5.42 -0.05 -5.99 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.14 1.33 6.64 -52.49 -0.35 0.99 16 36 H 0.06 0.62 6.83 -51.93 -0.35 0.27 16 37 H 0.06 0.73 6.95 -51.92 -0.36 0.37 16 38 H 0.08 1.11 6.47 -51.93 -0.34 0.78 16 39 H 0.03 0.62 6.84 -51.93 -0.36 0.26 16 40 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.37 5.39 9.11 45.56 0.42 5.80 16 45 H 0.10 1.63 5.44 -51.93 -0.28 1.34 16 46 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -32.47 401.51 -8.81 -41.28 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.23 Total: 7.19 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.64 Total: 6.76 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.57 Total: -56.61 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.40 Total: -21.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.47 -8.81 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047474655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.487 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds