Wall clock time and date at job start Wed Apr 1 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38355 * 119.46389 * 2 1 4 4 C 1.38350 * 119.30848 * 179.72072 * 3 2 1 5 5 C 1.40024 * 118.28676 * 0.51989 * 4 3 2 6 6 C 1.47833 * 120.56062 * 179.73321 * 5 4 3 7 7 O 1.21555 * 120.00591 * 228.12943 * 6 5 4 8 8 N 1.34781 * 120.00306 * 48.12859 * 6 5 4 9 9 C 1.46501 * 119.99711 * 5.47956 * 8 6 5 10 10 C 1.46499 * 120.00341 * 185.47587 * 8 6 5 11 11 H 1.08995 * 110.77766 * 3.23930 * 10 8 6 12 12 C 1.54325 * 110.71719 * 126.48084 * 10 8 6 13 13 N 1.47016 * 107.27351 * 140.55835 * 12 10 8 14 14 C 1.36941 * 125.65109 * 181.09118 * 13 12 10 15 15 H 1.07993 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99662 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00342 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99408 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47021 * 90.00614 * 18 16 14 20 20 H 1.48506 * 109.46978 * 210.00246 * 18 16 14 21 21 H 1.48498 * 109.47338 * 330.00301 * 18 16 14 22 22 C 1.47428 * 108.70431 * 1.05448 * 13 12 10 23 23 C 1.54913 * 104.83241 * 335.87547 * 22 13 12 24 24 H 1.09000 * 111.00109 * 278.89665 * 23 22 13 25 25 O 1.42893 * 111.00773 * 155.07866 * 23 22 13 26 26 C 1.39523 * 118.88164 * 359.46348 * 5 4 3 27 27 C 1.50698 * 119.71655 * 180.27543 * 26 5 4 28 28 C 1.53000 * 109.47167 * 126.54324 * 27 26 5 29 29 C 1.53005 * 109.46773 * 246.53796 * 27 26 5 30 30 N 1.31694 * 120.56501 * 0.29583 * 26 5 4 31 31 H 1.09004 * 109.47549 * 270.02097 * 1 2 3 32 32 H 1.08997 * 109.47359 * 30.02157 * 1 2 3 33 33 H 1.09002 * 109.47303 * 150.01924 * 1 2 3 34 34 H 1.08011 * 120.34098 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.85941 * 180.25951 * 4 3 2 36 36 H 1.09000 * 109.46850 * 275.50949 * 9 8 6 37 37 H 1.09008 * 109.47144 * 35.49948 * 9 8 6 38 38 H 1.08994 * 109.47503 * 155.50510 * 9 8 6 39 39 H 1.08995 * 109.88587 * 21.13409 * 12 10 8 40 40 H 1.09009 * 110.00658 * 260.04590 * 12 10 8 41 41 H 0.97002 * 119.99877 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.37307 * 217.03642 * 22 13 12 43 43 H 1.09004 * 110.36892 * 94.70513 * 22 13 12 44 44 H 0.96698 * 114.00129 * 61.45681 * 25 23 22 45 45 H 1.08994 * 109.47462 * 6.53844 * 27 26 5 46 46 H 1.09003 * 109.47567 * 59.99401 * 28 27 26 47 47 H 1.09001 * 109.47326 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.46985 * 299.99445 * 28 27 26 49 49 H 1.08997 * 109.46863 * 60.00118 * 29 27 26 50 50 H 1.09001 * 109.46957 * 180.02562 * 29 27 26 51 51 H 1.09003 * 109.47016 * 300.00020 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 0.0059 5 6 4.2312 -0.0339 0.0005 6 6 5.7082 -0.0966 0.0004 7 8 6.2859 -0.8207 -0.7866 8 7 6.4144 0.6494 0.8730 9 6 5.7194 1.4296 1.8999 10 6 7.8770 0.6799 0.7948 11 1 8.2310 0.0948 -0.0540 12 6 8.3888 2.1332 0.7078 13 7 9.6017 2.2190 1.5343 14 6 10.3493 3.3478 1.7396 15 1 10.0611 4.2785 1.2739 16 6 11.4777 3.2955 2.5465 17 7 11.8292 2.1611 3.1137 18 14 12.4971 4.8355 2.8272 19 1 11.9836 5.5588 4.0181 20 1 13.9152 4.4562 3.0519 21 1 12.4031 5.7156 1.6348 22 6 9.8793 0.8888 2.1061 23 6 8.5083 0.1676 2.1163 24 1 7.9134 0.4715 2.9777 25 8 8.6756 -1.2512 2.0877 26 6 3.4716 -1.2043 0.0008 27 6 4.1627 -2.5434 0.0013 28 6 3.6333 -3.3901 1.1605 29 6 3.8863 -3.2604 -1.3217 30 7 2.1558 -1.1487 0.0004 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6442 2.1382 -0.0004 35 1 4.1274 2.1265 0.0102 36 1 5.4094 2.3869 1.4810 37 1 4.8413 0.8809 2.2409 38 1 6.3900 1.6014 2.7417 39 1 7.6307 2.8167 1.0899 40 1 8.6263 2.3837 -0.3262 41 1 12.6175 2.1248 3.6779 42 1 10.2648 0.9850 3.1210 43 1 10.5881 0.3470 1.4798 44 1 9.1540 -1.6063 2.8493 45 1 5.2366 -2.3981 0.1184 46 1 2.5594 -3.5355 1.0436 47 1 4.1329 -4.3589 1.1606 48 1 3.8303 -2.8794 2.1031 49 1 4.2634 -2.6572 -2.1475 50 1 4.3858 -4.2293 -1.3212 51 1 2.8123 -3.4058 -1.4387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047474655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:28 Heat of formation + Delta-G solvation = -41.032505 kcal Electronic energy + Delta-G solvation = -31960.026659 eV Core-core repulsion = 27859.400576 eV Total energy + Delta-G solvation = -4100.626083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12953 -40.73674 -39.30132 -36.92650 -36.69144 -36.22002 -34.34608 -33.50598 -32.37228 -30.53259 -29.27228 -28.75896 -28.07061 -27.83093 -26.38027 -25.10336 -23.87402 -22.39866 -22.12716 -21.40399 -20.45433 -19.05208 -18.87620 -18.05445 -17.79135 -17.46142 -16.76200 -16.72996 -15.98718 -15.89900 -15.61599 -15.44606 -15.40186 -15.09479 -14.84531 -14.74656 -14.31514 -14.16828 -14.07922 -13.81460 -13.57047 -13.48670 -13.37730 -13.20061 -13.15525 -13.05546 -12.97946 -12.89399 -12.77215 -12.68337 -12.32718 -12.12453 -12.06398 -11.93939 -11.85081 -11.48810 -11.21393 -10.95975 -10.81691 -10.77116 -10.42398 -9.86054 -9.70579 -8.98605 -7.81726 -5.28717 -0.27100 0.20216 1.48194 1.49880 1.52380 1.58516 1.77934 2.47040 2.66240 3.04485 3.10160 3.30142 3.35216 3.60284 3.65760 3.72846 3.77339 3.98861 4.01146 4.07560 4.15837 4.20661 4.22099 4.28355 4.34737 4.42726 4.47455 4.54091 4.68473 4.74571 4.76218 4.78122 4.82893 4.83504 4.84762 4.91543 4.94515 5.01911 5.09093 5.13157 5.19533 5.28206 5.34842 5.39030 5.41611 5.45266 5.65517 5.68292 6.18782 6.23892 6.80921 6.92171 6.97643 7.03094 7.68054 8.30497 9.20125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002761 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.922918 B =10139.151993 C =11092.218992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.140 3.860 3 C -0.172 4.172 4 C -0.037 4.037 5 C -0.202 4.202 6 C 0.565 3.435 7 O -0.565 6.565 8 N -0.591 5.591 9 C 0.072 3.928 10 C 0.149 3.851 11 H 0.083 0.917 12 C 0.135 3.865 13 N -0.617 5.617 14 C -0.240 4.240 15 H 0.087 0.913 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.983 3.017 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.271 1.271 22 C 0.136 3.864 23 C 0.084 3.916 24 H 0.077 0.923 25 O -0.570 6.570 26 C 0.180 3.820 27 C -0.061 4.061 28 C -0.129 4.129 29 C -0.125 4.125 30 N -0.495 5.495 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.249 0.751 42 H 0.089 0.911 43 H -0.011 1.011 44 H 0.392 0.608 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.044 0.956 49 H 0.037 0.963 50 H 0.069 0.931 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.709 -3.442 -1.937 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.062 4.062 5 C -0.207 4.207 6 C 0.354 3.646 7 O -0.445 6.445 8 N -0.322 5.322 9 C -0.069 4.069 10 C 0.044 3.956 11 H 0.102 0.898 12 C 0.008 3.992 13 N -0.344 5.344 14 C -0.368 4.368 15 H 0.105 0.895 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.811 3.189 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.196 1.196 22 C 0.010 3.990 23 C 0.023 3.977 24 H 0.094 0.906 25 O -0.377 6.377 26 C 0.042 3.958 27 C -0.080 4.080 28 C -0.186 4.186 29 C -0.182 4.182 30 N -0.205 5.205 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.196 0.804 35 H 0.176 0.824 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.007 0.993 44 H 0.242 0.758 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.048 -4.447 -2.803 25.593 hybrid contribution 2.291 1.271 0.543 2.675 sum -22.757 -3.176 -2.260 23.088 Atomic orbital electron populations 1.20866 0.85943 1.04719 1.04411 1.22180 0.98881 0.87992 0.90753 1.22266 0.93610 1.00724 1.02571 1.22030 0.95495 0.96704 0.92008 1.20603 0.92554 0.96554 1.11013 1.18526 0.87384 0.78746 0.79946 1.90753 1.72201 1.40227 1.41286 1.47680 1.05391 1.46730 1.32434 1.22092 0.97652 0.96259 0.90907 1.21737 0.79372 0.96303 0.98166 0.89841 1.21597 0.89443 0.93557 0.94561 1.44505 1.27975 1.06582 1.55382 1.19458 1.04847 0.88161 1.24348 0.89482 1.25648 0.99529 1.00312 1.00068 1.69972 1.27429 1.25533 1.36844 0.85007 0.77220 0.78440 0.78193 1.20720 1.22314 1.19614 1.22341 0.92016 0.84263 1.00375 1.23456 0.96683 0.80783 0.96792 0.90567 1.86429 1.80058 1.20414 1.50838 1.21245 0.89301 0.94243 0.91026 1.20286 0.98887 0.90695 0.98171 1.21685 1.02021 0.99138 0.95761 1.21607 1.02092 0.99855 0.94661 1.67377 1.08036 1.30342 1.14715 0.88761 0.88003 0.90712 0.80433 0.82430 0.89795 0.89955 0.90553 0.92573 0.95706 0.94093 0.89294 0.99270 0.75831 0.91199 0.91076 0.91302 0.93644 0.94363 0.91195 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.16 71.23 0.72 -0.20 16 2 C 0.14 2.35 6.78 42.57 0.29 2.63 16 3 C -0.17 -2.44 9.72 22.32 0.22 -2.22 16 4 C -0.04 -0.69 8.26 22.73 0.19 -0.51 16 5 C -0.20 -5.37 4.74 -19.99 -0.09 -5.46 16 6 C 0.56 18.85 6.43 86.78 0.56 19.40 16 7 O -0.57 -23.32 14.53 -3.89 -0.06 -23.38 16 8 N -0.59 -18.58 2.89 -819.36 -2.36 -20.95 16 9 C 0.07 1.66 7.60 127.77 0.97 2.64 16 10 C 0.15 5.77 3.07 46.18 0.14 5.91 16 11 H 0.08 3.75 7.03 -2.39 -0.02 3.74 16 12 C 0.13 5.53 6.87 86.73 0.60 6.12 16 13 N -0.62 -30.98 3.39 -691.98 -2.35 -33.33 16 14 C -0.24 -12.92 10.27 84.03 0.86 -12.06 16 15 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 16 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 17 N -0.95 -54.59 10.09 21.65 0.22 -54.37 16 18 Si 0.98 44.05 29.55 68.60 2.03 46.08 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 C 0.14 6.66 5.62 86.86 0.49 7.15 16 23 C 0.08 3.29 3.95 31.99 0.13 3.41 16 24 H 0.08 2.76 6.46 -2.39 -0.02 2.75 16 25 O -0.57 -21.47 13.47 -148.98 -2.01 -23.47 16 26 C 0.18 4.78 5.51 42.89 0.24 5.01 16 27 C -0.06 -1.67 2.78 -11.54 -0.03 -1.70 16 28 C -0.13 -2.89 9.04 71.98 0.65 -2.24 16 29 C -0.12 -3.10 9.15 71.98 0.66 -2.44 16 30 N -0.49 -11.32 9.70 -171.06 -1.66 -12.98 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.18 1.12 8.06 -2.90 -0.02 1.10 16 35 H 0.16 2.39 6.64 -2.91 -0.02 2.38 16 36 H 0.08 1.51 6.83 -2.39 -0.02 1.49 16 37 H 0.08 1.64 6.95 -2.38 -0.02 1.62 16 38 H 0.08 1.88 6.47 -2.39 -0.02 1.87 16 39 H 0.06 2.05 6.84 -2.39 -0.02 2.04 16 40 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.09 4.77 5.87 -2.39 -0.01 4.76 16 43 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 44 H 0.39 11.45 9.11 -74.06 -0.67 10.78 16 45 H 0.07 2.36 5.44 -2.39 -0.01 2.35 16 46 H 0.07 1.49 7.93 -2.39 -0.02 1.47 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.59 401.51 1.13 -72.47 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.27 Total: 27.46 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.05 Total: 22.47 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.15 Total: -121.63 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -2.06 Total: -46.85 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -73.59 1.13 -72.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047474655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.433 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds