Wall clock time and date at job start Wed Apr 1 2020 05:52:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38350 * 119.46118 * 2 1
4 4 C 1.38355 * 119.30673 * 179.97438 * 3 2 1
5 5 C 1.40027 * 118.28671 * 359.97438 * 4 3 2
6 6 C 1.47836 * 120.55812 * 179.97438 * 5 4 3
7 7 O 1.21562 * 119.99963 * 174.42635 * 6 5 4
8 8 N 1.34769 * 120.00306 * 354.42579 * 6 5 4
9 9 C 1.46499 * 120.00381 * 179.97438 * 8 6 5
10 10 C 1.53001 * 109.47532 * 180.02562 * 9 8 6
11 11 H 1.08995 * 109.67591 * 62.18523 * 10 9 8
12 12 C 1.53301 * 109.68492 * 182.70668 * 10 9 8
13 13 O 1.42961 * 109.22253 * 172.06230 * 12 10 9
14 14 C 1.42958 * 114.16760 * 297.41815 * 13 12 10
15 15 C 1.53300 * 109.22466 * 62.58130 * 14 13 12
16 16 N 1.47159 * 109.68130 * 301.66942 * 10 9 8
17 17 C 1.36933 * 120.97938 * 9.67667 * 16 10 9
18 18 H 1.08005 * 119.99973 * 326.91842 * 17 16 10
19 19 C 1.38814 * 120.00226 * 146.92521 * 17 16 10
20 20 N 1.31623 * 119.99439 * 349.86542 * 19 17 16
21 21 Si 1.86791 * 120.00313 * 169.86526 * 19 17 16
22 22 H 1.48501 * 109.47230 * 359.97438 * 21 19 17
23 23 H 1.48495 * 109.47371 * 120.00055 * 21 19 17
24 24 H 1.48503 * 109.47237 * 240.00279 * 21 19 17
25 25 C 1.39523 * 118.88045 * 0.25441 * 5 4 3
26 26 C 1.50703 * 119.71673 * 179.74517 * 25 5 4
27 27 C 1.53005 * 109.46868 * 83.57232 * 26 25 5
28 28 C 1.53001 * 109.47222 * 203.57167 * 26 25 5
29 29 N 1.31698 * 120.56509 * 359.49626 * 25 5 4
30 30 H 1.09000 * 109.47260 * 90.00565 * 1 2 3
31 31 H 1.09010 * 109.47246 * 210.00344 * 1 2 3
32 32 H 1.08999 * 109.46941 * 329.99820 * 1 2 3
33 33 H 1.08002 * 120.34773 * 359.97438 * 3 2 1
34 34 H 1.08001 * 120.86046 * 180.02562 * 4 3 2
35 35 H 0.97002 * 120.00180 * 0.02562 * 8 6 5
36 36 H 1.09001 * 109.47012 * 60.00245 * 9 8 6
37 37 H 1.08995 * 109.47343 * 300.00593 * 9 8 6
38 38 H 1.09002 * 109.50794 * 291.98788 * 12 10 9
39 39 H 1.08996 * 109.51029 * 52.08504 * 12 10 9
40 40 H 1.09002 * 109.51171 * 182.50792 * 14 13 12
41 41 H 1.09000 * 109.51086 * 302.65780 * 14 13 12
42 42 H 1.08999 * 109.67769 * 67.41735 * 15 14 13
43 43 H 1.08995 * 109.67980 * 187.97617 * 15 14 13
44 44 H 0.97002 * 119.99515 * 179.97438 * 20 19 17
45 45 H 1.09006 * 109.46938 * 323.57598 * 26 25 5
46 46 H 1.08999 * 109.47148 * 300.00002 * 27 26 25
47 47 H 1.08997 * 109.47377 * 59.99950 * 27 26 25
48 48 H 1.08999 * 109.46866 * 179.97438 * 27 26 25
49 49 H 1.09002 * 109.46669 * 59.99943 * 28 26 25
50 50 H 1.08998 * 109.46572 * 179.97438 * 28 26 25
51 51 H 1.08997 * 109.46957 * 300.00009 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1874 1.2046 0.0000
4 6 3.5710 1.2009 0.0005
5 6 4.2312 -0.0340 0.0016
6 6 5.7083 -0.0966 0.0017
7 8 6.2712 -1.1690 0.1049
8 7 6.4307 1.0354 -0.1127
9 6 7.8944 0.9734 -0.1121
10 6 8.4648 2.3861 -0.2529
11 1 8.1606 2.9915 0.6009
12 6 9.9949 2.3208 -0.3207
13 8 10.5078 3.6173 -0.6367
14 6 10.0973 4.1141 -1.9128
15 6 8.5725 4.2712 -1.9266
16 7 7.9701 2.9987 -1.4962
17 6 6.9804 2.4020 -2.2307
18 1 6.9095 1.3249 -2.2668
19 6 6.0684 3.1814 -2.9290
20 7 6.0264 4.4819 -2.7305
21 14 4.9008 2.3847 -4.1501
22 1 5.1487 0.9211 -4.1894
23 1 3.4986 2.6387 -3.7323
24 1 5.1273 2.9610 -5.4999
25 6 3.4716 -1.2043 -0.0033
26 6 4.1627 -2.5435 -0.0081
27 6 4.5393 -2.9281 1.4242
28 6 3.2220 -3.6008 -0.5895
29 7 2.1558 -1.1487 0.0011
30 1 -0.3634 -0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5139
32 1 -0.3633 0.8900 0.5139
33 1 1.6443 2.1381 -0.0004
34 1 4.1275 2.1265 0.0010
35 1 5.9816 1.8912 -0.1947
36 1 8.2324 0.3598 -0.9472
37 1 8.2391 0.5345 0.8241
38 1 10.3886 1.9985 0.6433
39 1 10.2952 1.6117 -1.0921
40 1 10.5648 5.0819 -2.0943
41 1 10.3980 3.4121 -2.6906
42 1 8.2792 5.0664 -1.2413
43 1 8.2375 4.5130 -2.9353
44 1 5.3893 5.0266 -3.2187
45 1 5.0645 -2.4848 -0.6176
46 1 5.2094 -2.1749 1.8384
47 1 3.6375 -2.9868 2.0337
48 1 5.0387 -3.8969 1.4208
49 1 2.9538 -3.3267 -1.6099
50 1 3.7222 -4.5693 -0.5933
51 1 2.3203 -3.6595 0.0200
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001051041866.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:57
Heat of formation + Delta-G solvation = -23.582868 kcal
Electronic energy + Delta-G solvation = -32535.568557 eV
Core-core repulsion = 28435.699148 eV
Total energy + Delta-G solvation = -4099.869410 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.70270 -39.03220 -38.20717 -35.82717 -35.04714 -33.62534 -32.98251 -31.44427
-31.27095 -30.47904 -28.09273 -27.27047 -26.82197 -25.55708 -23.70930 -23.51831
-22.70780 -21.75358 -20.30158 -20.00820 -19.71873 -17.62536 -16.59733 -16.43500
-15.91127 -15.69986 -15.52758 -14.92633 -14.83393 -14.62024 -14.34654 -14.26121
-13.92611 -13.87492 -13.77824 -13.65623 -13.19142 -12.97526 -12.82500 -12.58817
-12.33242 -12.25206 -12.10981 -11.94242 -11.80960 -11.61446 -11.13394 -11.09884
-10.97808 -10.86562 -10.82829 -10.65579 -10.45916 -10.30828 -10.15504 -9.71486
-9.67310 -9.57933 -9.18085 -8.94139 -8.80016 -8.69473 -8.24236 -6.78762
-6.00606 -3.52098 0.86345 1.37817 3.18651 3.22818 3.30299 3.34467
3.66114 4.03107 4.22791 4.26652 4.47987 4.70530 4.83586 5.01240
5.07268 5.15169 5.17799 5.34630 5.43482 5.44725 5.52343 5.53954
5.54342 5.59613 5.67609 5.80402 5.87473 5.89589 5.96154 5.98081
6.02539 6.06280 6.08431 6.10290 6.16674 6.20180 6.26682 6.29100
6.33151 6.46245 6.52954 6.63301 6.69566 6.83633 6.99396 7.05988
7.40664 7.62749 7.80877 8.04758 8.15517 8.21472 8.73116 8.96637
9.56137 10.16950 11.05245
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011691 B = 0.004126 C = 0.003430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2394.404096 B = 6784.566367 C = 8160.889597
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C 0.144 3.856
3 C -0.187 4.187
4 C -0.030 4.030
5 C -0.186 4.186
6 C 0.554 3.446
7 O -0.547 6.547
8 N -0.687 5.687
9 C 0.137 3.863
10 C 0.124 3.876
11 H 0.042 0.958
12 C 0.056 3.944
13 O -0.392 6.392
14 C 0.035 3.965
15 C 0.145 3.855
16 N -0.591 5.591
17 C -0.257 4.257
18 H 0.073 0.927
19 C 0.014 3.986
20 N -0.896 5.896
21 Si 0.887 3.113
22 H -0.276 1.276
23 H -0.286 1.286
24 H -0.286 1.286
25 C 0.195 3.805
26 C -0.052 4.052
27 C -0.124 4.124
28 C -0.136 4.136
29 N -0.488 5.488
30 H 0.078 0.922
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.137 0.863
34 H 0.144 0.856
35 H 0.415 0.585
36 H 0.068 0.932
37 H 0.061 0.939
38 H 0.083 0.917
39 H 0.047 0.953
40 H 0.080 0.920
41 H 0.041 0.959
42 H 0.030 0.970
43 H 0.089 0.911
44 H 0.256 0.744
45 H 0.116 0.884
46 H 0.062 0.938
47 H 0.043 0.957
48 H 0.057 0.943
49 H 0.048 0.952
50 H 0.051 0.949
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.734 -6.248 6.234 10.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.006 3.994
3 C -0.207 4.207
4 C -0.056 4.056
5 C -0.191 4.191
6 C 0.340 3.660
7 O -0.429 6.429
8 N -0.338 5.338
9 C 0.013 3.987
10 C 0.017 3.983
11 H 0.059 0.941
12 C -0.023 4.023
13 O -0.310 6.310
14 C -0.043 4.043
15 C 0.019 3.981
16 N -0.317 5.317
17 C -0.386 4.386
18 H 0.091 0.909
19 C -0.186 4.186
20 N -0.539 5.539
21 Si 0.716 3.284
22 H -0.200 1.200
23 H -0.213 1.213
24 H -0.213 1.213
25 C 0.056 3.944
26 C -0.071 4.071
27 C -0.182 4.182
28 C -0.193 4.193
29 N -0.198 5.198
30 H 0.097 0.903
31 H 0.095 0.905
32 H 0.094 0.906
33 H 0.155 0.845
34 H 0.162 0.838
35 H 0.255 0.745
36 H 0.086 0.914
37 H 0.079 0.921
38 H 0.101 0.899
39 H 0.065 0.935
40 H 0.098 0.902
41 H 0.059 0.941
42 H 0.048 0.952
43 H 0.107 0.893
44 H 0.066 0.934
45 H 0.133 0.867
46 H 0.081 0.919
47 H 0.063 0.937
48 H 0.076 0.924
49 H 0.067 0.933
50 H 0.070 0.930
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -4.800 -7.499 6.347 10.934
hybrid contribution -0.633 1.111 -1.170 1.733
sum -5.433 -6.389 5.178 9.856
Atomic orbital electron populations
1.20733 0.88838 1.03373 1.03141 1.21442 0.97009 0.88401 0.92556
1.21874 0.94671 0.99384 1.04799 1.21918 0.94707 0.97858 0.91093
1.20831 0.95071 0.94584 1.08603 1.17924 0.86108 0.84471 0.77454
1.90657 1.72289 1.28251 1.51679 1.46019 1.07139 1.09774 1.70905
1.21176 0.79723 0.97041 1.00798 1.21451 0.93010 0.92535 0.91304
0.94082 1.22861 0.94337 0.85184 0.99905 1.87805 1.72452 1.33583
1.37201 1.23345 0.98777 0.97843 0.84343 1.21401 0.87420 0.87771
1.01477 1.44090 1.42061 1.24138 1.21440 1.19268 1.04220 0.91277
1.23840 0.90913 1.25157 0.97314 0.95684 1.00474 1.69987 1.37452
1.04003 1.42491 0.86436 0.81011 0.79320 0.81594 1.20041 1.21252
1.21278 1.21393 0.88465 0.94827 0.89683 1.20414 0.98632 0.88705
0.99340 1.21613 1.00504 1.01555 0.94540 1.21720 0.99463 0.97398
1.00733 1.67385 1.09072 1.28707 1.14630 0.90301 0.90459 0.90640
0.84474 0.83798 0.74513 0.91390 0.92070 0.89868 0.93461 0.90217
0.94096 0.95150 0.89293 0.93399 0.86675 0.91850 0.93746 0.92403
0.93277 0.93020 0.92003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.04 10.16 36.00 0.37 -0.68 16
2 C 0.14 2.02 6.78 -82.51 -0.56 1.46 16
3 C -0.19 -2.67 9.72 -39.50 -0.38 -3.06 16
4 C -0.03 -0.48 9.64 -38.87 -0.37 -0.85 16
5 C -0.19 -3.25 5.89 -104.82 -0.62 -3.86 16
6 C 0.55 10.27 7.68 -12.34 -0.09 10.18 16
7 O -0.55 -10.66 11.76 5.31 0.06 -10.59 16
8 N -0.69 -12.66 3.66 -61.25 -0.22 -12.89 16
9 C 0.14 2.43 4.47 -4.04 -0.02 2.41 16
10 C 0.12 2.33 3.24 -67.41 -0.22 2.11 16
11 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
12 C 0.06 0.96 6.29 37.31 0.23 1.19 16
13 O -0.39 -7.39 10.74 -35.23 -0.38 -7.77 16
14 C 0.03 0.65 6.99 37.31 0.26 0.91 16
15 C 0.14 3.17 5.37 -3.49 -0.02 3.15 16
16 N -0.59 -13.09 3.02 -164.23 -0.50 -13.59 16
17 C -0.26 -6.12 6.82 -15.06 -0.10 -6.23 16
18 H 0.07 1.80 5.90 -52.48 -0.31 1.49 16
19 C 0.01 0.35 5.06 -17.43 -0.09 0.26 16
20 N -0.90 -23.22 11.25 55.49 0.62 -22.60 16
21 Si 0.89 20.50 29.57 -169.99 -5.03 15.47 16
22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
25 C 0.20 3.28 5.84 -82.17 -0.48 2.80 16
26 C -0.05 -0.81 2.36 -91.77 -0.22 -1.03 16
27 C -0.12 -1.76 8.74 37.16 0.32 -1.44 16
28 C -0.14 -1.84 8.66 37.16 0.32 -1.52 16
29 N -0.49 -7.72 9.01 -5.42 -0.05 -7.77 16
30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16
32 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16
33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16
34 H 0.14 2.30 6.56 -52.49 -0.34 1.96 16
35 H 0.42 8.02 5.25 -40.82 -0.21 7.81 16
36 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16
37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.09 2.15 6.47 -51.93 -0.34 1.82 16
44 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16
45 H 0.12 2.02 5.83 -51.93 -0.30 1.72 16
46 H 0.06 0.99 6.80 -51.93 -0.35 0.64 16
47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
51 H 0.06 0.82 7.78 -51.93 -0.40 0.42 16
LS Contribution 396.59 15.07 5.98 5.98
Total: -1.00 -27.85 396.59 -9.31 -37.16
By element:
Atomic # 1 Polarization: 18.91 SS G_CDS: -8.14 Total: 10.78 kcal
Atomic # 6 Polarization: 7.48 SS G_CDS: -1.67 Total: 5.82 kcal
Atomic # 7 Polarization: -56.70 SS G_CDS: -0.14 Total: -56.84 kcal
Atomic # 8 Polarization: -18.05 SS G_CDS: -0.32 Total: -18.36 kcal
Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -27.85 -9.31 -37.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001051041866.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.581 kcal
(2) G-P(sol) polarization free energy of solvation -27.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.583 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds