Wall clock time and date at job start Wed Apr 1 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.46118 * 2 1 4 4 C 1.38355 * 119.30673 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28671 * 359.97438 * 4 3 2 6 6 C 1.47836 * 120.55812 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99963 * 174.42635 * 6 5 4 8 8 N 1.34769 * 120.00306 * 354.42579 * 6 5 4 9 9 C 1.46499 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47532 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.67591 * 62.18523 * 10 9 8 12 12 C 1.53301 * 109.68492 * 182.70668 * 10 9 8 13 13 O 1.42961 * 109.22253 * 172.06230 * 12 10 9 14 14 C 1.42958 * 114.16760 * 297.41815 * 13 12 10 15 15 C 1.53300 * 109.22466 * 62.58130 * 14 13 12 16 16 N 1.47159 * 109.68130 * 301.66942 * 10 9 8 17 17 C 1.36933 * 120.97938 * 9.67667 * 16 10 9 18 18 H 1.08005 * 119.99973 * 326.91842 * 17 16 10 19 19 C 1.38814 * 120.00226 * 146.92521 * 17 16 10 20 20 N 1.31623 * 119.99439 * 349.86542 * 19 17 16 21 21 Si 1.86791 * 120.00313 * 169.86526 * 19 17 16 22 22 H 1.48501 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47371 * 120.00055 * 21 19 17 24 24 H 1.48503 * 109.47237 * 240.00279 * 21 19 17 25 25 C 1.39523 * 118.88045 * 0.25441 * 5 4 3 26 26 C 1.50703 * 119.71673 * 179.74517 * 25 5 4 27 27 C 1.53005 * 109.46868 * 83.57232 * 26 25 5 28 28 C 1.53001 * 109.47222 * 203.57167 * 26 25 5 29 29 N 1.31698 * 120.56509 * 359.49626 * 25 5 4 30 30 H 1.09000 * 109.47260 * 90.00565 * 1 2 3 31 31 H 1.09010 * 109.47246 * 210.00344 * 1 2 3 32 32 H 1.08999 * 109.46941 * 329.99820 * 1 2 3 33 33 H 1.08002 * 120.34773 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.86046 * 180.02562 * 4 3 2 35 35 H 0.97002 * 120.00180 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47012 * 60.00245 * 9 8 6 37 37 H 1.08995 * 109.47343 * 300.00593 * 9 8 6 38 38 H 1.09002 * 109.50794 * 291.98788 * 12 10 9 39 39 H 1.08996 * 109.51029 * 52.08504 * 12 10 9 40 40 H 1.09002 * 109.51171 * 182.50792 * 14 13 12 41 41 H 1.09000 * 109.51086 * 302.65780 * 14 13 12 42 42 H 1.08999 * 109.67769 * 67.41735 * 15 14 13 43 43 H 1.08995 * 109.67980 * 187.97617 * 15 14 13 44 44 H 0.97002 * 119.99515 * 179.97438 * 20 19 17 45 45 H 1.09006 * 109.46938 * 323.57598 * 26 25 5 46 46 H 1.08999 * 109.47148 * 300.00002 * 27 26 25 47 47 H 1.08997 * 109.47377 * 59.99950 * 27 26 25 48 48 H 1.08999 * 109.46866 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.46669 * 59.99943 * 28 26 25 50 50 H 1.08998 * 109.46572 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.46957 * 300.00009 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.2712 -1.1690 0.1049 8 7 6.4307 1.0354 -0.1127 9 6 7.8944 0.9734 -0.1121 10 6 8.4648 2.3861 -0.2529 11 1 8.1606 2.9915 0.6009 12 6 9.9949 2.3208 -0.3207 13 8 10.5078 3.6173 -0.6367 14 6 10.0973 4.1141 -1.9128 15 6 8.5725 4.2712 -1.9266 16 7 7.9701 2.9987 -1.4962 17 6 6.9804 2.4020 -2.2307 18 1 6.9095 1.3249 -2.2668 19 6 6.0684 3.1814 -2.9290 20 7 6.0264 4.4819 -2.7305 21 14 4.9008 2.3847 -4.1501 22 1 5.1487 0.9211 -4.1894 23 1 3.4986 2.6387 -3.7323 24 1 5.1273 2.9610 -5.4999 25 6 3.4716 -1.2043 -0.0033 26 6 4.1627 -2.5435 -0.0081 27 6 4.5393 -2.9281 1.4242 28 6 3.2220 -3.6008 -0.5895 29 7 2.1558 -1.1487 0.0011 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6443 2.1381 -0.0004 34 1 4.1275 2.1265 0.0010 35 1 5.9816 1.8912 -0.1947 36 1 8.2324 0.3598 -0.9472 37 1 8.2391 0.5345 0.8241 38 1 10.3886 1.9985 0.6433 39 1 10.2952 1.6117 -1.0921 40 1 10.5648 5.0819 -2.0943 41 1 10.3980 3.4121 -2.6906 42 1 8.2792 5.0664 -1.2413 43 1 8.2375 4.5130 -2.9353 44 1 5.3893 5.0266 -3.2187 45 1 5.0645 -2.4848 -0.6176 46 1 5.2094 -2.1749 1.8384 47 1 3.6375 -2.9868 2.0337 48 1 5.0387 -3.8969 1.4208 49 1 2.9538 -3.3267 -1.6099 50 1 3.7222 -4.5693 -0.5933 51 1 2.3203 -3.6595 0.0200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051041866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:57 Heat of formation + Delta-G solvation = -23.582868 kcal Electronic energy + Delta-G solvation = -32535.568557 eV Core-core repulsion = 28435.699148 eV Total energy + Delta-G solvation = -4099.869410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.70270 -39.03220 -38.20717 -35.82717 -35.04714 -33.62534 -32.98251 -31.44427 -31.27095 -30.47904 -28.09273 -27.27047 -26.82197 -25.55708 -23.70930 -23.51831 -22.70780 -21.75358 -20.30158 -20.00820 -19.71873 -17.62536 -16.59733 -16.43500 -15.91127 -15.69986 -15.52758 -14.92633 -14.83393 -14.62024 -14.34654 -14.26121 -13.92611 -13.87492 -13.77824 -13.65623 -13.19142 -12.97526 -12.82500 -12.58817 -12.33242 -12.25206 -12.10981 -11.94242 -11.80960 -11.61446 -11.13394 -11.09884 -10.97808 -10.86562 -10.82829 -10.65579 -10.45916 -10.30828 -10.15504 -9.71486 -9.67310 -9.57933 -9.18085 -8.94139 -8.80016 -8.69473 -8.24236 -6.78762 -6.00606 -3.52098 0.86345 1.37817 3.18651 3.22818 3.30299 3.34467 3.66114 4.03107 4.22791 4.26652 4.47987 4.70530 4.83586 5.01240 5.07268 5.15169 5.17799 5.34630 5.43482 5.44725 5.52343 5.53954 5.54342 5.59613 5.67609 5.80402 5.87473 5.89589 5.96154 5.98081 6.02539 6.06280 6.08431 6.10290 6.16674 6.20180 6.26682 6.29100 6.33151 6.46245 6.52954 6.63301 6.69566 6.83633 6.99396 7.05988 7.40664 7.62749 7.80877 8.04758 8.15517 8.21472 8.73116 8.96637 9.56137 10.16950 11.05245 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004126 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.404096 B = 6784.566367 C = 8160.889597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.187 4.187 4 C -0.030 4.030 5 C -0.186 4.186 6 C 0.554 3.446 7 O -0.547 6.547 8 N -0.687 5.687 9 C 0.137 3.863 10 C 0.124 3.876 11 H 0.042 0.958 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.257 4.257 18 H 0.073 0.927 19 C 0.014 3.986 20 N -0.896 5.896 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.195 3.805 26 C -0.052 4.052 27 C -0.124 4.124 28 C -0.136 4.136 29 N -0.488 5.488 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.089 0.911 44 H 0.256 0.744 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.043 0.957 48 H 0.057 0.943 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -6.248 6.234 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.207 4.207 4 C -0.056 4.056 5 C -0.191 4.191 6 C 0.340 3.660 7 O -0.429 6.429 8 N -0.338 5.338 9 C 0.013 3.987 10 C 0.017 3.983 11 H 0.059 0.941 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.186 4.186 20 N -0.539 5.539 21 Si 0.716 3.284 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.056 3.944 26 C -0.071 4.071 27 C -0.182 4.182 28 C -0.193 4.193 29 N -0.198 5.198 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.800 -7.499 6.347 10.934 hybrid contribution -0.633 1.111 -1.170 1.733 sum -5.433 -6.389 5.178 9.856 Atomic orbital electron populations 1.20733 0.88838 1.03373 1.03141 1.21442 0.97009 0.88401 0.92556 1.21874 0.94671 0.99384 1.04799 1.21918 0.94707 0.97858 0.91093 1.20831 0.95071 0.94584 1.08603 1.17924 0.86108 0.84471 0.77454 1.90657 1.72289 1.28251 1.51679 1.46019 1.07139 1.09774 1.70905 1.21176 0.79723 0.97041 1.00798 1.21451 0.93010 0.92535 0.91304 0.94082 1.22861 0.94337 0.85184 0.99905 1.87805 1.72452 1.33583 1.37201 1.23345 0.98777 0.97843 0.84343 1.21401 0.87420 0.87771 1.01477 1.44090 1.42061 1.24138 1.21440 1.19268 1.04220 0.91277 1.23840 0.90913 1.25157 0.97314 0.95684 1.00474 1.69987 1.37452 1.04003 1.42491 0.86436 0.81011 0.79320 0.81594 1.20041 1.21252 1.21278 1.21393 0.88465 0.94827 0.89683 1.20414 0.98632 0.88705 0.99340 1.21613 1.00504 1.01555 0.94540 1.21720 0.99463 0.97398 1.00733 1.67385 1.09072 1.28707 1.14630 0.90301 0.90459 0.90640 0.84474 0.83798 0.74513 0.91390 0.92070 0.89868 0.93461 0.90217 0.94096 0.95150 0.89293 0.93399 0.86675 0.91850 0.93746 0.92403 0.93277 0.93020 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.16 36.00 0.37 -0.68 16 2 C 0.14 2.02 6.78 -82.51 -0.56 1.46 16 3 C -0.19 -2.67 9.72 -39.50 -0.38 -3.06 16 4 C -0.03 -0.48 9.64 -38.87 -0.37 -0.85 16 5 C -0.19 -3.25 5.89 -104.82 -0.62 -3.86 16 6 C 0.55 10.27 7.68 -12.34 -0.09 10.18 16 7 O -0.55 -10.66 11.76 5.31 0.06 -10.59 16 8 N -0.69 -12.66 3.66 -61.25 -0.22 -12.89 16 9 C 0.14 2.43 4.47 -4.04 -0.02 2.41 16 10 C 0.12 2.33 3.24 -67.41 -0.22 2.11 16 11 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 12 C 0.06 0.96 6.29 37.31 0.23 1.19 16 13 O -0.39 -7.39 10.74 -35.23 -0.38 -7.77 16 14 C 0.03 0.65 6.99 37.31 0.26 0.91 16 15 C 0.14 3.17 5.37 -3.49 -0.02 3.15 16 16 N -0.59 -13.09 3.02 -164.23 -0.50 -13.59 16 17 C -0.26 -6.12 6.82 -15.06 -0.10 -6.23 16 18 H 0.07 1.80 5.90 -52.48 -0.31 1.49 16 19 C 0.01 0.35 5.06 -17.43 -0.09 0.26 16 20 N -0.90 -23.22 11.25 55.49 0.62 -22.60 16 21 Si 0.89 20.50 29.57 -169.99 -5.03 15.47 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.20 3.28 5.84 -82.17 -0.48 2.80 16 26 C -0.05 -0.81 2.36 -91.77 -0.22 -1.03 16 27 C -0.12 -1.76 8.74 37.16 0.32 -1.44 16 28 C -0.14 -1.84 8.66 37.16 0.32 -1.52 16 29 N -0.49 -7.72 9.01 -5.42 -0.05 -7.77 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 2.30 6.56 -52.49 -0.34 1.96 16 35 H 0.42 8.02 5.25 -40.82 -0.21 7.81 16 36 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.15 6.47 -51.93 -0.34 1.82 16 44 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 45 H 0.12 2.02 5.83 -51.93 -0.30 1.72 16 46 H 0.06 0.99 6.80 -51.93 -0.35 0.64 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.82 7.78 -51.93 -0.40 0.42 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -27.85 396.59 -9.31 -37.16 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.14 Total: 10.78 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.67 Total: 5.82 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.14 Total: -56.84 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.32 Total: -18.36 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.85 -9.31 -37.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051041866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.581 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds