Wall clock time and date at job start Wed Apr 1 2020 05:52:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38350 * 119.46118 * 2 1
4 4 C 1.38355 * 119.30673 * 179.97438 * 3 2 1
5 5 C 1.40027 * 118.28671 * 359.97438 * 4 3 2
6 6 C 1.47836 * 120.55812 * 179.97438 * 5 4 3
7 7 O 1.21562 * 119.99963 * 174.42635 * 6 5 4
8 8 N 1.34769 * 120.00306 * 354.42579 * 6 5 4
9 9 C 1.46499 * 120.00381 * 179.97438 * 8 6 5
10 10 C 1.53001 * 109.47532 * 180.02562 * 9 8 6
11 11 H 1.08995 * 109.67591 * 62.18523 * 10 9 8
12 12 C 1.53301 * 109.68492 * 182.70668 * 10 9 8
13 13 O 1.42961 * 109.22253 * 172.06230 * 12 10 9
14 14 C 1.42958 * 114.16760 * 297.41815 * 13 12 10
15 15 C 1.53300 * 109.22466 * 62.58130 * 14 13 12
16 16 N 1.47159 * 109.68130 * 301.66942 * 10 9 8
17 17 C 1.36933 * 120.97938 * 9.67667 * 16 10 9
18 18 H 1.08005 * 119.99973 * 326.91842 * 17 16 10
19 19 C 1.38814 * 120.00226 * 146.92521 * 17 16 10
20 20 N 1.31623 * 119.99439 * 349.86542 * 19 17 16
21 21 Si 1.86791 * 120.00313 * 169.86526 * 19 17 16
22 22 H 1.48501 * 109.47230 * 359.97438 * 21 19 17
23 23 H 1.48495 * 109.47371 * 120.00055 * 21 19 17
24 24 H 1.48503 * 109.47237 * 240.00279 * 21 19 17
25 25 C 1.39523 * 118.88045 * 0.25441 * 5 4 3
26 26 C 1.50703 * 119.71673 * 179.74517 * 25 5 4
27 27 C 1.53005 * 109.46868 * 83.57232 * 26 25 5
28 28 C 1.53001 * 109.47222 * 203.57167 * 26 25 5
29 29 N 1.31698 * 120.56509 * 359.49626 * 25 5 4
30 30 H 1.09000 * 109.47260 * 90.00565 * 1 2 3
31 31 H 1.09010 * 109.47246 * 210.00344 * 1 2 3
32 32 H 1.08999 * 109.46941 * 329.99820 * 1 2 3
33 33 H 1.08002 * 120.34773 * 359.97438 * 3 2 1
34 34 H 1.08001 * 120.86046 * 180.02562 * 4 3 2
35 35 H 0.97002 * 120.00180 * 0.02562 * 8 6 5
36 36 H 1.09001 * 109.47012 * 60.00245 * 9 8 6
37 37 H 1.08995 * 109.47343 * 300.00593 * 9 8 6
38 38 H 1.09002 * 109.50794 * 291.98788 * 12 10 9
39 39 H 1.08996 * 109.51029 * 52.08504 * 12 10 9
40 40 H 1.09002 * 109.51171 * 182.50792 * 14 13 12
41 41 H 1.09000 * 109.51086 * 302.65780 * 14 13 12
42 42 H 1.08999 * 109.67769 * 67.41735 * 15 14 13
43 43 H 1.08995 * 109.67980 * 187.97617 * 15 14 13
44 44 H 0.97002 * 119.99515 * 179.97438 * 20 19 17
45 45 H 1.09006 * 109.46938 * 323.57598 * 26 25 5
46 46 H 1.08999 * 109.47148 * 300.00002 * 27 26 25
47 47 H 1.08997 * 109.47377 * 59.99950 * 27 26 25
48 48 H 1.08999 * 109.46866 * 179.97438 * 27 26 25
49 49 H 1.09002 * 109.46669 * 59.99943 * 28 26 25
50 50 H 1.08998 * 109.46572 * 179.97438 * 28 26 25
51 51 H 1.08997 * 109.46957 * 300.00009 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1874 1.2046 0.0000
4 6 3.5710 1.2009 0.0005
5 6 4.2312 -0.0340 0.0016
6 6 5.7083 -0.0966 0.0017
7 8 6.2712 -1.1690 0.1049
8 7 6.4307 1.0354 -0.1127
9 6 7.8944 0.9734 -0.1121
10 6 8.4648 2.3861 -0.2529
11 1 8.1606 2.9915 0.6009
12 6 9.9949 2.3208 -0.3207
13 8 10.5078 3.6173 -0.6367
14 6 10.0973 4.1141 -1.9128
15 6 8.5725 4.2712 -1.9266
16 7 7.9701 2.9987 -1.4962
17 6 6.9804 2.4020 -2.2307
18 1 6.9095 1.3249 -2.2668
19 6 6.0684 3.1814 -2.9290
20 7 6.0264 4.4819 -2.7305
21 14 4.9008 2.3847 -4.1501
22 1 5.1487 0.9211 -4.1894
23 1 3.4986 2.6387 -3.7323
24 1 5.1273 2.9610 -5.4999
25 6 3.4716 -1.2043 -0.0033
26 6 4.1627 -2.5435 -0.0081
27 6 4.5393 -2.9281 1.4242
28 6 3.2220 -3.6008 -0.5895
29 7 2.1558 -1.1487 0.0011
30 1 -0.3634 -0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5139
32 1 -0.3633 0.8900 0.5139
33 1 1.6443 2.1381 -0.0004
34 1 4.1275 2.1265 0.0010
35 1 5.9816 1.8912 -0.1947
36 1 8.2324 0.3598 -0.9472
37 1 8.2391 0.5345 0.8241
38 1 10.3886 1.9985 0.6433
39 1 10.2952 1.6117 -1.0921
40 1 10.5648 5.0819 -2.0943
41 1 10.3980 3.4121 -2.6906
42 1 8.2792 5.0664 -1.2413
43 1 8.2375 4.5130 -2.9353
44 1 5.3893 5.0266 -3.2187
45 1 5.0645 -2.4848 -0.6176
46 1 5.2094 -2.1749 1.8384
47 1 3.6375 -2.9868 2.0337
48 1 5.0387 -3.8969 1.4208
49 1 2.9538 -3.3267 -1.6099
50 1 3.7222 -4.5693 -0.5933
51 1 2.3203 -3.6595 0.0200
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001051041866.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:56
Heat of formation + Delta-G solvation = -39.105437 kcal
Electronic energy + Delta-G solvation = -32536.241667 eV
Core-core repulsion = 28435.699148 eV
Total energy + Delta-G solvation = -4100.542519 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.96078 -40.49579 -39.66613 -37.20923 -36.43013 -35.23039 -34.27822 -33.07827
-32.37961 -32.08154 -29.27068 -28.90952 -27.94756 -26.96961 -25.27752 -24.92016
-23.92298 -23.26990 -21.60544 -21.34148 -21.30798 -19.14553 -18.13542 -17.83049
-17.53307 -17.05355 -16.78437 -16.29782 -16.29262 -16.20274 -15.82758 -15.64765
-15.29768 -15.26233 -15.09203 -14.91853 -14.81893 -14.44329 -14.12072 -13.71422
-13.57849 -13.48290 -13.20851 -13.11185 -13.03214 -12.95274 -12.86500 -12.80050
-12.52271 -12.23313 -12.18835 -12.02688 -12.01319 -11.93497 -11.83367 -11.30023
-10.93755 -10.85196 -10.71178 -10.60807 -10.31962 -10.01184 -9.67089 -8.61585
-7.91527 -5.43368 -0.36627 0.16232 1.31695 1.39939 1.45418 1.86633
2.25244 2.40048 2.76585 3.03035 3.12422 3.24417 3.42636 3.57575
3.67507 3.76792 3.99375 4.02678 4.20159 4.22723 4.29708 4.32660
4.33801 4.39010 4.47423 4.60425 4.63450 4.65684 4.68690 4.75523
4.76774 4.78536 4.83909 4.90981 4.97863 4.99267 5.01425 5.10263
5.10801 5.16582 5.21070 5.28817 5.35073 5.48406 5.58065 5.63031
5.67281 5.69072 6.29149 6.35795 6.63458 6.88996 7.08039 7.26477
7.72508 8.30307 9.12452
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011691 B = 0.004126 C = 0.003430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2394.404096 B = 6784.566367 C = 8160.889597
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C 0.143 3.857
3 C -0.188 4.188
4 C -0.040 4.040
5 C -0.211 4.211
6 C 0.552 3.448
7 O -0.561 6.561
8 N -0.691 5.691
9 C 0.143 3.857
10 C 0.125 3.875
11 H 0.038 0.962
12 C 0.058 3.942
13 O -0.397 6.397
14 C 0.046 3.954
15 C 0.150 3.850
16 N -0.605 5.605
17 C -0.239 4.239
18 H 0.064 0.936
19 C -0.020 4.020
20 N -0.919 5.919
21 Si 0.929 3.071
22 H -0.286 1.286
23 H -0.284 1.284
24 H -0.292 1.292
25 C 0.185 3.815
26 C -0.054 4.054
27 C -0.115 4.115
28 C -0.127 4.127
29 N -0.497 5.497
30 H 0.089 0.911
31 H 0.083 0.917
32 H 0.100 0.900
33 H 0.165 0.835
34 H 0.139 0.861
35 H 0.410 0.590
36 H 0.053 0.947
37 H 0.084 0.916
38 H 0.118 0.882
39 H 0.049 0.951
40 H 0.104 0.896
41 H 0.043 0.957
42 H 0.009 0.991
43 H 0.063 0.937
44 H 0.252 0.748
45 H 0.092 0.908
46 H 0.043 0.957
47 H 0.052 0.948
48 H 0.072 0.928
49 H 0.039 0.961
50 H 0.069 0.931
51 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.404 -6.974 7.066 11.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.005 3.995
3 C -0.208 4.208
4 C -0.066 4.066
5 C -0.216 4.216
6 C 0.340 3.660
7 O -0.443 6.443
8 N -0.341 5.341
9 C 0.019 3.981
10 C 0.019 3.981
11 H 0.055 0.945
12 C -0.021 4.021
13 O -0.315 6.315
14 C -0.032 4.032
15 C 0.025 3.975
16 N -0.331 5.331
17 C -0.369 4.369
18 H 0.082 0.918
19 C -0.218 4.218
20 N -0.565 5.565
21 Si 0.759 3.241
22 H -0.211 1.211
23 H -0.211 1.211
24 H -0.219 1.219
25 C 0.046 3.954
26 C -0.073 4.073
27 C -0.173 4.173
28 C -0.184 4.184
29 N -0.207 5.207
30 H 0.108 0.892
31 H 0.102 0.898
32 H 0.119 0.881
33 H 0.183 0.817
34 H 0.156 0.844
35 H 0.249 0.751
36 H 0.071 0.929
37 H 0.102 0.898
38 H 0.136 0.864
39 H 0.068 0.932
40 H 0.122 0.878
41 H 0.061 0.939
42 H 0.027 0.973
43 H 0.081 0.919
44 H 0.061 0.939
45 H 0.109 0.891
46 H 0.063 0.937
47 H 0.071 0.929
48 H 0.091 0.909
49 H 0.058 0.942
50 H 0.088 0.912
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -5.453 -8.240 7.190 12.220
hybrid contribution -0.456 1.311 -1.387 1.962
sum -5.909 -6.929 5.803 10.798
Atomic orbital electron populations
1.20865 0.85641 1.05011 1.04248 1.22173 0.99045 0.87777 0.90505
1.22225 0.93920 1.00850 1.03782 1.21994 0.95825 0.97213 0.91581
1.20836 0.94438 0.95570 1.10755 1.18143 0.86787 0.84140 0.76954
1.90641 1.72779 1.28547 1.52322 1.46023 1.07403 1.09548 1.71164
1.21153 0.79465 0.96214 1.01287 1.21575 0.94448 0.92560 0.89505
0.94478 1.22983 0.92632 0.84585 1.01859 1.87809 1.72287 1.34390
1.37048 1.23213 0.96101 0.99294 0.84578 1.21232 0.89828 0.87160
0.99310 1.44280 1.41925 1.24160 1.22698 1.19223 1.03897 0.90779
1.23044 0.91809 1.25484 0.98504 0.95921 1.01842 1.70073 1.38237
1.04617 1.43544 0.85801 0.80215 0.77879 0.80229 1.21136 1.21053
1.21894 1.21600 0.89077 0.95021 0.89696 1.20391 0.98059 0.89056
0.99792 1.21528 1.00508 1.01616 0.93659 1.21649 0.99286 0.97525
0.99962 1.67477 1.08464 1.29617 1.15095 0.89207 0.89788 0.88105
0.81713 0.84358 0.75139 0.92887 0.89813 0.86398 0.93225 0.87768
0.93857 0.97281 0.91902 0.93871 0.89058 0.93745 0.92934 0.90905
0.94221 0.91232 0.91575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.71 10.16 71.23 0.72 -0.98 16
2 C 0.14 3.75 6.78 42.57 0.29 4.04 16
3 C -0.19 -5.09 9.72 22.32 0.22 -4.87 16
4 C -0.04 -1.29 9.64 22.73 0.22 -1.08 16
5 C -0.21 -7.46 5.89 -19.99 -0.12 -7.58 16
6 C 0.55 20.88 7.68 86.79 0.67 21.55 16
7 O -0.56 -22.21 11.76 -3.91 -0.05 -22.25 16
8 N -0.69 -25.83 3.66 -465.99 -1.71 -27.54 16
9 C 0.14 5.01 4.47 86.38 0.39 5.40 16
10 C 0.13 4.61 3.24 44.97 0.15 4.76 16
11 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
12 C 0.06 1.85 6.29 72.08 0.45 2.30 16
13 O -0.40 -14.14 10.74 -148.98 -1.60 -15.74 16
14 C 0.05 1.65 6.99 72.08 0.50 2.16 16
15 C 0.15 6.63 5.37 86.34 0.46 7.09 16
16 N -0.60 -26.87 3.02 -673.51 -2.03 -28.90 16
17 C -0.24 -11.56 6.82 84.03 0.57 -10.99 16
18 H 0.06 3.21 5.90 -2.91 -0.02 3.19 16
19 C -0.02 -1.01 5.06 84.86 0.43 -0.58 16
20 N -0.92 -48.56 11.25 21.65 0.24 -48.32 16
21 Si 0.93 42.76 29.57 68.60 2.03 44.79 16
22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16
25 C 0.18 6.18 5.84 42.89 0.25 6.43 16
26 C -0.05 -1.67 2.36 -11.54 -0.03 -1.70 16
27 C -0.12 -3.20 8.74 71.98 0.63 -2.57 16
28 C -0.13 -3.31 8.66 71.98 0.62 -2.68 16
29 N -0.50 -15.14 9.01 -171.06 -1.54 -16.68 16
30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16
32 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16
33 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16
34 H 0.14 4.54 6.56 -2.91 -0.02 4.52 16
35 H 0.41 16.22 5.25 -92.71 -0.49 15.73 16
36 H 0.05 2.03 7.68 -2.39 -0.02 2.01 16
37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16
38 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16
39 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16
40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16
41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
43 H 0.06 3.10 6.47 -2.39 -0.02 3.08 16
44 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16
45 H 0.09 3.27 5.83 -2.38 -0.01 3.26 16
46 H 0.04 1.39 6.80 -2.39 -0.02 1.37 16
47 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
49 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16
50 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
51 H 0.07 1.66 7.78 -2.39 -0.02 1.64 16
Total: -1.00 -60.37 396.59 2.22 -58.15
By element:
Atomic # 1 Polarization: 35.35 SS G_CDS: 0.45 Total: 35.80 kcal
Atomic # 6 Polarization: 14.28 SS G_CDS: 6.43 Total: 20.70 kcal
Atomic # 7 Polarization: -116.40 SS G_CDS: -5.04 Total: -121.44 kcal
Atomic # 8 Polarization: -36.35 SS G_CDS: -1.65 Total: -37.99 kcal
Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal
Total: -60.37 2.22 -58.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001051041866.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.041 kcal
(2) G-P(sol) polarization free energy of solvation -60.366 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds