Wall clock time and date at job start Wed Apr 1 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.46118 * 2 1 4 4 C 1.38355 * 119.30673 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28671 * 359.97438 * 4 3 2 6 6 C 1.47836 * 120.55812 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99963 * 174.42635 * 6 5 4 8 8 N 1.34769 * 120.00306 * 354.42579 * 6 5 4 9 9 C 1.46499 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47532 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.67591 * 62.18523 * 10 9 8 12 12 C 1.53301 * 109.68492 * 182.70668 * 10 9 8 13 13 O 1.42961 * 109.22253 * 172.06230 * 12 10 9 14 14 C 1.42958 * 114.16760 * 297.41815 * 13 12 10 15 15 C 1.53300 * 109.22466 * 62.58130 * 14 13 12 16 16 N 1.47159 * 109.68130 * 301.66942 * 10 9 8 17 17 C 1.36933 * 120.97938 * 9.67667 * 16 10 9 18 18 H 1.08005 * 119.99973 * 326.91842 * 17 16 10 19 19 C 1.38814 * 120.00226 * 146.92521 * 17 16 10 20 20 N 1.31623 * 119.99439 * 349.86542 * 19 17 16 21 21 Si 1.86791 * 120.00313 * 169.86526 * 19 17 16 22 22 H 1.48501 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47371 * 120.00055 * 21 19 17 24 24 H 1.48503 * 109.47237 * 240.00279 * 21 19 17 25 25 C 1.39523 * 118.88045 * 0.25441 * 5 4 3 26 26 C 1.50703 * 119.71673 * 179.74517 * 25 5 4 27 27 C 1.53005 * 109.46868 * 83.57232 * 26 25 5 28 28 C 1.53001 * 109.47222 * 203.57167 * 26 25 5 29 29 N 1.31698 * 120.56509 * 359.49626 * 25 5 4 30 30 H 1.09000 * 109.47260 * 90.00565 * 1 2 3 31 31 H 1.09010 * 109.47246 * 210.00344 * 1 2 3 32 32 H 1.08999 * 109.46941 * 329.99820 * 1 2 3 33 33 H 1.08002 * 120.34773 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.86046 * 180.02562 * 4 3 2 35 35 H 0.97002 * 120.00180 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47012 * 60.00245 * 9 8 6 37 37 H 1.08995 * 109.47343 * 300.00593 * 9 8 6 38 38 H 1.09002 * 109.50794 * 291.98788 * 12 10 9 39 39 H 1.08996 * 109.51029 * 52.08504 * 12 10 9 40 40 H 1.09002 * 109.51171 * 182.50792 * 14 13 12 41 41 H 1.09000 * 109.51086 * 302.65780 * 14 13 12 42 42 H 1.08999 * 109.67769 * 67.41735 * 15 14 13 43 43 H 1.08995 * 109.67980 * 187.97617 * 15 14 13 44 44 H 0.97002 * 119.99515 * 179.97438 * 20 19 17 45 45 H 1.09006 * 109.46938 * 323.57598 * 26 25 5 46 46 H 1.08999 * 109.47148 * 300.00002 * 27 26 25 47 47 H 1.08997 * 109.47377 * 59.99950 * 27 26 25 48 48 H 1.08999 * 109.46866 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.46669 * 59.99943 * 28 26 25 50 50 H 1.08998 * 109.46572 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.46957 * 300.00009 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.2712 -1.1690 0.1049 8 7 6.4307 1.0354 -0.1127 9 6 7.8944 0.9734 -0.1121 10 6 8.4648 2.3861 -0.2529 11 1 8.1606 2.9915 0.6009 12 6 9.9949 2.3208 -0.3207 13 8 10.5078 3.6173 -0.6367 14 6 10.0973 4.1141 -1.9128 15 6 8.5725 4.2712 -1.9266 16 7 7.9701 2.9987 -1.4962 17 6 6.9804 2.4020 -2.2307 18 1 6.9095 1.3249 -2.2668 19 6 6.0684 3.1814 -2.9290 20 7 6.0264 4.4819 -2.7305 21 14 4.9008 2.3847 -4.1501 22 1 5.1487 0.9211 -4.1894 23 1 3.4986 2.6387 -3.7323 24 1 5.1273 2.9610 -5.4999 25 6 3.4716 -1.2043 -0.0033 26 6 4.1627 -2.5435 -0.0081 27 6 4.5393 -2.9281 1.4242 28 6 3.2220 -3.6008 -0.5895 29 7 2.1558 -1.1487 0.0011 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6443 2.1381 -0.0004 34 1 4.1275 2.1265 0.0010 35 1 5.9816 1.8912 -0.1947 36 1 8.2324 0.3598 -0.9472 37 1 8.2391 0.5345 0.8241 38 1 10.3886 1.9985 0.6433 39 1 10.2952 1.6117 -1.0921 40 1 10.5648 5.0819 -2.0943 41 1 10.3980 3.4121 -2.6906 42 1 8.2792 5.0664 -1.2413 43 1 8.2375 4.5130 -2.9353 44 1 5.3893 5.0266 -3.2187 45 1 5.0645 -2.4848 -0.6176 46 1 5.2094 -2.1749 1.8384 47 1 3.6375 -2.9868 2.0337 48 1 5.0387 -3.8969 1.4208 49 1 2.9538 -3.3267 -1.6099 50 1 3.7222 -4.5693 -0.5933 51 1 2.3203 -3.6595 0.0200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051041866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:56 Heat of formation + Delta-G solvation = -39.105437 kcal Electronic energy + Delta-G solvation = -32536.241667 eV Core-core repulsion = 28435.699148 eV Total energy + Delta-G solvation = -4100.542519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96078 -40.49579 -39.66613 -37.20923 -36.43013 -35.23039 -34.27822 -33.07827 -32.37961 -32.08154 -29.27068 -28.90952 -27.94756 -26.96961 -25.27752 -24.92016 -23.92298 -23.26990 -21.60544 -21.34148 -21.30798 -19.14553 -18.13542 -17.83049 -17.53307 -17.05355 -16.78437 -16.29782 -16.29262 -16.20274 -15.82758 -15.64765 -15.29768 -15.26233 -15.09203 -14.91853 -14.81893 -14.44329 -14.12072 -13.71422 -13.57849 -13.48290 -13.20851 -13.11185 -13.03214 -12.95274 -12.86500 -12.80050 -12.52271 -12.23313 -12.18835 -12.02688 -12.01319 -11.93497 -11.83367 -11.30023 -10.93755 -10.85196 -10.71178 -10.60807 -10.31962 -10.01184 -9.67089 -8.61585 -7.91527 -5.43368 -0.36627 0.16232 1.31695 1.39939 1.45418 1.86633 2.25244 2.40048 2.76585 3.03035 3.12422 3.24417 3.42636 3.57575 3.67507 3.76792 3.99375 4.02678 4.20159 4.22723 4.29708 4.32660 4.33801 4.39010 4.47423 4.60425 4.63450 4.65684 4.68690 4.75523 4.76774 4.78536 4.83909 4.90981 4.97863 4.99267 5.01425 5.10263 5.10801 5.16582 5.21070 5.28817 5.35073 5.48406 5.58065 5.63031 5.67281 5.69072 6.29149 6.35795 6.63458 6.88996 7.08039 7.26477 7.72508 8.30307 9.12452 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004126 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.404096 B = 6784.566367 C = 8160.889597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.143 3.857 3 C -0.188 4.188 4 C -0.040 4.040 5 C -0.211 4.211 6 C 0.552 3.448 7 O -0.561 6.561 8 N -0.691 5.691 9 C 0.143 3.857 10 C 0.125 3.875 11 H 0.038 0.962 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.150 3.850 16 N -0.605 5.605 17 C -0.239 4.239 18 H 0.064 0.936 19 C -0.020 4.020 20 N -0.919 5.919 21 Si 0.929 3.071 22 H -0.286 1.286 23 H -0.284 1.284 24 H -0.292 1.292 25 C 0.185 3.815 26 C -0.054 4.054 27 C -0.115 4.115 28 C -0.127 4.127 29 N -0.497 5.497 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.410 0.590 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.009 0.991 43 H 0.063 0.937 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.039 0.961 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 -6.974 7.066 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.005 3.995 3 C -0.208 4.208 4 C -0.066 4.066 5 C -0.216 4.216 6 C 0.340 3.660 7 O -0.443 6.443 8 N -0.341 5.341 9 C 0.019 3.981 10 C 0.019 3.981 11 H 0.055 0.945 12 C -0.021 4.021 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.025 3.975 16 N -0.331 5.331 17 C -0.369 4.369 18 H 0.082 0.918 19 C -0.218 4.218 20 N -0.565 5.565 21 Si 0.759 3.241 22 H -0.211 1.211 23 H -0.211 1.211 24 H -0.219 1.219 25 C 0.046 3.954 26 C -0.073 4.073 27 C -0.173 4.173 28 C -0.184 4.184 29 N -0.207 5.207 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.453 -8.240 7.190 12.220 hybrid contribution -0.456 1.311 -1.387 1.962 sum -5.909 -6.929 5.803 10.798 Atomic orbital electron populations 1.20865 0.85641 1.05011 1.04248 1.22173 0.99045 0.87777 0.90505 1.22225 0.93920 1.00850 1.03782 1.21994 0.95825 0.97213 0.91581 1.20836 0.94438 0.95570 1.10755 1.18143 0.86787 0.84140 0.76954 1.90641 1.72779 1.28547 1.52322 1.46023 1.07403 1.09548 1.71164 1.21153 0.79465 0.96214 1.01287 1.21575 0.94448 0.92560 0.89505 0.94478 1.22983 0.92632 0.84585 1.01859 1.87809 1.72287 1.34390 1.37048 1.23213 0.96101 0.99294 0.84578 1.21232 0.89828 0.87160 0.99310 1.44280 1.41925 1.24160 1.22698 1.19223 1.03897 0.90779 1.23044 0.91809 1.25484 0.98504 0.95921 1.01842 1.70073 1.38237 1.04617 1.43544 0.85801 0.80215 0.77879 0.80229 1.21136 1.21053 1.21894 1.21600 0.89077 0.95021 0.89696 1.20391 0.98059 0.89056 0.99792 1.21528 1.00508 1.01616 0.93659 1.21649 0.99286 0.97525 0.99962 1.67477 1.08464 1.29617 1.15095 0.89207 0.89788 0.88105 0.81713 0.84358 0.75139 0.92887 0.89813 0.86398 0.93225 0.87768 0.93857 0.97281 0.91902 0.93871 0.89058 0.93745 0.92934 0.90905 0.94221 0.91232 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 10.16 71.23 0.72 -0.98 16 2 C 0.14 3.75 6.78 42.57 0.29 4.04 16 3 C -0.19 -5.09 9.72 22.32 0.22 -4.87 16 4 C -0.04 -1.29 9.64 22.73 0.22 -1.08 16 5 C -0.21 -7.46 5.89 -19.99 -0.12 -7.58 16 6 C 0.55 20.88 7.68 86.79 0.67 21.55 16 7 O -0.56 -22.21 11.76 -3.91 -0.05 -22.25 16 8 N -0.69 -25.83 3.66 -465.99 -1.71 -27.54 16 9 C 0.14 5.01 4.47 86.38 0.39 5.40 16 10 C 0.13 4.61 3.24 44.97 0.15 4.76 16 11 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 12 C 0.06 1.85 6.29 72.08 0.45 2.30 16 13 O -0.40 -14.14 10.74 -148.98 -1.60 -15.74 16 14 C 0.05 1.65 6.99 72.08 0.50 2.16 16 15 C 0.15 6.63 5.37 86.34 0.46 7.09 16 16 N -0.60 -26.87 3.02 -673.51 -2.03 -28.90 16 17 C -0.24 -11.56 6.82 84.03 0.57 -10.99 16 18 H 0.06 3.21 5.90 -2.91 -0.02 3.19 16 19 C -0.02 -1.01 5.06 84.86 0.43 -0.58 16 20 N -0.92 -48.56 11.25 21.65 0.24 -48.32 16 21 Si 0.93 42.76 29.57 68.60 2.03 44.79 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 C 0.18 6.18 5.84 42.89 0.25 6.43 16 26 C -0.05 -1.67 2.36 -11.54 -0.03 -1.70 16 27 C -0.12 -3.20 8.74 71.98 0.63 -2.57 16 28 C -0.13 -3.31 8.66 71.98 0.62 -2.68 16 29 N -0.50 -15.14 9.01 -171.06 -1.54 -16.68 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.14 4.54 6.56 -2.91 -0.02 4.52 16 35 H 0.41 16.22 5.25 -92.71 -0.49 15.73 16 36 H 0.05 2.03 7.68 -2.39 -0.02 2.01 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 3.10 6.47 -2.39 -0.02 3.08 16 44 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 45 H 0.09 3.27 5.83 -2.38 -0.01 3.26 16 46 H 0.04 1.39 6.80 -2.39 -0.02 1.37 16 47 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.07 1.66 7.78 -2.39 -0.02 1.64 16 Total: -1.00 -60.37 396.59 2.22 -58.15 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.45 Total: 35.80 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.43 Total: 20.70 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.04 Total: -121.44 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.65 Total: -37.99 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -60.37 2.22 -58.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051041866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.041 kcal (2) G-P(sol) polarization free energy of solvation -60.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds