Wall clock time and date at job start Wed Apr 1 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31700 * 119.71785 * 2 1 4 4 C 1.31919 * 121.88432 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.46118 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47033 * 95.00296 * 5 4 3 7 7 C 1.53008 * 109.47301 * 214.99965 * 5 4 3 8 8 C 1.38359 * 121.07876 * 359.97438 * 4 3 2 9 9 C 1.38356 * 119.30053 * 0.02562 * 8 4 3 10 10 C 1.39514 * 119.71805 * 179.72344 * 2 1 3 11 11 C 1.47837 * 120.56198 * 359.97438 * 10 2 1 12 12 O 1.21557 * 119.99409 * 6.14260 * 11 10 2 13 13 N 1.34777 * 120.00583 * 186.14612 * 11 10 2 14 14 C 1.46492 * 120.00206 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47264 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.67412 * 300.07888 * 15 14 13 17 17 C 1.53296 * 109.68184 * 179.52284 * 15 14 13 18 18 O 1.42959 * 109.21956 * 187.97078 * 17 15 14 19 19 C 1.42958 * 114.16827 * 62.58340 * 18 17 15 20 20 C 1.53298 * 109.22141 * 297.41797 * 19 18 17 21 21 N 1.47148 * 108.38398 * 52.30181 * 20 19 18 22 22 C 1.36936 * 120.98527 * 129.48712 * 21 20 19 23 23 H 1.07990 * 120.00311 * 211.77200 * 22 21 20 24 24 C 1.38819 * 119.99613 * 31.77401 * 22 21 20 25 25 N 1.31619 * 120.00136 * 10.05397 * 24 22 21 26 26 Si 1.86803 * 119.99735 * 190.05272 * 24 22 21 27 27 H 1.48499 * 109.47186 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46777 * 119.99967 * 26 24 22 29 29 H 1.48495 * 109.47357 * 239.99786 * 26 24 22 30 30 H 1.08996 * 109.47017 * 96.93558 * 1 2 3 31 31 H 1.09003 * 109.46771 * 336.93217 * 1 2 3 32 32 H 1.09003 * 109.46812 * 216.93423 * 1 2 3 33 33 H 1.08994 * 109.47366 * 335.00206 * 5 4 3 34 34 H 1.09000 * 109.46666 * 179.97438 * 6 5 4 35 35 H 1.08992 * 109.46629 * 300.00010 * 6 5 4 36 36 H 1.09001 * 109.46768 * 59.99835 * 6 5 4 37 37 H 1.09000 * 109.46809 * 59.99979 * 7 5 4 38 38 H 1.08992 * 109.47285 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.46911 * 300.00044 * 7 5 4 40 40 H 1.08001 * 120.35065 * 180.02562 * 8 4 3 41 41 H 1.07997 * 120.85482 * 179.97438 * 9 8 4 42 42 H 0.97002 * 119.99438 * 0.02562 * 13 11 10 43 43 H 1.09005 * 109.47481 * 300.00090 * 14 13 11 44 44 H 1.09004 * 109.47478 * 60.00028 * 14 13 11 45 45 H 1.08990 * 109.51427 * 307.89554 * 17 15 14 46 46 H 1.08998 * 109.51294 * 68.04981 * 17 15 14 47 47 H 1.09000 * 109.51541 * 177.49041 * 19 18 17 48 48 H 1.08998 * 109.55582 * 57.36578 * 19 18 17 49 49 H 1.08998 * 109.68004 * 292.57644 * 20 19 18 50 50 H 1.09004 * 109.71354 * 172.04267 * 20 19 18 51 51 H 0.96999 * 119.99593 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4781 1.1937 0.0005 5 6 4.1692 2.5328 -0.0001 6 6 4.5143 2.9293 1.4369 7 6 5.4535 2.4437 -0.8269 8 6 4.2366 0.0365 0.0016 9 6 3.5988 -1.1912 0.0016 10 6 2.1986 -1.2116 0.0058 11 6 1.4657 -2.4955 0.0126 12 8 0.2553 -2.5049 -0.0995 13 7 2.1394 -3.6555 0.1432 14 6 1.4130 -4.9276 0.1504 15 6 2.4056 -6.0809 0.3108 16 1 3.1145 -6.0727 -0.5172 17 6 1.6493 -7.4141 0.3310 18 8 2.5580 -8.4657 0.6658 19 6 3.1390 -8.3451 1.9664 20 6 3.9716 -7.0595 2.0301 21 7 3.1292 -5.9385 1.5842 22 6 3.0221 -4.7962 2.3318 23 1 2.1022 -4.2307 2.3251 24 6 4.0962 -4.3653 3.0985 25 7 5.2749 -4.9339 2.9583 26 14 3.8686 -2.9785 4.3291 27 1 2.4588 -2.5131 4.2952 28 1 4.1952 -3.4680 5.6925 29 1 4.7706 -1.8523 3.9782 30 1 -0.3633 -0.1241 -1.0201 31 1 -0.3633 0.9455 0.4027 32 1 -0.3633 -0.8215 0.6175 33 1 3.5083 3.2825 -0.4351 34 1 5.0145 3.8978 1.4363 35 1 3.5994 2.9928 2.0258 36 1 5.1751 2.1796 1.8718 37 1 5.2077 2.1612 -1.8506 38 1 5.9535 3.4121 -0.8270 39 1 6.1144 1.6940 -0.3918 40 1 5.3153 0.0911 0.0024 41 1 4.1661 -2.1102 0.0020 42 1 3.1052 -3.6479 0.2331 43 1 0.7070 -4.9383 0.9809 44 1 0.8712 -5.0421 -0.7885 45 1 0.8535 -7.3700 1.0745 46 1 1.2195 -7.6037 -0.6526 47 1 3.7809 -9.2046 2.1596 48 1 2.3492 -8.3048 2.7165 49 1 4.8382 -7.1507 1.3752 50 1 4.3021 -6.8858 3.0542 51 1 6.0255 -4.6325 3.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051119544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:12 Heat of formation + Delta-G solvation = -25.568420 kcal Electronic energy + Delta-G solvation = -32095.743368 eV Core-core repulsion = 27995.787858 eV Total energy + Delta-G solvation = -4099.955510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.68111 -39.11785 -38.28202 -35.82451 -35.34028 -33.81351 -32.84209 -31.55167 -31.23219 -30.45553 -27.83792 -27.29354 -27.06157 -25.59175 -24.27915 -23.51704 -22.34898 -21.82835 -20.65561 -19.90289 -19.65488 -17.67635 -16.79667 -16.54686 -15.93806 -15.71516 -15.55339 -14.96658 -14.90372 -14.63346 -14.46262 -14.23800 -14.12248 -13.89536 -13.70731 -13.47444 -13.08576 -13.03698 -12.98627 -12.74771 -12.62527 -12.31391 -12.03559 -11.95260 -11.75060 -11.54636 -11.31016 -11.28534 -11.11652 -11.05732 -10.96868 -10.80084 -10.46584 -10.29604 -10.13015 -9.71765 -9.69168 -9.63501 -9.22043 -8.97110 -8.81793 -8.70184 -8.28908 -6.79943 -5.98916 -3.49476 0.84406 1.35665 3.18312 3.21903 3.31344 3.35326 3.62587 4.00689 4.11419 4.27483 4.48381 4.59757 4.85407 4.96368 4.97703 5.02610 5.08040 5.12947 5.18893 5.25467 5.45377 5.51885 5.59332 5.61585 5.66208 5.68440 5.76385 5.79211 5.82656 5.89419 5.96451 5.96840 6.03312 6.05639 6.10869 6.11392 6.16965 6.19507 6.27812 6.28705 6.44555 6.47526 6.68780 6.79338 7.01200 7.02394 7.42988 7.63589 7.81592 8.02022 8.12252 8.21847 8.69490 8.98158 9.57928 10.17453 11.07111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003699 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.123942 B = 7568.717880 C = 8726.608302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.187 3.813 3 N -0.493 5.493 4 C 0.155 3.845 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.186 4.186 9 C -0.029 4.029 10 C -0.187 4.187 11 C 0.556 3.444 12 O -0.551 6.551 13 N -0.688 5.688 14 C 0.136 3.864 15 C 0.124 3.876 16 H 0.042 0.958 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.035 3.965 20 C 0.144 3.856 21 N -0.592 5.592 22 C -0.255 4.255 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.898 5.898 26 Si 0.889 3.111 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.287 1.287 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.414 0.586 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.041 0.959 49 H 0.030 0.970 50 H 0.092 0.908 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 8.056 -6.298 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 N -0.203 5.203 4 C 0.017 3.983 5 C -0.066 4.066 6 C -0.200 4.200 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.055 4.055 10 C -0.192 4.192 11 C 0.343 3.657 12 O -0.432 6.432 13 N -0.339 5.339 14 C 0.012 3.988 15 C 0.017 3.983 16 H 0.059 0.941 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.318 5.318 22 C -0.385 4.385 23 H 0.091 0.909 24 C -0.187 4.187 25 N -0.542 5.542 26 Si 0.718 3.282 27 H -0.201 1.201 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.110 0.890 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.928 8.670 -6.401 10.948 hybrid contribution 1.129 0.053 1.115 1.587 sum -0.800 8.722 -5.286 10.230 Atomic orbital electron populations 1.21006 0.87692 1.03530 1.03979 1.21441 0.97370 0.86482 0.89879 1.67406 1.09196 1.28871 1.14801 1.21356 0.89392 0.95279 0.92266 1.20071 0.96395 0.92758 0.97391 1.21812 1.01960 1.01447 0.94803 1.21934 0.96445 1.02346 0.99830 1.21888 1.01696 0.92405 1.04581 1.21906 0.93391 0.99077 0.91150 1.20827 0.94357 0.95289 1.08689 1.17917 0.86928 0.83570 0.77314 1.90662 1.13517 1.87230 1.51792 1.45938 1.12146 1.04881 1.70906 1.21198 0.94505 0.82284 1.00818 1.21443 0.93451 0.92459 0.90920 0.94092 1.22857 0.91486 0.88153 0.99787 1.87804 1.61550 1.46735 1.34970 1.23350 0.96947 1.00306 0.83728 1.21414 0.91185 0.83835 1.01691 1.44098 1.54315 1.14957 1.18394 1.19268 0.96589 1.01117 1.21505 0.90893 1.25124 0.94874 0.98098 1.00613 1.69979 0.99726 1.43140 1.41309 0.86412 0.78023 0.82140 0.81617 1.20089 1.21310 1.21309 0.90226 0.91761 0.87812 0.89228 0.91858 0.92236 0.92290 0.92308 0.91852 0.91904 0.84274 0.83842 0.74729 0.91273 0.92043 0.93450 0.89864 0.90227 0.94100 0.95236 0.88989 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.87 36.01 0.32 -1.29 16 2 C 0.19 3.15 6.82 -82.17 -0.56 2.58 16 3 N -0.49 -7.92 10.17 -5.42 -0.06 -7.97 16 4 C 0.16 2.21 5.79 -82.51 -0.48 1.73 16 5 C -0.05 -0.51 3.23 -91.77 -0.30 -0.81 16 6 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 7 C -0.15 -1.30 8.62 37.16 0.32 -0.98 16 8 C -0.19 -2.64 9.16 -39.49 -0.36 -3.00 16 9 C -0.03 -0.46 9.63 -38.87 -0.37 -0.84 16 10 C -0.19 -3.24 5.89 -104.82 -0.62 -3.86 16 11 C 0.56 10.37 7.71 -12.33 -0.10 10.28 16 12 O -0.55 -10.97 13.37 5.32 0.07 -10.90 16 13 N -0.69 -12.67 3.74 -61.25 -0.23 -12.90 16 14 C 0.14 2.43 4.45 -4.04 -0.02 2.41 16 15 C 0.12 2.34 3.21 -67.42 -0.22 2.12 16 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.06 0.96 6.29 37.31 0.23 1.20 16 18 O -0.39 -7.42 10.74 -35.23 -0.38 -7.80 16 19 C 0.03 0.65 6.98 37.31 0.26 0.91 16 20 C 0.14 3.18 5.37 -3.53 -0.02 3.16 16 21 N -0.59 -13.17 3.03 -164.30 -0.50 -13.67 16 22 C -0.26 -6.13 7.03 -15.06 -0.11 -6.24 16 23 H 0.07 1.81 5.84 -52.49 -0.31 1.51 16 24 C 0.01 0.32 5.07 -17.43 -0.09 0.23 16 25 N -0.90 -23.39 11.14 55.49 0.62 -22.77 16 26 Si 0.89 20.61 29.57 -169.99 -5.03 15.58 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.75 5.86 -51.93 -0.30 1.45 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.54 6.48 -51.93 -0.34 0.20 16 40 H 0.14 1.64 6.29 -52.49 -0.33 1.31 16 41 H 0.14 2.22 6.57 -52.49 -0.34 1.88 16 42 H 0.41 7.90 5.46 -40.82 -0.22 7.67 16 43 H 0.07 1.34 7.56 -51.93 -0.39 0.95 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 2.24 6.35 -51.93 -0.33 1.91 16 51 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -28.32 397.21 -9.31 -37.63 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -8.04 Total: 10.33 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.76 Total: 6.47 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.16 Total: -57.30 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.31 Total: -18.69 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.32 -9.31 -37.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051119544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.058 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds