Wall clock time and date at job start Wed Apr 1 2020 05:53:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31700 * 119.71785 * 2 1
4 4 C 1.31919 * 121.88432 * 179.97438 * 3 2 1
5 5 C 1.50696 * 119.46118 * 179.97438 * 4 3 2
6 6 C 1.53009 * 109.47033 * 95.00296 * 5 4 3
7 7 C 1.53008 * 109.47301 * 214.99965 * 5 4 3
8 8 C 1.38359 * 121.07876 * 359.97438 * 4 3 2
9 9 C 1.38356 * 119.30053 * 0.02562 * 8 4 3
10 10 C 1.39514 * 119.71805 * 179.72344 * 2 1 3
11 11 C 1.47837 * 120.56198 * 359.97438 * 10 2 1
12 12 O 1.21557 * 119.99409 * 6.14260 * 11 10 2
13 13 N 1.34777 * 120.00583 * 186.14612 * 11 10 2
14 14 C 1.46492 * 120.00206 * 179.97438 * 13 11 10
15 15 C 1.53003 * 109.47264 * 180.02562 * 14 13 11
16 16 H 1.09002 * 109.67412 * 300.07888 * 15 14 13
17 17 C 1.53296 * 109.68184 * 179.52284 * 15 14 13
18 18 O 1.42959 * 109.21956 * 187.97078 * 17 15 14
19 19 C 1.42958 * 114.16827 * 62.58340 * 18 17 15
20 20 C 1.53298 * 109.22141 * 297.41797 * 19 18 17
21 21 N 1.47148 * 108.38398 * 52.30181 * 20 19 18
22 22 C 1.36936 * 120.98527 * 129.48712 * 21 20 19
23 23 H 1.07990 * 120.00311 * 211.77200 * 22 21 20
24 24 C 1.38819 * 119.99613 * 31.77401 * 22 21 20
25 25 N 1.31619 * 120.00136 * 10.05397 * 24 22 21
26 26 Si 1.86803 * 119.99735 * 190.05272 * 24 22 21
27 27 H 1.48499 * 109.47186 * 0.02562 * 26 24 22
28 28 H 1.48505 * 109.46777 * 119.99967 * 26 24 22
29 29 H 1.48495 * 109.47357 * 239.99786 * 26 24 22
30 30 H 1.08996 * 109.47017 * 96.93558 * 1 2 3
31 31 H 1.09003 * 109.46771 * 336.93217 * 1 2 3
32 32 H 1.09003 * 109.46812 * 216.93423 * 1 2 3
33 33 H 1.08994 * 109.47366 * 335.00206 * 5 4 3
34 34 H 1.09000 * 109.46666 * 179.97438 * 6 5 4
35 35 H 1.08992 * 109.46629 * 300.00010 * 6 5 4
36 36 H 1.09001 * 109.46768 * 59.99835 * 6 5 4
37 37 H 1.09000 * 109.46809 * 59.99979 * 7 5 4
38 38 H 1.08992 * 109.47285 * 180.02562 * 7 5 4
39 39 H 1.09001 * 109.46911 * 300.00044 * 7 5 4
40 40 H 1.08001 * 120.35065 * 180.02562 * 8 4 3
41 41 H 1.07997 * 120.85482 * 179.97438 * 9 8 4
42 42 H 0.97002 * 119.99438 * 0.02562 * 13 11 10
43 43 H 1.09005 * 109.47481 * 300.00090 * 14 13 11
44 44 H 1.09004 * 109.47478 * 60.00028 * 14 13 11
45 45 H 1.08990 * 109.51427 * 307.89554 * 17 15 14
46 46 H 1.08998 * 109.51294 * 68.04981 * 17 15 14
47 47 H 1.09000 * 109.51541 * 177.49041 * 19 18 17
48 48 H 1.08998 * 109.55582 * 57.36578 * 19 18 17
49 49 H 1.08998 * 109.68004 * 292.57644 * 20 19 18
50 50 H 1.09004 * 109.71354 * 172.04267 * 20 19 18
51 51 H 0.96999 * 119.99593 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1599 1.1438 0.0000
4 6 3.4781 1.1937 0.0005
5 6 4.1692 2.5328 -0.0001
6 6 4.5143 2.9293 1.4369
7 6 5.4535 2.4437 -0.8269
8 6 4.2366 0.0365 0.0016
9 6 3.5988 -1.1912 0.0016
10 6 2.1986 -1.2116 0.0058
11 6 1.4657 -2.4955 0.0126
12 8 0.2553 -2.5049 -0.0995
13 7 2.1394 -3.6555 0.1432
14 6 1.4130 -4.9276 0.1504
15 6 2.4056 -6.0809 0.3108
16 1 3.1145 -6.0727 -0.5172
17 6 1.6493 -7.4141 0.3310
18 8 2.5580 -8.4657 0.6658
19 6 3.1390 -8.3451 1.9664
20 6 3.9716 -7.0595 2.0301
21 7 3.1292 -5.9385 1.5842
22 6 3.0221 -4.7962 2.3318
23 1 2.1022 -4.2307 2.3251
24 6 4.0962 -4.3653 3.0985
25 7 5.2749 -4.9339 2.9583
26 14 3.8686 -2.9785 4.3291
27 1 2.4588 -2.5131 4.2952
28 1 4.1952 -3.4680 5.6925
29 1 4.7706 -1.8523 3.9782
30 1 -0.3633 -0.1241 -1.0201
31 1 -0.3633 0.9455 0.4027
32 1 -0.3633 -0.8215 0.6175
33 1 3.5083 3.2825 -0.4351
34 1 5.0145 3.8978 1.4363
35 1 3.5994 2.9928 2.0258
36 1 5.1751 2.1796 1.8718
37 1 5.2077 2.1612 -1.8506
38 1 5.9535 3.4121 -0.8270
39 1 6.1144 1.6940 -0.3918
40 1 5.3153 0.0911 0.0024
41 1 4.1661 -2.1102 0.0020
42 1 3.1052 -3.6479 0.2331
43 1 0.7070 -4.9383 0.9809
44 1 0.8712 -5.0421 -0.7885
45 1 0.8535 -7.3700 1.0745
46 1 1.2195 -7.6037 -0.6526
47 1 3.7809 -9.2046 2.1596
48 1 2.3492 -8.3048 2.7165
49 1 4.8382 -7.1507 1.3752
50 1 4.3021 -6.8858 3.0542
51 1 6.0255 -4.6325 3.4938
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001051119544.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:53:12
Heat of formation + Delta-G solvation = -25.568420 kcal
Electronic energy + Delta-G solvation = -32095.743368 eV
Core-core repulsion = 27995.787858 eV
Total energy + Delta-G solvation = -4099.955510 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.68111 -39.11785 -38.28202 -35.82451 -35.34028 -33.81351 -32.84209 -31.55167
-31.23219 -30.45553 -27.83792 -27.29354 -27.06157 -25.59175 -24.27915 -23.51704
-22.34898 -21.82835 -20.65561 -19.90289 -19.65488 -17.67635 -16.79667 -16.54686
-15.93806 -15.71516 -15.55339 -14.96658 -14.90372 -14.63346 -14.46262 -14.23800
-14.12248 -13.89536 -13.70731 -13.47444 -13.08576 -13.03698 -12.98627 -12.74771
-12.62527 -12.31391 -12.03559 -11.95260 -11.75060 -11.54636 -11.31016 -11.28534
-11.11652 -11.05732 -10.96868 -10.80084 -10.46584 -10.29604 -10.13015 -9.71765
-9.69168 -9.63501 -9.22043 -8.97110 -8.81793 -8.70184 -8.28908 -6.79943
-5.98916 -3.49476 0.84406 1.35665 3.18312 3.21903 3.31344 3.35326
3.62587 4.00689 4.11419 4.27483 4.48381 4.59757 4.85407 4.96368
4.97703 5.02610 5.08040 5.12947 5.18893 5.25467 5.45377 5.51885
5.59332 5.61585 5.66208 5.68440 5.76385 5.79211 5.82656 5.89419
5.96451 5.96840 6.03312 6.05639 6.10869 6.11392 6.16965 6.19507
6.27812 6.28705 6.44555 6.47526 6.68780 6.79338 7.01200 7.02394
7.42988 7.63589 7.81592 8.02022 8.12252 8.21847 8.69490 8.98158
9.57928 10.17453 11.07111
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012207 B = 0.003699 C = 0.003208
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2293.123942 B = 7568.717880 C = 8726.608302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.187 3.813
3 N -0.493 5.493
4 C 0.155 3.845
5 C -0.047 4.047
6 C -0.142 4.142
7 C -0.148 4.148
8 C -0.186 4.186
9 C -0.029 4.029
10 C -0.187 4.187
11 C 0.556 3.444
12 O -0.551 6.551
13 N -0.688 5.688
14 C 0.136 3.864
15 C 0.124 3.876
16 H 0.042 0.958
17 C 0.056 3.944
18 O -0.392 6.392
19 C 0.035 3.965
20 C 0.144 3.856
21 N -0.592 5.592
22 C -0.255 4.255
23 H 0.074 0.926
24 C 0.013 3.987
25 N -0.898 5.898
26 Si 0.889 3.111
27 H -0.276 1.276
28 H -0.287 1.287
29 H -0.287 1.287
30 H 0.079 0.921
31 H 0.063 0.937
32 H 0.104 0.896
33 H 0.089 0.911
34 H 0.062 0.938
35 H 0.059 0.941
36 H 0.058 0.942
37 H 0.058 0.942
38 H 0.062 0.938
39 H 0.062 0.938
40 H 0.140 0.860
41 H 0.144 0.856
42 H 0.414 0.586
43 H 0.069 0.931
44 H 0.061 0.939
45 H 0.047 0.953
46 H 0.083 0.917
47 H 0.080 0.920
48 H 0.041 0.959
49 H 0.030 0.970
50 H 0.092 0.908
51 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.816 8.056 -6.298 10.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.048 3.952
3 N -0.203 5.203
4 C 0.017 3.983
5 C -0.066 4.066
6 C -0.200 4.200
7 C -0.206 4.206
8 C -0.206 4.206
9 C -0.055 4.055
10 C -0.192 4.192
11 C 0.343 3.657
12 O -0.432 6.432
13 N -0.339 5.339
14 C 0.012 3.988
15 C 0.017 3.983
16 H 0.059 0.941
17 C -0.023 4.023
18 O -0.311 6.311
19 C -0.043 4.043
20 C 0.019 3.981
21 N -0.318 5.318
22 C -0.385 4.385
23 H 0.091 0.909
24 C -0.187 4.187
25 N -0.542 5.542
26 Si 0.718 3.282
27 H -0.201 1.201
28 H -0.213 1.213
29 H -0.213 1.213
30 H 0.098 0.902
31 H 0.082 0.918
32 H 0.122 0.878
33 H 0.108 0.892
34 H 0.081 0.919
35 H 0.078 0.922
36 H 0.077 0.923
37 H 0.077 0.923
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.157 0.843
41 H 0.162 0.838
42 H 0.253 0.747
43 H 0.087 0.913
44 H 0.080 0.920
45 H 0.066 0.934
46 H 0.101 0.899
47 H 0.098 0.902
48 H 0.059 0.941
49 H 0.048 0.952
50 H 0.110 0.890
51 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -1.928 8.670 -6.401 10.948
hybrid contribution 1.129 0.053 1.115 1.587
sum -0.800 8.722 -5.286 10.230
Atomic orbital electron populations
1.21006 0.87692 1.03530 1.03979 1.21441 0.97370 0.86482 0.89879
1.67406 1.09196 1.28871 1.14801 1.21356 0.89392 0.95279 0.92266
1.20071 0.96395 0.92758 0.97391 1.21812 1.01960 1.01447 0.94803
1.21934 0.96445 1.02346 0.99830 1.21888 1.01696 0.92405 1.04581
1.21906 0.93391 0.99077 0.91150 1.20827 0.94357 0.95289 1.08689
1.17917 0.86928 0.83570 0.77314 1.90662 1.13517 1.87230 1.51792
1.45938 1.12146 1.04881 1.70906 1.21198 0.94505 0.82284 1.00818
1.21443 0.93451 0.92459 0.90920 0.94092 1.22857 0.91486 0.88153
0.99787 1.87804 1.61550 1.46735 1.34970 1.23350 0.96947 1.00306
0.83728 1.21414 0.91185 0.83835 1.01691 1.44098 1.54315 1.14957
1.18394 1.19268 0.96589 1.01117 1.21505 0.90893 1.25124 0.94874
0.98098 1.00613 1.69979 0.99726 1.43140 1.41309 0.86412 0.78023
0.82140 0.81617 1.20089 1.21310 1.21309 0.90226 0.91761 0.87812
0.89228 0.91858 0.92236 0.92290 0.92308 0.91852 0.91904 0.84274
0.83842 0.74729 0.91273 0.92043 0.93450 0.89864 0.90227 0.94100
0.95236 0.88989 0.93434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.61 8.87 36.01 0.32 -1.29 16
2 C 0.19 3.15 6.82 -82.17 -0.56 2.58 16
3 N -0.49 -7.92 10.17 -5.42 -0.06 -7.97 16
4 C 0.16 2.21 5.79 -82.51 -0.48 1.73 16
5 C -0.05 -0.51 3.23 -91.77 -0.30 -0.81 16
6 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16
7 C -0.15 -1.30 8.62 37.16 0.32 -0.98 16
8 C -0.19 -2.64 9.16 -39.49 -0.36 -3.00 16
9 C -0.03 -0.46 9.63 -38.87 -0.37 -0.84 16
10 C -0.19 -3.24 5.89 -104.82 -0.62 -3.86 16
11 C 0.56 10.37 7.71 -12.33 -0.10 10.28 16
12 O -0.55 -10.97 13.37 5.32 0.07 -10.90 16
13 N -0.69 -12.67 3.74 -61.25 -0.23 -12.90 16
14 C 0.14 2.43 4.45 -4.04 -0.02 2.41 16
15 C 0.12 2.34 3.21 -67.42 -0.22 2.12 16
16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
17 C 0.06 0.96 6.29 37.31 0.23 1.20 16
18 O -0.39 -7.42 10.74 -35.23 -0.38 -7.80 16
19 C 0.03 0.65 6.98 37.31 0.26 0.91 16
20 C 0.14 3.18 5.37 -3.53 -0.02 3.16 16
21 N -0.59 -13.17 3.03 -164.30 -0.50 -13.67 16
22 C -0.26 -6.13 7.03 -15.06 -0.11 -6.24 16
23 H 0.07 1.81 5.84 -52.49 -0.31 1.51 16
24 C 0.01 0.32 5.07 -17.43 -0.09 0.23 16
25 N -0.90 -23.39 11.14 55.49 0.62 -22.77 16
26 Si 0.89 20.61 29.57 -169.99 -5.03 15.58 16
27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.10 1.75 5.86 -51.93 -0.30 1.45 16
33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
39 H 0.06 0.54 6.48 -51.93 -0.34 0.20 16
40 H 0.14 1.64 6.29 -52.49 -0.33 1.31 16
41 H 0.14 2.22 6.57 -52.49 -0.34 1.88 16
42 H 0.41 7.90 5.46 -40.82 -0.22 7.67 16
43 H 0.07 1.34 7.56 -51.93 -0.39 0.95 16
44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
46 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
47 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
49 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
50 H 0.09 2.24 6.35 -51.93 -0.33 1.91 16
51 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16
LS Contribution 397.21 15.07 5.99 5.99
Total: -1.00 -28.32 397.21 -9.31 -37.63
By element:
Atomic # 1 Polarization: 18.37 SS G_CDS: -8.04 Total: 10.33 kcal
Atomic # 6 Polarization: 8.23 SS G_CDS: -1.76 Total: 6.47 kcal
Atomic # 7 Polarization: -57.14 SS G_CDS: -0.16 Total: -57.30 kcal
Atomic # 8 Polarization: -18.39 SS G_CDS: -0.31 Total: -18.69 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -28.32 -9.31 -37.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001051119544.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.058 kcal
(2) G-P(sol) polarization free energy of solvation -28.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds