Wall clock time and date at job start Wed Apr 1 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31700 * 119.71785 * 2 1 4 4 C 1.31919 * 121.88432 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.46118 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47033 * 95.00296 * 5 4 3 7 7 C 1.53008 * 109.47301 * 214.99965 * 5 4 3 8 8 C 1.38359 * 121.07876 * 359.97438 * 4 3 2 9 9 C 1.38356 * 119.30053 * 0.02562 * 8 4 3 10 10 C 1.39514 * 119.71805 * 179.72344 * 2 1 3 11 11 C 1.47837 * 120.56198 * 359.97438 * 10 2 1 12 12 O 1.21557 * 119.99409 * 6.14260 * 11 10 2 13 13 N 1.34777 * 120.00583 * 186.14612 * 11 10 2 14 14 C 1.46492 * 120.00206 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47264 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.67412 * 300.07888 * 15 14 13 17 17 C 1.53296 * 109.68184 * 179.52284 * 15 14 13 18 18 O 1.42959 * 109.21956 * 187.97078 * 17 15 14 19 19 C 1.42958 * 114.16827 * 62.58340 * 18 17 15 20 20 C 1.53298 * 109.22141 * 297.41797 * 19 18 17 21 21 N 1.47148 * 108.38398 * 52.30181 * 20 19 18 22 22 C 1.36936 * 120.98527 * 129.48712 * 21 20 19 23 23 H 1.07990 * 120.00311 * 211.77200 * 22 21 20 24 24 C 1.38819 * 119.99613 * 31.77401 * 22 21 20 25 25 N 1.31619 * 120.00136 * 10.05397 * 24 22 21 26 26 Si 1.86803 * 119.99735 * 190.05272 * 24 22 21 27 27 H 1.48499 * 109.47186 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46777 * 119.99967 * 26 24 22 29 29 H 1.48495 * 109.47357 * 239.99786 * 26 24 22 30 30 H 1.08996 * 109.47017 * 96.93558 * 1 2 3 31 31 H 1.09003 * 109.46771 * 336.93217 * 1 2 3 32 32 H 1.09003 * 109.46812 * 216.93423 * 1 2 3 33 33 H 1.08994 * 109.47366 * 335.00206 * 5 4 3 34 34 H 1.09000 * 109.46666 * 179.97438 * 6 5 4 35 35 H 1.08992 * 109.46629 * 300.00010 * 6 5 4 36 36 H 1.09001 * 109.46768 * 59.99835 * 6 5 4 37 37 H 1.09000 * 109.46809 * 59.99979 * 7 5 4 38 38 H 1.08992 * 109.47285 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.46911 * 300.00044 * 7 5 4 40 40 H 1.08001 * 120.35065 * 180.02562 * 8 4 3 41 41 H 1.07997 * 120.85482 * 179.97438 * 9 8 4 42 42 H 0.97002 * 119.99438 * 0.02562 * 13 11 10 43 43 H 1.09005 * 109.47481 * 300.00090 * 14 13 11 44 44 H 1.09004 * 109.47478 * 60.00028 * 14 13 11 45 45 H 1.08990 * 109.51427 * 307.89554 * 17 15 14 46 46 H 1.08998 * 109.51294 * 68.04981 * 17 15 14 47 47 H 1.09000 * 109.51541 * 177.49041 * 19 18 17 48 48 H 1.08998 * 109.55582 * 57.36578 * 19 18 17 49 49 H 1.08998 * 109.68004 * 292.57644 * 20 19 18 50 50 H 1.09004 * 109.71354 * 172.04267 * 20 19 18 51 51 H 0.96999 * 119.99593 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4781 1.1937 0.0005 5 6 4.1692 2.5328 -0.0001 6 6 4.5143 2.9293 1.4369 7 6 5.4535 2.4437 -0.8269 8 6 4.2366 0.0365 0.0016 9 6 3.5988 -1.1912 0.0016 10 6 2.1986 -1.2116 0.0058 11 6 1.4657 -2.4955 0.0126 12 8 0.2553 -2.5049 -0.0995 13 7 2.1394 -3.6555 0.1432 14 6 1.4130 -4.9276 0.1504 15 6 2.4056 -6.0809 0.3108 16 1 3.1145 -6.0727 -0.5172 17 6 1.6493 -7.4141 0.3310 18 8 2.5580 -8.4657 0.6658 19 6 3.1390 -8.3451 1.9664 20 6 3.9716 -7.0595 2.0301 21 7 3.1292 -5.9385 1.5842 22 6 3.0221 -4.7962 2.3318 23 1 2.1022 -4.2307 2.3251 24 6 4.0962 -4.3653 3.0985 25 7 5.2749 -4.9339 2.9583 26 14 3.8686 -2.9785 4.3291 27 1 2.4588 -2.5131 4.2952 28 1 4.1952 -3.4680 5.6925 29 1 4.7706 -1.8523 3.9782 30 1 -0.3633 -0.1241 -1.0201 31 1 -0.3633 0.9455 0.4027 32 1 -0.3633 -0.8215 0.6175 33 1 3.5083 3.2825 -0.4351 34 1 5.0145 3.8978 1.4363 35 1 3.5994 2.9928 2.0258 36 1 5.1751 2.1796 1.8718 37 1 5.2077 2.1612 -1.8506 38 1 5.9535 3.4121 -0.8270 39 1 6.1144 1.6940 -0.3918 40 1 5.3153 0.0911 0.0024 41 1 4.1661 -2.1102 0.0020 42 1 3.1052 -3.6479 0.2331 43 1 0.7070 -4.9383 0.9809 44 1 0.8712 -5.0421 -0.7885 45 1 0.8535 -7.3700 1.0745 46 1 1.2195 -7.6037 -0.6526 47 1 3.7809 -9.2046 2.1596 48 1 2.3492 -8.3048 2.7165 49 1 4.8382 -7.1507 1.3752 50 1 4.3021 -6.8858 3.0542 51 1 6.0255 -4.6325 3.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051119544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:10 Heat of formation + Delta-G solvation = -41.755917 kcal Electronic energy + Delta-G solvation = -32096.445310 eV Core-core repulsion = 27995.787858 eV Total energy + Delta-G solvation = -4100.657452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.93766 -40.56501 -39.76088 -37.09826 -36.61127 -35.44712 -34.19903 -33.09738 -32.50127 -32.04198 -29.16498 -28.80087 -27.97071 -26.97104 -25.51077 -25.23081 -23.63140 -23.27563 -21.91692 -21.41984 -20.96514 -19.17779 -18.19680 -18.01454 -17.57239 -17.11556 -16.71318 -16.38746 -16.31728 -16.26200 -15.84520 -15.67817 -15.35008 -15.22410 -15.01043 -14.94475 -14.62438 -14.29713 -14.12014 -14.07118 -13.88018 -13.54156 -13.28565 -13.13842 -12.99933 -12.92812 -12.82801 -12.78691 -12.50205 -12.25208 -12.17791 -12.09881 -12.00645 -11.89854 -11.87970 -11.30615 -10.99065 -10.91292 -10.72032 -10.60195 -10.39530 -10.07750 -9.72122 -8.63195 -7.90668 -5.41454 -0.40393 0.12994 1.32555 1.40623 1.45975 1.82323 2.21736 2.40358 2.72600 3.01820 3.05158 3.25449 3.42753 3.55586 3.64414 3.72455 3.95434 4.01283 4.10639 4.13388 4.22115 4.23287 4.33118 4.47356 4.48541 4.57987 4.62354 4.64106 4.66048 4.67644 4.74180 4.76200 4.77715 4.86181 4.91323 4.98076 5.00705 5.01835 5.10873 5.17662 5.19581 5.29972 5.32365 5.40661 5.54061 5.60462 5.63558 5.67423 6.29160 6.36128 6.59426 6.84847 7.08793 7.21953 7.73716 8.30210 9.13459 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003699 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.123942 B = 7568.717880 C = 8726.608302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.174 3.826 3 N -0.504 5.504 4 C 0.155 3.845 5 C -0.046 4.046 6 C -0.140 4.140 7 C -0.145 4.145 8 C -0.185 4.185 9 C -0.036 4.036 10 C -0.209 4.209 11 C 0.555 3.445 12 O -0.567 6.567 13 N -0.690 5.690 14 C 0.142 3.858 15 C 0.126 3.874 16 H 0.039 0.961 17 C 0.058 3.942 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.605 5.605 22 C -0.239 4.239 23 H 0.065 0.935 24 C -0.022 4.022 25 N -0.921 5.921 26 Si 0.930 3.070 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.410 0.590 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.043 0.957 49 H 0.009 0.991 50 H 0.065 0.935 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 8.787 -7.187 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.036 3.964 3 N -0.214 5.214 4 C 0.017 3.983 5 C -0.065 4.065 6 C -0.198 4.198 7 C -0.202 4.202 8 C -0.204 4.204 9 C -0.062 4.062 10 C -0.214 4.214 11 C 0.343 3.657 12 O -0.450 6.450 13 N -0.340 5.340 14 C 0.018 3.982 15 C 0.020 3.980 16 H 0.057 0.943 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.331 5.331 22 C -0.369 4.369 23 H 0.083 0.917 24 C -0.219 4.219 25 N -0.566 5.566 26 Si 0.760 3.240 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.212 1.212 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.182 0.818 41 H 0.161 0.839 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.136 0.864 47 H 0.122 0.878 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.084 0.916 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.757 9.389 -7.303 12.024 hybrid contribution 1.058 -0.124 1.351 1.720 sum -0.700 9.265 -5.952 11.034 Atomic orbital electron populations 1.20919 0.87085 1.03452 1.04035 1.21663 0.98063 0.86646 0.90003 1.67489 1.10193 1.28369 1.15339 1.22015 0.88981 0.96966 0.90379 1.20206 0.97203 0.90790 0.98272 1.21813 1.01354 1.02719 0.93925 1.21931 0.95306 1.03749 0.99220 1.22195 1.03029 0.91664 1.03550 1.22003 0.92971 0.99920 0.91324 1.20808 0.95026 0.94849 1.10711 1.18134 0.86808 0.84011 0.76778 1.90646 1.14161 1.87540 1.52653 1.45946 1.11890 1.05185 1.70988 1.21180 0.93931 0.81785 1.01334 1.21570 0.93364 0.94057 0.89054 0.94343 1.22985 0.90827 0.86463 1.01813 1.87808 1.61783 1.47171 1.34777 1.23215 0.96784 0.99225 0.83988 1.21241 0.91263 0.85550 0.99540 1.44289 1.54472 1.14620 1.19737 1.19238 0.95787 1.01041 1.20810 0.91728 1.25461 0.94948 0.99509 1.01995 1.70069 1.00052 1.44268 1.42239 0.85777 0.77099 0.80831 0.80258 1.21091 1.21883 1.21222 0.89608 0.90401 0.89608 0.88859 0.89253 0.93746 0.92800 0.92408 0.89692 0.91641 0.81765 0.83947 0.75205 0.92869 0.89697 0.93230 0.86355 0.87799 0.93884 0.97334 0.91630 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 8.87 71.24 0.63 -2.36 16 2 C 0.17 5.86 6.82 42.89 0.29 6.15 16 3 N -0.50 -15.81 10.17 -171.06 -1.74 -17.55 16 4 C 0.15 4.20 5.79 42.57 0.25 4.45 16 5 C -0.05 -0.89 3.23 -11.54 -0.04 -0.93 16 6 C -0.14 -2.59 9.18 71.99 0.66 -1.93 16 7 C -0.14 -2.12 8.62 71.98 0.62 -1.50 16 8 C -0.19 -5.03 9.16 22.33 0.20 -4.82 16 9 C -0.04 -1.14 9.63 22.73 0.22 -0.92 16 10 C -0.21 -7.31 5.89 -19.99 -0.12 -7.43 16 11 C 0.56 20.90 7.71 86.78 0.67 21.57 16 12 O -0.57 -22.78 13.37 -3.90 -0.05 -22.83 16 13 N -0.69 -25.49 3.74 -465.98 -1.74 -27.23 16 14 C 0.14 4.95 4.45 86.38 0.38 5.33 16 15 C 0.13 4.60 3.21 44.97 0.14 4.75 16 16 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 17 C 0.06 1.83 6.29 72.08 0.45 2.29 16 18 O -0.40 -14.12 10.74 -148.98 -1.60 -15.72 16 19 C 0.05 1.65 6.98 72.08 0.50 2.15 16 20 C 0.15 6.60 5.37 86.36 0.46 7.07 16 21 N -0.61 -26.87 3.03 -673.73 -2.04 -28.91 16 22 C -0.24 -11.54 7.03 84.04 0.59 -10.95 16 23 H 0.07 3.24 5.84 -2.92 -0.02 3.23 16 24 C -0.02 -1.11 5.07 84.86 0.43 -0.68 16 25 N -0.92 -48.70 11.14 21.65 0.24 -48.46 16 26 Si 0.93 42.89 29.57 68.60 2.03 44.91 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 29 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.95 5.86 -2.39 -0.01 2.93 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.93 6.48 -2.39 -0.02 0.92 16 40 H 0.16 3.54 6.29 -2.91 -0.02 3.52 16 41 H 0.14 4.46 6.57 -2.91 -0.02 4.44 16 42 H 0.41 15.82 5.46 -92.71 -0.51 15.31 16 43 H 0.05 2.04 7.56 -2.38 -0.02 2.02 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 47 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.07 3.25 6.35 -2.38 -0.02 3.23 16 51 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -60.75 397.21 1.89 -58.86 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.44 Total: 34.72 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.36 Total: 22.22 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -5.28 Total: -122.16 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.65 Total: -38.55 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -60.75 1.89 -58.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051119544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.102 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds