Wall clock time and date at job start Wed Apr 1 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31696 * 119.71410 * 2 1 4 4 C 1.31919 * 121.87664 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.46231 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47328 * 94.99755 * 5 4 3 7 7 C 1.52995 * 109.47512 * 215.00292 * 5 4 3 8 8 C 1.38352 * 121.08476 * 0.02562 * 4 3 2 9 9 C 1.38366 * 119.29853 * 359.74194 * 8 4 3 10 10 C 1.39518 * 119.71677 * 180.02562 * 2 1 3 11 11 C 1.47842 * 120.55862 * 359.97438 * 10 2 1 12 12 O 1.21547 * 119.99946 * 354.41494 * 11 10 2 13 13 N 1.34774 * 120.00135 * 174.40898 * 11 10 2 14 14 C 1.46499 * 120.00463 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.44836 * 35.02891 * 14 13 11 16 16 C 1.53043 * 109.45318 * 275.06795 * 14 13 11 17 17 C 1.53631 * 109.23837 * 178.49064 * 16 14 13 18 18 N 1.46925 * 108.54241 * 54.85188 * 17 16 14 19 19 C 1.36936 * 120.62684 * 126.37061 * 18 17 16 20 20 H 1.08005 * 120.00197 * 331.36236 * 19 18 17 21 21 C 1.38813 * 120.00191 * 151.08061 * 19 18 17 22 22 N 1.31626 * 119.99551 * 346.23407 * 21 19 18 23 23 Si 1.86797 * 120.00209 * 166.23280 * 21 19 18 24 24 H 1.48499 * 109.47240 * 90.00408 * 23 21 19 25 25 H 1.48503 * 109.47129 * 210.00450 * 23 21 19 26 26 H 1.48505 * 109.46938 * 330.00107 * 23 21 19 27 27 C 1.46926 * 118.73993 * 306.09488 * 18 17 16 28 28 C 1.53039 * 109.46321 * 154.99938 * 14 13 11 29 29 H 1.09004 * 109.52451 * 61.41456 * 28 14 13 30 30 O 1.42898 * 109.49451 * 301.33754 * 28 14 13 31 31 H 1.09001 * 109.47313 * 263.44692 * 1 2 3 32 32 H 1.09008 * 109.47133 * 23.44606 * 1 2 3 33 33 H 1.08997 * 109.46885 * 143.44430 * 1 2 3 34 34 H 1.09009 * 109.46646 * 335.00254 * 5 4 3 35 35 H 1.08999 * 109.46949 * 300.00571 * 6 5 4 36 36 H 1.08999 * 109.46853 * 60.00048 * 6 5 4 37 37 H 1.08998 * 109.47399 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47215 * 59.99783 * 7 5 4 39 39 H 1.08998 * 109.47207 * 179.97438 * 7 5 4 40 40 H 1.08995 * 109.47283 * 299.99581 * 7 5 4 41 41 H 1.07997 * 120.35259 * 179.97438 * 8 4 3 42 42 H 1.08001 * 120.85457 * 180.26035 * 9 8 4 43 43 H 0.97006 * 119.99887 * 0.02562 * 13 11 10 44 44 H 1.08998 * 109.49801 * 298.55878 * 16 14 13 45 45 H 1.08995 * 109.50138 * 58.66215 * 16 14 13 46 46 H 1.08998 * 109.73603 * 295.11622 * 17 16 14 47 47 H 1.08995 * 109.66538 * 174.55289 * 17 16 14 48 48 H 0.97000 * 119.99426 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.58086 * 173.65145 * 27 18 17 50 50 H 1.08999 * 109.58688 * 294.07519 * 27 18 17 51 51 H 0.96703 * 113.99456 * 180.16586 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.1693 2.5327 0.0011 6 6 4.5143 2.9280 1.4382 7 6 5.4534 2.4443 -0.8259 8 6 4.2366 0.0365 0.0005 9 6 3.5987 -1.1913 0.0054 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.2545 -2.5039 0.1024 13 7 2.1402 -3.6567 -0.1148 14 6 1.4138 -4.9290 -0.1154 15 1 0.4566 -4.8001 -0.6204 16 6 1.1725 -5.3788 1.3274 17 6 0.3778 -6.6936 1.3216 18 7 1.0999 -7.6723 0.4974 19 6 1.4243 -8.9039 1.0005 20 1 1.5888 -9.0280 2.0607 21 6 1.5359 -9.9942 0.1486 22 7 1.0741 -9.9181 -1.0816 23 14 2.3414 -11.5694 0.7482 24 1 1.3107 -12.4564 1.3449 25 1 2.9877 -12.2613 -0.3958 26 1 3.3662 -11.2426 1.7720 27 6 1.4620 -7.3068 -0.8788 28 6 2.2397 -5.9873 -0.8502 29 1 3.1872 -6.1346 -0.3318 30 8 2.4905 -5.5523 -2.1880 31 1 -0.3634 -0.1173 1.0209 32 1 -0.3634 0.9429 -0.4089 33 1 -0.3633 -0.8255 -0.6121 34 1 3.5083 3.2829 -0.4333 35 1 3.5994 2.9910 2.0273 36 1 5.1751 2.1779 1.8726 37 1 5.0138 3.8968 1.4387 38 1 5.2076 2.1627 -1.8498 39 1 5.9531 3.4130 -0.8258 40 1 6.1143 1.6943 -0.3916 41 1 5.3152 0.0911 0.0005 42 1 4.1661 -2.1103 0.0098 43 1 3.1068 -3.6501 -0.1966 44 1 2.1298 -5.5318 1.8257 45 1 0.6044 -4.6140 1.8568 46 1 -0.6134 -6.5227 0.9016 47 1 0.2853 -7.0708 2.3400 48 1 1.1525 -10.6799 -1.6770 49 1 2.0851 -8.0889 -1.3127 50 1 0.5574 -7.1849 -1.4746 51 1 3.0082 -6.1771 -2.7141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090578214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:37 Heat of formation + Delta-G solvation = -38.490555 kcal Electronic energy + Delta-G solvation = -31014.942802 eV Core-core repulsion = 26914.426947 eV Total energy + Delta-G solvation = -4100.515856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.02836 -39.48361 -37.90448 -35.97140 -35.29386 -34.60202 -33.19621 -32.05929 -31.57225 -29.55616 -28.89416 -27.88155 -27.29026 -25.43843 -24.60788 -22.68279 -22.54886 -21.92545 -20.83554 -20.16686 -19.55384 -17.87213 -17.12146 -16.85980 -16.58678 -15.99260 -15.64807 -15.25040 -15.03230 -14.75615 -14.65158 -14.17198 -14.00558 -13.80093 -13.59691 -13.45932 -13.36601 -13.26809 -13.00269 -12.68431 -12.54052 -12.28081 -12.22226 -12.12820 -11.87830 -11.68960 -11.59380 -11.52319 -11.31301 -11.21719 -10.87209 -10.80258 -10.44851 -10.23958 -10.05741 -10.04217 -9.94198 -9.72500 -9.47763 -9.29432 -9.09253 -8.73253 -8.55994 -6.79507 -5.89414 -3.35461 0.50947 0.99932 2.87936 3.23495 3.30792 3.37759 3.39147 3.66427 3.82520 4.28865 4.37913 4.49326 4.52774 4.62063 4.68748 4.74204 4.83280 4.91320 5.20014 5.26293 5.29123 5.34350 5.37046 5.40975 5.43840 5.47284 5.55937 5.56708 5.61280 5.74501 5.80310 5.83251 5.85993 5.88319 5.96181 6.02031 6.06599 6.11824 6.23425 6.39882 6.42827 6.52683 6.67508 6.80354 6.88140 7.10713 7.45260 7.62963 7.68849 7.77307 8.06443 8.32723 8.34931 9.08932 9.70805 10.27105 11.18574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002215 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.922768 B =12640.337649 C =13075.453343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.193 3.807 3 N -0.490 5.490 4 C 0.160 3.840 5 C -0.049 4.049 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.188 4.188 9 C -0.036 4.036 10 C -0.191 4.191 11 C 0.560 3.440 12 O -0.531 6.531 13 N -0.709 5.709 14 C 0.163 3.837 15 H 0.090 0.910 16 C -0.139 4.139 17 C 0.145 3.855 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.068 0.932 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.148 3.852 28 C 0.071 3.929 29 H 0.051 0.949 30 O -0.573 6.573 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.394 0.606 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.025 0.975 47 H 0.061 0.939 48 H 0.255 0.745 49 H 0.097 0.903 50 H 0.029 0.971 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 22.252 1.116 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.054 3.946 3 N -0.200 5.200 4 C 0.022 3.978 5 C -0.069 4.069 6 C -0.199 4.199 7 C -0.206 4.206 8 C -0.207 4.207 9 C -0.062 4.062 10 C -0.196 4.196 11 C 0.347 3.653 12 O -0.410 6.410 13 N -0.358 5.358 14 C 0.059 3.941 15 H 0.108 0.892 16 C -0.180 4.180 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.735 3.265 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.021 3.979 28 C 0.011 3.989 29 H 0.069 0.931 30 O -0.378 6.378 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.229 0.771 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.115 0.885 50 H 0.048 0.952 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.667 23.360 1.262 24.619 hybrid contribution 1.821 -2.241 0.011 2.888 sum 9.488 21.119 1.273 23.188 Atomic orbital electron populations 1.21067 0.87423 1.03851 1.04306 1.21518 0.97560 0.86363 0.89111 1.67461 1.09213 1.28852 1.14427 1.21422 0.89369 0.95402 0.91644 1.20109 0.96510 0.92730 0.97513 1.21799 1.01911 1.01532 0.94642 1.21934 0.96305 1.02445 0.99889 1.21878 1.01671 0.92366 1.04807 1.21773 0.93250 0.98737 0.92475 1.20866 0.94345 0.95341 1.09032 1.17947 0.87148 0.83309 0.76904 1.90720 1.13346 1.86976 1.49908 1.46034 1.10548 1.05912 1.73304 1.21036 0.96223 0.80451 0.96358 0.89204 1.22495 1.01403 0.99320 0.94734 1.21037 0.93197 0.88036 0.95950 1.44019 1.63845 1.12872 1.10616 1.19207 1.41399 0.84500 0.93268 0.91396 1.25133 1.00078 0.97614 0.96860 1.69988 1.47517 1.30689 1.06665 0.86251 0.79249 0.83255 0.77738 1.21245 1.21520 1.20445 1.21452 0.97607 0.91825 0.87034 1.22997 0.98083 0.96001 0.81868 0.93118 1.86416 1.77464 1.48963 1.24944 0.89909 0.91454 0.87655 0.89048 0.92202 0.92400 0.91725 0.92232 0.91691 0.92008 0.84166 0.84423 0.77117 0.92049 0.91764 0.95719 0.92077 0.93448 0.88467 0.95246 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.89 36.01 0.32 -1.09 16 2 C 0.19 2.61 6.82 -82.17 -0.56 2.05 16 3 N -0.49 -6.23 10.17 -5.42 -0.06 -6.29 16 4 C 0.16 1.66 5.79 -82.51 -0.48 1.18 16 5 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 6 C -0.14 -0.93 9.18 37.16 0.34 -0.58 16 7 C -0.15 -0.84 8.61 37.15 0.32 -0.52 16 8 C -0.19 -1.74 9.16 -39.49 -0.36 -2.10 16 9 C -0.04 -0.38 9.63 -38.87 -0.37 -0.75 16 10 C -0.19 -2.53 5.89 -104.82 -0.62 -3.15 16 11 C 0.56 8.70 7.68 -12.33 -0.09 8.61 16 12 O -0.53 -9.60 13.02 5.32 0.07 -9.53 16 13 N -0.71 -10.51 4.87 -54.71 -0.27 -10.78 16 14 C 0.16 2.87 2.11 -67.89 -0.14 2.73 16 15 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 16 C -0.14 -2.46 5.67 -26.38 -0.15 -2.61 16 17 C 0.14 2.99 6.54 -3.48 -0.02 2.97 16 18 N -0.59 -14.18 2.99 -172.06 -0.51 -14.70 16 19 C -0.25 -6.68 9.60 -15.06 -0.14 -6.83 16 20 H 0.07 1.75 7.87 -52.48 -0.41 1.34 16 21 C 0.00 0.04 5.00 -17.43 -0.09 -0.04 16 22 N -0.90 -25.23 11.03 55.49 0.61 -24.62 16 23 Si 0.91 20.88 29.58 -169.99 -5.03 15.85 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C 0.15 3.35 4.91 -3.71 -0.02 3.34 16 28 C 0.07 1.30 3.14 -26.62 -0.08 1.21 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 O -0.57 -9.56 13.16 -35.23 -0.46 -10.03 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.11 1.52 5.83 -51.93 -0.30 1.22 16 34 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.30 6.48 -51.93 -0.34 -0.03 16 41 H 0.14 0.92 6.29 -52.49 -0.33 0.59 16 42 H 0.14 1.13 6.56 -52.49 -0.34 0.78 16 43 H 0.39 4.91 6.74 -40.82 -0.28 4.63 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 48 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.10 2.41 5.99 -51.93 -0.31 2.10 16 50 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.38 5.01 9.08 45.56 0.41 5.42 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -31.33 402.49 -9.37 -40.70 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.34 Total: 9.59 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.45 Total: 3.74 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.22 Total: -56.38 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.39 Total: -19.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.33 -9.37 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090578214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.206 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds