Wall clock time and date at job start Wed Apr 1 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31696 * 119.71410 * 2 1 4 4 C 1.31919 * 121.87664 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.46231 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47328 * 94.99755 * 5 4 3 7 7 C 1.52995 * 109.47512 * 215.00292 * 5 4 3 8 8 C 1.38352 * 121.08476 * 0.02562 * 4 3 2 9 9 C 1.38366 * 119.29853 * 359.74194 * 8 4 3 10 10 C 1.39518 * 119.71677 * 180.02562 * 2 1 3 11 11 C 1.47842 * 120.55862 * 359.97438 * 10 2 1 12 12 O 1.21547 * 119.99946 * 354.41494 * 11 10 2 13 13 N 1.34774 * 120.00135 * 174.40898 * 11 10 2 14 14 C 1.46499 * 120.00463 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.44836 * 35.02891 * 14 13 11 16 16 C 1.53043 * 109.45318 * 275.06795 * 14 13 11 17 17 C 1.53631 * 109.23837 * 178.49064 * 16 14 13 18 18 N 1.46925 * 108.54241 * 54.85188 * 17 16 14 19 19 C 1.36936 * 120.62684 * 126.37061 * 18 17 16 20 20 H 1.08005 * 120.00197 * 331.36236 * 19 18 17 21 21 C 1.38813 * 120.00191 * 151.08061 * 19 18 17 22 22 N 1.31626 * 119.99551 * 346.23407 * 21 19 18 23 23 Si 1.86797 * 120.00209 * 166.23280 * 21 19 18 24 24 H 1.48499 * 109.47240 * 90.00408 * 23 21 19 25 25 H 1.48503 * 109.47129 * 210.00450 * 23 21 19 26 26 H 1.48505 * 109.46938 * 330.00107 * 23 21 19 27 27 C 1.46926 * 118.73993 * 306.09488 * 18 17 16 28 28 C 1.53039 * 109.46321 * 154.99938 * 14 13 11 29 29 H 1.09004 * 109.52451 * 61.41456 * 28 14 13 30 30 O 1.42898 * 109.49451 * 301.33754 * 28 14 13 31 31 H 1.09001 * 109.47313 * 263.44692 * 1 2 3 32 32 H 1.09008 * 109.47133 * 23.44606 * 1 2 3 33 33 H 1.08997 * 109.46885 * 143.44430 * 1 2 3 34 34 H 1.09009 * 109.46646 * 335.00254 * 5 4 3 35 35 H 1.08999 * 109.46949 * 300.00571 * 6 5 4 36 36 H 1.08999 * 109.46853 * 60.00048 * 6 5 4 37 37 H 1.08998 * 109.47399 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47215 * 59.99783 * 7 5 4 39 39 H 1.08998 * 109.47207 * 179.97438 * 7 5 4 40 40 H 1.08995 * 109.47283 * 299.99581 * 7 5 4 41 41 H 1.07997 * 120.35259 * 179.97438 * 8 4 3 42 42 H 1.08001 * 120.85457 * 180.26035 * 9 8 4 43 43 H 0.97006 * 119.99887 * 0.02562 * 13 11 10 44 44 H 1.08998 * 109.49801 * 298.55878 * 16 14 13 45 45 H 1.08995 * 109.50138 * 58.66215 * 16 14 13 46 46 H 1.08998 * 109.73603 * 295.11622 * 17 16 14 47 47 H 1.08995 * 109.66538 * 174.55289 * 17 16 14 48 48 H 0.97000 * 119.99426 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.58086 * 173.65145 * 27 18 17 50 50 H 1.08999 * 109.58688 * 294.07519 * 27 18 17 51 51 H 0.96703 * 113.99456 * 180.16586 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.1693 2.5327 0.0011 6 6 4.5143 2.9280 1.4382 7 6 5.4534 2.4443 -0.8259 8 6 4.2366 0.0365 0.0005 9 6 3.5987 -1.1913 0.0054 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.2545 -2.5039 0.1024 13 7 2.1402 -3.6567 -0.1148 14 6 1.4138 -4.9290 -0.1154 15 1 0.4566 -4.8001 -0.6204 16 6 1.1725 -5.3788 1.3274 17 6 0.3778 -6.6936 1.3216 18 7 1.0999 -7.6723 0.4974 19 6 1.4243 -8.9039 1.0005 20 1 1.5888 -9.0280 2.0607 21 6 1.5359 -9.9942 0.1486 22 7 1.0741 -9.9181 -1.0816 23 14 2.3414 -11.5694 0.7482 24 1 1.3107 -12.4564 1.3449 25 1 2.9877 -12.2613 -0.3958 26 1 3.3662 -11.2426 1.7720 27 6 1.4620 -7.3068 -0.8788 28 6 2.2397 -5.9873 -0.8502 29 1 3.1872 -6.1346 -0.3318 30 8 2.4905 -5.5523 -2.1880 31 1 -0.3634 -0.1173 1.0209 32 1 -0.3634 0.9429 -0.4089 33 1 -0.3633 -0.8255 -0.6121 34 1 3.5083 3.2829 -0.4333 35 1 3.5994 2.9910 2.0273 36 1 5.1751 2.1779 1.8726 37 1 5.0138 3.8968 1.4387 38 1 5.2076 2.1627 -1.8498 39 1 5.9531 3.4130 -0.8258 40 1 6.1143 1.6943 -0.3916 41 1 5.3152 0.0911 0.0005 42 1 4.1661 -2.1103 0.0098 43 1 3.1068 -3.6501 -0.1966 44 1 2.1298 -5.5318 1.8257 45 1 0.6044 -4.6140 1.8568 46 1 -0.6134 -6.5227 0.9016 47 1 0.2853 -7.0708 2.3400 48 1 1.1525 -10.6799 -1.6770 49 1 2.0851 -8.0889 -1.3127 50 1 0.5574 -7.1849 -1.4746 51 1 3.0082 -6.1771 -2.7141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090578214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:36 Heat of formation + Delta-G solvation = -60.042896 kcal Electronic energy + Delta-G solvation = -31015.877382 eV Core-core repulsion = 26914.426947 eV Total energy + Delta-G solvation = -4101.450435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99461 -40.70835 -39.34172 -36.89506 -36.68497 -35.96916 -34.41624 -33.53556 -32.50251 -31.18626 -30.50809 -28.77669 -27.90667 -27.01748 -25.68010 -24.15433 -23.66267 -23.33579 -21.95117 -21.30607 -20.90854 -19.20706 -18.49378 -18.14939 -18.00109 -17.10751 -16.72433 -16.61893 -16.29093 -16.01506 -15.58699 -15.48365 -15.34269 -15.12403 -14.82550 -14.71689 -14.42835 -14.17602 -13.99584 -13.96556 -13.80843 -13.51997 -13.36283 -13.20631 -13.06887 -12.98540 -12.80121 -12.67220 -12.52513 -12.22942 -12.10314 -12.05275 -12.02112 -11.88597 -11.85237 -11.37619 -11.04010 -10.93115 -10.87661 -10.61424 -10.42156 -10.17342 -9.80063 -8.74885 -7.90176 -5.39822 -0.40524 0.16427 1.48432 1.49944 1.59385 1.79019 2.02505 2.49322 2.71978 3.03954 3.11246 3.27500 3.55572 3.61115 3.64322 3.68612 3.91193 3.98010 4.05698 4.14037 4.16076 4.27252 4.31129 4.40768 4.45213 4.52317 4.63293 4.65164 4.68283 4.73139 4.82595 4.87259 4.87661 4.93447 4.95616 5.01343 5.03621 5.04762 5.16408 5.20429 5.23059 5.33327 5.37531 5.43724 5.47195 5.58534 5.61753 5.63441 6.34056 6.47941 6.81936 6.88844 7.10460 7.16085 7.77211 8.30219 9.15955 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002215 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.922768 B =12640.337649 C =13075.453343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 N -0.509 5.509 4 C 0.154 3.846 5 C -0.049 4.049 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.178 4.178 9 C -0.031 4.031 10 C -0.209 4.209 11 C 0.559 3.441 12 O -0.564 6.564 13 N -0.698 5.698 14 C 0.172 3.828 15 H 0.058 0.942 16 C -0.122 4.122 17 C 0.141 3.859 18 N -0.605 5.605 19 C -0.263 4.263 20 H 0.073 0.927 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.156 3.844 28 C 0.092 3.908 29 H 0.068 0.932 30 O -0.574 6.574 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.176 0.824 42 H 0.165 0.835 43 H 0.410 0.590 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.010 0.990 47 H 0.067 0.933 48 H 0.252 0.748 49 H 0.075 0.925 50 H -0.006 1.006 51 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.777 23.609 1.994 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 N -0.219 5.219 4 C 0.016 3.984 5 C -0.068 4.068 6 C -0.196 4.196 7 C -0.202 4.202 8 C -0.197 4.197 9 C -0.057 4.057 10 C -0.214 4.214 11 C 0.348 3.652 12 O -0.445 6.445 13 N -0.348 5.348 14 C 0.067 3.933 15 H 0.076 0.924 16 C -0.162 4.162 17 C 0.015 3.985 18 N -0.330 5.330 19 C -0.393 4.393 20 H 0.091 0.909 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.191 1.191 27 C 0.029 3.971 28 C 0.031 3.969 29 H 0.086 0.914 30 O -0.381 6.381 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.194 0.806 42 H 0.182 0.818 43 H 0.247 0.753 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.093 0.907 50 H 0.012 0.988 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 11.111 24.745 2.143 27.209 hybrid contribution 0.739 -2.559 -0.286 2.679 sum 11.850 22.185 1.857 25.220 Atomic orbital electron populations 1.20932 0.87968 1.03420 1.03711 1.21554 0.97676 0.87001 0.90082 1.67481 1.10675 1.28462 1.15323 1.22045 0.88815 0.97315 0.90202 1.20213 0.97111 0.90963 0.98551 1.21787 1.01415 1.02806 0.93546 1.21931 0.95332 1.03847 0.99106 1.22257 1.03323 0.91253 1.02913 1.22088 0.92002 1.00464 0.91153 1.20696 0.95625 0.93721 1.11398 1.18318 0.86882 0.84059 0.75981 1.90712 1.14953 1.87481 1.51312 1.45754 1.11127 1.04664 1.73263 1.20688 0.95096 0.81673 0.95875 0.92373 1.22280 1.01520 0.97485 0.94958 1.21134 0.92813 0.88972 0.95566 1.44265 1.64512 1.13045 1.11132 1.19551 1.40704 0.85454 0.93607 0.90948 1.25888 1.00947 1.00602 0.97059 1.70157 1.48989 1.31308 1.07775 0.85224 0.78286 0.79381 0.77209 1.21520 1.21798 1.19137 1.21252 0.96180 0.93611 0.86025 1.22566 0.97805 0.93579 0.82930 0.91450 1.86398 1.77872 1.49359 1.24452 0.90281 0.90559 0.89628 0.89881 0.93877 0.91642 0.89898 0.92832 0.90176 0.90655 0.80645 0.81800 0.75329 0.90632 0.91105 0.97244 0.91454 0.93923 0.90708 0.98824 0.75839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 8.89 71.24 0.63 -2.14 16 2 C 0.17 4.71 6.82 42.89 0.29 5.00 16 3 N -0.51 -12.58 10.17 -171.06 -1.74 -14.32 16 4 C 0.15 2.87 5.79 42.57 0.25 3.12 16 5 C -0.05 -0.62 3.23 -11.54 -0.04 -0.66 16 6 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 7 C -0.14 -1.13 8.61 71.98 0.62 -0.51 16 8 C -0.18 -2.69 9.16 22.33 0.20 -2.49 16 9 C -0.03 -0.56 9.63 22.73 0.22 -0.34 16 10 C -0.21 -5.35 5.89 -19.99 -0.12 -5.46 16 11 C 0.56 17.17 7.68 86.79 0.67 17.83 16 12 O -0.56 -20.97 13.02 -3.86 -0.05 -21.02 16 13 N -0.70 -19.71 4.87 -445.30 -2.17 -21.88 16 14 C 0.17 5.99 2.11 45.02 0.10 6.09 16 15 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 16 C -0.12 -4.22 5.67 30.82 0.17 -4.05 16 17 C 0.14 5.90 6.54 86.51 0.57 6.47 16 18 N -0.60 -29.45 2.99 -698.26 -2.09 -31.54 16 19 C -0.26 -13.85 9.60 84.03 0.81 -13.05 16 20 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 21 C -0.05 -2.66 5.00 84.86 0.42 -2.24 16 22 N -0.94 -53.46 11.03 21.65 0.24 -53.22 16 23 Si 0.97 42.94 29.58 68.60 2.03 44.97 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 C 0.16 7.26 4.91 86.36 0.42 7.68 16 28 C 0.09 3.29 3.14 30.67 0.10 3.38 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 O -0.57 -18.51 13.16 -148.98 -1.96 -20.47 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.09 2.63 5.83 -2.39 -0.01 2.62 16 34 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 0.39 6.48 -2.39 -0.02 0.38 16 41 H 0.18 1.38 6.29 -2.91 -0.02 1.36 16 42 H 0.16 2.00 6.56 -2.91 -0.02 1.98 16 43 H 0.41 9.02 6.74 -92.70 -0.63 8.40 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 48 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 49 H 0.07 3.81 5.99 -2.38 -0.01 3.79 16 50 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 51 H 0.39 9.93 9.08 -74.05 -0.67 9.26 16 Total: -1.00 -69.91 402.49 -0.11 -70.02 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.34 Total: 29.61 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 5.97 Total: 17.85 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -5.76 Total: -120.96 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.01 Total: -41.49 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.91 -0.11 -70.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090578214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.979 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds