Wall clock time and date at job start Wed Apr 1 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.64041 * 2 1 4 4 O 1.21287 * 120.00207 * 114.80163 * 3 2 1 5 5 N 1.34772 * 120.00241 * 294.80170 * 3 2 1 6 6 C 1.46508 * 120.00507 * 179.97438 * 5 3 2 7 7 H 1.08996 * 110.88227 * 322.64669 * 6 5 3 8 8 C 1.54630 * 110.96724 * 86.45014 * 6 5 3 9 9 C 1.51285 * 104.30829 * 142.98298 * 8 6 5 10 10 O 1.21279 * 124.93620 * 163.64106 * 9 8 6 11 11 N 1.34420 * 110.11914 * 343.68590 * 9 8 6 12 12 C 1.46492 * 124.35256 * 179.57245 * 11 9 8 13 13 C 1.53948 * 113.74213 * 38.75624 * 12 11 9 14 14 N 1.47808 * 86.04005 * 222.08855 * 13 12 11 15 15 C 1.36936 * 134.45838 * 204.64790 * 14 13 12 16 16 H 1.07998 * 120.00091 * 184.60691 * 15 14 13 17 17 C 1.38815 * 119.99856 * 4.60772 * 15 14 13 18 18 N 1.31617 * 120.00030 * 5.37360 * 17 15 14 19 19 Si 1.86803 * 119.99972 * 185.37830 * 17 15 14 20 20 H 1.48502 * 109.47021 * 84.99144 * 19 17 15 21 21 H 1.48497 * 109.47158 * 204.99400 * 19 17 15 22 22 H 1.48501 * 109.46857 * 324.99595 * 19 17 15 23 23 C 1.47577 * 91.05094 * 24.55091 * 14 13 12 24 24 C 1.46766 * 111.29831 * 359.58596 * 11 9 8 25 25 C 1.53023 * 109.64364 * 120.41775 * 2 1 3 26 26 C 1.50069 * 110.14819 * 169.33144 * 25 2 1 27 27 C 1.29443 * 124.07575 * 342.87056 * 26 25 2 28 28 C 1.50064 * 124.07593 * 0.49636 * 27 26 25 29 29 C 1.53046 * 110.13877 * 342.82458 * 28 27 26 30 30 H 1.08995 * 109.46891 * 59.99986 * 1 2 3 31 31 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47076 * 300.00058 * 1 2 3 33 33 H 0.97006 * 119.99795 * 359.97438 * 5 3 2 34 34 H 1.09002 * 110.48551 * 24.24635 * 8 6 5 35 35 H 1.08991 * 110.48595 * 261.73147 * 8 6 5 36 36 H 1.08993 * 112.94591 * 170.35464 * 12 11 9 37 37 H 1.08998 * 113.77159 * 336.35928 * 13 12 11 38 38 H 1.09004 * 113.76416 * 107.74820 * 13 12 11 39 39 H 0.96998 * 119.99684 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.77436 * 221.15300 * 23 14 13 41 41 H 1.09004 * 113.76945 * 89.75219 * 23 14 13 42 42 H 1.09001 * 110.24243 * 136.01799 * 24 11 9 43 43 H 1.08998 * 110.25098 * 258.02127 * 24 11 9 44 44 H 1.09001 * 109.35879 * 289.53980 * 25 2 1 45 45 H 1.08994 * 109.35947 * 49.12842 * 25 2 1 46 46 H 1.08004 * 117.96692 * 162.84702 * 26 25 2 47 47 H 1.08003 * 117.96093 * 180.46438 * 27 26 25 48 48 H 1.08996 * 109.36363 * 103.04626 * 28 27 26 49 49 H 1.09001 * 109.35810 * 222.63904 * 28 27 26 50 50 H 1.08997 * 109.65772 * 289.78095 * 29 28 27 51 51 H 1.08997 * 109.63175 * 169.13986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6553 1.8424 0.9535 5 7 1.8019 2.2186 -1.0595 6 6 2.2938 3.5986 -1.0593 7 1 2.2156 4.0388 -0.0653 8 6 3.7474 3.6680 -1.5823 9 6 3.7969 4.9528 -2.3795 10 8 4.8134 5.5201 -2.7200 11 7 2.5506 5.3746 -2.6547 12 6 2.2371 6.5935 -3.4043 13 6 3.1883 6.8565 -4.5859 14 7 3.1672 8.2703 -4.1552 15 6 3.3825 9.4676 -4.7838 16 1 3.3779 10.3851 -4.2141 17 6 3.6066 9.5021 -6.1533 18 7 3.5076 8.3990 -6.8643 19 14 4.0487 11.1143 -6.9870 20 1 5.5131 11.3388 -6.8853 21 1 3.6550 11.0559 -8.4177 22 1 3.3295 12.2296 -6.3208 23 6 2.8186 7.8736 -2.7772 24 6 1.5443 4.4571 -2.1074 25 6 2.0444 -0.7297 1.2428 26 6 3.5221 -0.9654 1.1292 27 6 4.1845 -0.8956 0.0193 28 6 3.5691 -0.5586 -1.3073 29 6 2.0500 -0.7330 -1.2430 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.3073 1.8801 -1.8223 34 1 3.9635 2.8130 -2.2230 35 1 4.4505 3.7077 -0.7505 36 1 1.1817 6.6727 -3.6645 37 1 4.1626 6.3794 -4.4801 38 1 2.7337 6.6864 -5.5619 39 1 3.6639 8.4232 -7.8213 40 1 2.0695 8.5141 -2.3116 41 1 3.6842 7.6960 -2.1389 42 1 0.7418 5.0190 -1.6296 43 1 1.1429 3.8225 -2.8975 44 1 1.8419 -0.1247 2.1267 45 1 1.5321 -1.6870 1.3376 46 1 4.0670 -1.2081 2.0296 47 1 5.2461 -1.0915 0.0499 48 1 3.8039 0.4747 -1.5625 49 1 3.9764 -1.2192 -2.0727 50 1 1.8053 -1.7928 -1.1726 51 1 1.5943 -0.3072 -2.1369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094738091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:20 Heat of formation + Delta-G solvation = 7.428282 kcal Electronic energy + Delta-G solvation = -31459.768348 eV Core-core repulsion = 27361.243682 eV Total energy + Delta-G solvation = -4098.524666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.23571 -40.24684 -37.88735 -37.12660 -36.30429 -34.27598 -33.27514 -32.13080 -31.14256 -30.17452 -27.57037 -27.11038 -27.02391 -24.71942 -24.00065 -23.48752 -23.27294 -21.60382 -20.57672 -20.16492 -18.59440 -18.30985 -17.00406 -16.72392 -16.61756 -16.27827 -15.99864 -15.57009 -15.18939 -14.74358 -14.67521 -14.34338 -14.07740 -13.95763 -13.86895 -13.55235 -13.51465 -13.32781 -13.01447 -12.91088 -12.66226 -12.44149 -12.39626 -12.31039 -12.01844 -11.89728 -11.79529 -11.56999 -11.43583 -11.13556 -10.82494 -10.81281 -10.68897 -10.53887 -10.19684 -9.99306 -9.91736 -9.63971 -9.49346 -9.21579 -9.09442 -8.67228 -8.17691 -6.79674 -5.71246 -3.04389 2.10734 2.40459 2.72054 2.93410 3.31391 3.43225 3.48722 3.49175 4.08788 4.13890 4.26800 4.29276 4.49994 4.51976 4.65992 4.76314 4.82629 4.88933 4.94076 5.00512 5.06923 5.23629 5.24713 5.25906 5.30865 5.35457 5.38365 5.44172 5.52518 5.54936 5.63817 5.65357 5.66977 5.67944 5.72569 5.80958 5.85885 5.88201 6.18130 6.30765 6.39033 6.53472 6.59120 6.73283 6.87291 7.18650 7.32455 7.50176 7.59188 7.63050 7.97213 8.02987 8.55954 9.08652 9.75366 10.64519 11.44625 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.002132 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.470188 B =13128.154975 C =13292.219246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.531 3.469 4 O -0.527 6.527 5 N -0.721 5.721 6 C 0.136 3.864 7 H 0.109 0.891 8 C -0.166 4.166 9 C 0.515 3.485 10 O -0.509 6.509 11 N -0.606 5.606 12 C 0.100 3.900 13 C 0.145 3.855 14 N -0.604 5.604 15 C -0.219 4.219 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.112 3.888 24 C 0.099 3.901 25 C -0.068 4.068 26 C -0.141 4.141 27 C -0.162 4.162 28 C -0.098 4.098 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -24.398 14.319 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C 0.317 3.683 4 O -0.401 6.401 5 N -0.374 5.374 6 C 0.031 3.969 7 H 0.127 0.873 8 C -0.208 4.208 9 C 0.302 3.698 10 O -0.383 6.383 11 N -0.341 5.341 12 C -0.002 4.002 13 C 0.020 3.980 14 N -0.331 5.331 15 C -0.346 4.346 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.015 4.015 24 C -0.026 4.026 25 C -0.106 4.106 26 C -0.159 4.159 27 C -0.180 4.180 28 C -0.135 4.135 29 C -0.145 4.145 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.399 -23.472 14.504 28.842 hybrid contribution 0.186 0.664 -0.819 1.070 sum -8.213 -22.809 13.685 27.838 Atomic orbital electron populations 1.21844 0.92056 1.03131 1.02803 1.20929 0.97006 0.92184 0.98279 1.20396 0.78900 0.87086 0.81955 1.90719 1.39539 1.75401 1.34469 1.45947 1.58465 1.12153 1.20811 1.21830 0.92659 0.82006 1.00440 0.87297 1.22815 0.98364 0.98035 1.01550 1.20607 0.83485 0.85799 0.79956 1.90784 1.33422 1.60467 1.53638 1.48513 1.06022 1.24555 1.54992 1.24077 1.00739 0.80760 0.94662 1.22889 0.96137 0.84060 0.94954 1.45634 1.81716 1.01833 1.03890 1.18971 1.42011 0.83423 0.90225 0.90280 1.24789 1.02385 0.97383 0.95966 1.69818 1.54898 1.25888 1.05965 0.86117 0.78353 0.82557 0.78607 1.21560 1.21657 1.20666 1.22940 0.96538 0.92067 0.90002 1.22251 0.92214 0.92462 0.95634 1.20347 0.93590 0.99754 0.96863 1.21887 0.95841 1.00387 0.97741 1.21931 0.99650 1.01973 0.94456 1.20525 0.94625 1.02223 0.96097 1.21711 0.95781 1.01088 0.95939 0.91795 0.91184 0.91787 0.76341 0.88002 0.87961 0.87620 0.92904 0.90399 0.93686 0.93960 0.94163 0.89712 0.90939 0.89932 0.90227 0.87934 0.88051 0.90742 0.90589 0.90376 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 8.45 37.16 0.31 -0.30 16 2 C -0.08 -0.51 0.65 -155.45 -0.10 -0.62 16 3 C 0.53 4.79 4.72 -10.99 -0.05 4.74 16 4 O -0.53 -6.88 15.05 5.55 0.08 -6.80 16 5 N -0.72 -5.31 4.97 -52.04 -0.26 -5.57 16 6 C 0.14 1.31 3.44 -66.10 -0.23 1.08 16 7 H 0.11 1.16 7.73 -51.93 -0.40 0.76 16 8 C -0.17 -2.04 6.58 -26.74 -0.18 -2.21 16 9 C 0.52 8.81 7.42 -10.86 -0.08 8.73 16 10 O -0.51 -11.42 14.61 5.56 0.08 -11.34 16 11 N -0.61 -9.31 3.15 -166.41 -0.53 -9.83 16 12 C 0.10 1.92 4.81 -70.14 -0.34 1.58 16 13 C 0.15 3.64 7.10 -2.84 -0.02 3.62 16 14 N -0.60 -16.43 3.70 -177.86 -0.66 -17.09 16 15 C -0.22 -6.41 10.69 -15.06 -0.16 -6.57 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.92 -28.04 11.29 55.49 0.63 -27.41 16 19 Si 0.91 22.82 29.56 -169.99 -5.02 17.80 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.11 2.46 8.44 -2.97 -0.03 2.44 16 24 C 0.10 0.98 7.08 -2.93 -0.02 0.95 16 25 C -0.07 -0.49 4.54 -28.18 -0.13 -0.62 16 26 C -0.14 -1.18 9.06 -35.90 -0.33 -1.50 16 27 C -0.16 -1.37 9.61 -35.90 -0.35 -1.71 16 28 C -0.10 -0.70 5.59 -28.17 -0.16 -0.86 16 29 C -0.11 -0.57 4.73 -26.51 -0.13 -0.70 16 30 H 0.06 0.21 7.96 -51.93 -0.41 -0.20 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 1.94 7.52 -40.82 -0.31 1.64 16 34 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.05 1.45 5.72 -51.93 -0.30 1.15 16 38 H 0.08 2.11 6.87 -51.93 -0.36 1.75 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.94 7.25 -51.93 -0.38 0.57 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 44 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 45 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 46 H 0.10 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 48 H 0.07 0.63 7.36 -51.93 -0.38 0.24 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 51 H 0.07 0.28 7.59 -51.93 -0.39 -0.12 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -37.07 399.10 -10.07 -47.14 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.34 Total: -0.62 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.06 Total: 7.71 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.81 Total: -59.90 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.16 Total: -18.14 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.07 -10.07 -47.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094738091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.567 kcal (2) G-P(sol) polarization free energy of solvation -37.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds