Wall clock time and date at job start Wed Apr 1 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.64041 * 2 1 4 4 O 1.21287 * 120.00207 * 114.80163 * 3 2 1 5 5 N 1.34772 * 120.00241 * 294.80170 * 3 2 1 6 6 C 1.46508 * 120.00507 * 179.97438 * 5 3 2 7 7 H 1.08996 * 110.88227 * 322.64669 * 6 5 3 8 8 C 1.54630 * 110.96724 * 86.45014 * 6 5 3 9 9 C 1.51285 * 104.30829 * 142.98298 * 8 6 5 10 10 O 1.21279 * 124.93620 * 163.64106 * 9 8 6 11 11 N 1.34420 * 110.11914 * 343.68590 * 9 8 6 12 12 C 1.46492 * 124.35256 * 179.57245 * 11 9 8 13 13 C 1.53948 * 113.74213 * 38.75624 * 12 11 9 14 14 N 1.47808 * 86.04005 * 222.08855 * 13 12 11 15 15 C 1.36936 * 134.45838 * 204.64790 * 14 13 12 16 16 H 1.07998 * 120.00091 * 184.60691 * 15 14 13 17 17 C 1.38815 * 119.99856 * 4.60772 * 15 14 13 18 18 N 1.31617 * 120.00030 * 5.37360 * 17 15 14 19 19 Si 1.86803 * 119.99972 * 185.37830 * 17 15 14 20 20 H 1.48502 * 109.47021 * 84.99144 * 19 17 15 21 21 H 1.48497 * 109.47158 * 204.99400 * 19 17 15 22 22 H 1.48501 * 109.46857 * 324.99595 * 19 17 15 23 23 C 1.47577 * 91.05094 * 24.55091 * 14 13 12 24 24 C 1.46766 * 111.29831 * 359.58596 * 11 9 8 25 25 C 1.53023 * 109.64364 * 120.41775 * 2 1 3 26 26 C 1.50069 * 110.14819 * 169.33144 * 25 2 1 27 27 C 1.29443 * 124.07575 * 342.87056 * 26 25 2 28 28 C 1.50064 * 124.07593 * 0.49636 * 27 26 25 29 29 C 1.53046 * 110.13877 * 342.82458 * 28 27 26 30 30 H 1.08995 * 109.46891 * 59.99986 * 1 2 3 31 31 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47076 * 300.00058 * 1 2 3 33 33 H 0.97006 * 119.99795 * 359.97438 * 5 3 2 34 34 H 1.09002 * 110.48551 * 24.24635 * 8 6 5 35 35 H 1.08991 * 110.48595 * 261.73147 * 8 6 5 36 36 H 1.08993 * 112.94591 * 170.35464 * 12 11 9 37 37 H 1.08998 * 113.77159 * 336.35928 * 13 12 11 38 38 H 1.09004 * 113.76416 * 107.74820 * 13 12 11 39 39 H 0.96998 * 119.99684 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.77436 * 221.15300 * 23 14 13 41 41 H 1.09004 * 113.76945 * 89.75219 * 23 14 13 42 42 H 1.09001 * 110.24243 * 136.01799 * 24 11 9 43 43 H 1.08998 * 110.25098 * 258.02127 * 24 11 9 44 44 H 1.09001 * 109.35879 * 289.53980 * 25 2 1 45 45 H 1.08994 * 109.35947 * 49.12842 * 25 2 1 46 46 H 1.08004 * 117.96692 * 162.84702 * 26 25 2 47 47 H 1.08003 * 117.96093 * 180.46438 * 27 26 25 48 48 H 1.08996 * 109.36363 * 103.04626 * 28 27 26 49 49 H 1.09001 * 109.35810 * 222.63904 * 28 27 26 50 50 H 1.08997 * 109.65772 * 289.78095 * 29 28 27 51 51 H 1.08997 * 109.63175 * 169.13986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6553 1.8424 0.9535 5 7 1.8019 2.2186 -1.0595 6 6 2.2938 3.5986 -1.0593 7 1 2.2156 4.0388 -0.0653 8 6 3.7474 3.6680 -1.5823 9 6 3.7969 4.9528 -2.3795 10 8 4.8134 5.5201 -2.7200 11 7 2.5506 5.3746 -2.6547 12 6 2.2371 6.5935 -3.4043 13 6 3.1883 6.8565 -4.5859 14 7 3.1672 8.2703 -4.1552 15 6 3.3825 9.4676 -4.7838 16 1 3.3779 10.3851 -4.2141 17 6 3.6066 9.5021 -6.1533 18 7 3.5076 8.3990 -6.8643 19 14 4.0487 11.1143 -6.9870 20 1 5.5131 11.3388 -6.8853 21 1 3.6550 11.0559 -8.4177 22 1 3.3295 12.2296 -6.3208 23 6 2.8186 7.8736 -2.7772 24 6 1.5443 4.4571 -2.1074 25 6 2.0444 -0.7297 1.2428 26 6 3.5221 -0.9654 1.1292 27 6 4.1845 -0.8956 0.0193 28 6 3.5691 -0.5586 -1.3073 29 6 2.0500 -0.7330 -1.2430 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.3073 1.8801 -1.8223 34 1 3.9635 2.8130 -2.2230 35 1 4.4505 3.7077 -0.7505 36 1 1.1817 6.6727 -3.6645 37 1 4.1626 6.3794 -4.4801 38 1 2.7337 6.6864 -5.5619 39 1 3.6639 8.4232 -7.8213 40 1 2.0695 8.5141 -2.3116 41 1 3.6842 7.6960 -2.1389 42 1 0.7418 5.0190 -1.6296 43 1 1.1429 3.8225 -2.8975 44 1 1.8419 -0.1247 2.1267 45 1 1.5321 -1.6870 1.3376 46 1 4.0670 -1.2081 2.0296 47 1 5.2461 -1.0915 0.0499 48 1 3.8039 0.4747 -1.5625 49 1 3.9764 -1.2192 -2.0727 50 1 1.8053 -1.7928 -1.1726 51 1 1.5943 -0.3072 -2.1369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094738091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:19 Heat of formation + Delta-G solvation = -18.320256 kcal Electronic energy + Delta-G solvation = -31460.884888 eV Core-core repulsion = 27361.243682 eV Total energy + Delta-G solvation = -4099.641206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07705 -41.37323 -39.09866 -38.41451 -37.46805 -35.31499 -34.28741 -33.72501 -31.82148 -31.31355 -29.19643 -28.37163 -27.45016 -26.62132 -25.35273 -24.45110 -23.99046 -22.48776 -22.12819 -20.96713 -19.77515 -19.24371 -18.80298 -17.86752 -17.67269 -17.20504 -17.02309 -16.70525 -16.48362 -15.96745 -15.81918 -15.57755 -15.22044 -14.90821 -14.83552 -14.68455 -14.60887 -14.34784 -14.04821 -13.70631 -13.50172 -13.44371 -13.41362 -13.29480 -13.08544 -12.91298 -12.82902 -12.77661 -12.72754 -12.56019 -12.35767 -12.24917 -12.03759 -11.90476 -11.53957 -11.29443 -11.11056 -11.04240 -10.76213 -10.55065 -10.09576 -9.78670 -9.58492 -8.94013 -7.92557 -5.28630 1.42291 1.46604 1.47545 1.54103 1.56216 1.72282 1.85380 2.20588 2.47671 3.23667 3.31582 3.45993 3.49013 3.59603 3.70747 3.77852 3.80298 3.91061 4.01194 4.17715 4.24278 4.27796 4.43885 4.47636 4.51871 4.54610 4.61364 4.66081 4.75097 4.77914 4.81549 4.88258 4.90282 4.90449 4.95856 4.99213 5.07095 5.17710 5.19260 5.23641 5.29688 5.32676 5.39965 5.46454 5.47252 5.77997 5.83107 5.90020 6.12673 6.23443 6.59325 6.87423 7.20338 7.32760 7.56305 8.51903 9.22935 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.002132 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.470188 B =13128.154975 C =13292.219246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C 0.529 3.471 4 O -0.572 6.572 5 N -0.705 5.705 6 C 0.152 3.848 7 H 0.102 0.898 8 C -0.153 4.153 9 C 0.504 3.496 10 O -0.574 6.574 11 N -0.604 5.604 12 C 0.139 3.861 13 C 0.141 3.859 14 N -0.635 5.635 15 C -0.238 4.238 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.983 3.017 20 H -0.291 1.291 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.111 3.889 24 C 0.100 3.900 25 C -0.070 4.070 26 C -0.151 4.151 27 C -0.176 4.176 28 C -0.100 4.100 29 C -0.103 4.103 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.419 0.581 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.250 0.750 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 -25.719 14.501 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C 0.317 3.683 4 O -0.449 6.449 5 N -0.358 5.358 6 C 0.046 3.954 7 H 0.120 0.880 8 C -0.194 4.194 9 C 0.293 3.707 10 O -0.453 6.453 11 N -0.337 5.337 12 C 0.035 3.965 13 C 0.015 3.985 14 N -0.361 5.361 15 C -0.367 4.367 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.810 3.190 20 H -0.219 1.219 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.015 4.015 24 C -0.022 4.022 25 C -0.107 4.107 26 C -0.169 4.169 27 C -0.194 4.194 28 C -0.137 4.137 29 C -0.141 4.141 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.156 0.844 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.602 -24.845 14.715 31.119 hybrid contribution 1.243 1.007 -0.778 1.779 sum -10.359 -23.838 13.937 29.492 Atomic orbital electron populations 1.21870 0.89951 1.04485 1.03277 1.20942 0.98490 0.90032 0.98368 1.20958 0.77930 0.88094 0.81325 1.90712 1.41583 1.76392 1.36260 1.45759 1.57953 1.10973 1.21148 1.21555 0.90636 0.83292 0.99952 0.87962 1.22720 1.00409 0.95652 1.00625 1.21439 0.83051 0.86775 0.79451 1.90750 1.35769 1.62630 1.56125 1.48446 1.07113 1.24062 1.54053 1.23381 1.00490 0.81309 0.91326 1.22698 0.96010 0.83618 0.96182 1.46065 1.81891 1.01949 1.06229 1.19390 1.41726 0.84677 0.90867 0.89958 1.25706 1.02695 1.00988 0.96661 1.70016 1.55956 1.27999 1.05835 0.85036 0.77653 0.78878 0.77392 1.21862 1.21435 1.18816 1.23018 0.96492 0.94043 0.87945 1.22598 0.91023 0.92051 0.96547 1.20396 0.92809 1.00685 0.96818 1.22070 0.96934 1.00275 0.97584 1.22099 0.99582 1.02279 0.95438 1.20567 0.96320 1.01483 0.95367 1.21762 0.94117 1.02047 0.96165 0.90066 0.89460 0.92607 0.74275 0.86511 0.88984 0.84392 0.96176 0.92987 0.94151 0.91456 0.96012 0.86926 0.87572 0.91538 0.88010 0.88488 0.88782 0.92137 0.89676 0.88937 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.45 71.98 0.61 -0.05 16 2 C -0.08 -0.74 0.65 -52.79 -0.03 -0.78 16 3 C 0.53 8.40 4.72 87.66 0.41 8.81 16 4 O -0.57 -14.53 15.05 -3.05 -0.05 -14.57 16 5 N -0.70 -8.00 4.97 -436.95 -2.17 -10.17 16 6 C 0.15 2.52 3.44 46.17 0.16 2.68 16 7 H 0.10 1.96 7.73 -2.39 -0.02 1.94 16 8 C -0.15 -3.62 6.58 30.59 0.20 -3.41 16 9 C 0.50 17.37 7.42 87.90 0.65 18.02 16 10 O -0.57 -27.16 14.61 -3.03 -0.04 -27.21 16 11 N -0.60 -17.54 3.15 -799.00 -2.52 -20.06 16 12 C 0.14 5.15 4.81 46.75 0.22 5.38 16 13 C 0.14 7.28 7.10 86.44 0.61 7.89 16 14 N -0.63 -35.18 3.70 -716.62 -2.65 -37.83 16 15 C -0.24 -14.19 10.69 84.03 0.90 -13.29 16 16 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 18 N -0.95 -59.51 11.29 21.65 0.24 -59.27 16 19 Si 0.98 47.50 29.56 68.60 2.03 49.53 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.11 4.89 8.44 86.49 0.73 5.62 16 24 C 0.10 1.56 7.08 86.95 0.62 2.18 16 25 C -0.07 -0.89 4.54 29.66 0.13 -0.75 16 26 C -0.15 -2.47 9.06 27.04 0.24 -2.22 16 27 C -0.18 -2.89 9.61 27.04 0.26 -2.63 16 28 C -0.10 -1.26 5.59 29.66 0.17 -1.09 16 29 C -0.10 -0.74 4.73 30.74 0.15 -0.59 16 30 H 0.08 0.13 7.96 -2.39 -0.02 0.11 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.42 2.01 7.52 -92.70 -0.70 1.31 16 34 H 0.12 2.43 8.08 -2.39 -0.02 2.41 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.14 4.32 8.14 -2.39 -0.02 4.31 16 37 H 0.02 1.18 5.72 -2.39 -0.01 1.17 16 38 H 0.05 2.92 6.87 -2.38 -0.02 2.90 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.02 1.05 7.25 -2.38 -0.02 1.04 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 1.07 7.78 -2.39 -0.02 1.05 16 44 H 0.07 1.07 7.68 -2.39 -0.02 1.05 16 45 H 0.10 0.81 8.10 -2.39 -0.02 0.79 16 46 H 0.10 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.09 1.59 8.06 -2.91 -0.02 1.56 16 48 H 0.06 0.92 7.36 -2.39 -0.02 0.91 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 51 H 0.09 0.27 7.59 -2.39 -0.02 0.25 16 Total: -1.00 -87.11 399.10 1.57 -85.54 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.23 Total: 11.85 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 6.50 Total: 22.20 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -7.09 Total: -127.33 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.09 Total: -41.78 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -87.11 1.57 -85.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094738091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.218 kcal (2) G-P(sol) polarization free energy of solvation -87.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds