Wall clock time and date at job start Wed Apr 1 2020 06:01:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50690 * 1
3 3 C 1.38156 * 119.55334 * 2 1
4 4 C 1.39818 * 118.99996 * 179.97438 * 3 2 1
5 5 C 1.48151 * 120.91764 * 179.97438 * 4 3 2
6 6 O 1.21509 * 120.00270 * 325.31155 * 5 4 3
7 7 N 1.34780 * 119.99914 * 145.31656 * 5 4 3
8 8 C 1.46931 * 120.62744 * 354.20496 * 7 5 4
9 9 C 1.53194 * 108.88921 * 233.51672 * 8 7 5
10 10 C 1.53073 * 109.29675 * 305.57831 * 9 8 7
11 11 N 1.46503 * 109.44281 * 181.23888 * 10 9 8
12 12 C 1.36938 * 119.99580 * 299.79780 * 11 10 9
13 13 H 1.07996 * 120.00190 * 322.53245 * 12 11 10
14 14 C 1.38816 * 119.99852 * 142.53572 * 12 11 10
15 15 N 1.31616 * 119.99801 * 158.05288 * 14 12 11
16 16 Si 1.86799 * 119.99689 * 338.05362 * 14 12 11
17 17 H 1.48501 * 109.47290 * 95.06758 * 16 14 12
18 18 H 1.48502 * 109.46734 * 215.06782 * 16 14 12
19 19 H 1.48496 * 109.47440 * 335.06451 * 16 14 12
20 20 C 1.46495 * 120.00177 * 119.79547 * 11 10 9
21 21 C 1.53001 * 109.46920 * 87.12461 * 20 11 10
22 22 O 1.42901 * 109.46995 * 66.15838 * 21 20 11
23 23 C 1.53043 * 109.65794 * 61.15750 * 10 9 8
24 24 C 1.46918 * 120.63167 * 174.18491 * 7 5 4
25 25 C 1.39806 * 118.15890 * 0.25443 * 4 3 2
26 26 C 1.38158 * 119.00377 * 359.52087 * 25 4 3
27 27 C 1.50693 * 119.55754 * 180.22922 * 26 25 4
28 28 N 1.31813 * 119.55283 * 180.02562 * 2 1 3
29 29 H 1.09000 * 109.47341 * 89.99799 * 1 2 3
30 30 H 1.08996 * 109.47279 * 209.99685 * 1 2 3
31 31 H 1.09001 * 109.47547 * 329.99987 * 1 2 3
32 32 H 1.08004 * 120.49720 * 359.97438 * 3 2 1
33 33 H 1.08995 * 109.58772 * 353.37192 * 8 7 5
34 34 H 1.09001 * 109.58358 * 113.66119 * 8 7 5
35 35 H 1.08997 * 109.50024 * 65.38991 * 9 8 7
36 36 H 1.08996 * 109.49648 * 185.48773 * 9 8 7
37 37 H 1.09006 * 109.34715 * 301.13223 * 10 9 8
38 38 H 0.97006 * 119.99489 * 180.02562 * 15 14 12
39 39 H 1.08990 * 109.47109 * 207.12939 * 20 11 10
40 40 H 1.09002 * 109.46751 * 327.12997 * 20 11 10
41 41 H 1.09005 * 109.47199 * 186.15347 * 21 20 11
42 42 H 1.09001 * 109.47557 * 306.15434 * 21 20 11
43 43 H 0.96700 * 113.99987 * 180.02562 * 22 21 20
44 44 H 1.08994 * 109.49809 * 178.75021 * 23 10 9
45 45 H 1.08994 * 109.52250 * 58.66196 * 23 10 9
46 46 H 1.09001 * 109.58694 * 246.19655 * 24 7 5
47 47 H 1.09001 * 109.59044 * 6.48182 * 24 7 5
48 48 H 1.08004 * 120.50409 * 179.72708 * 25 4 3
49 49 H 1.09001 * 109.47091 * 270.25849 * 27 26 25
50 50 H 1.08999 * 109.47129 * 30.25788 * 27 26 25
51 51 H 1.08994 * 109.47101 * 150.25720 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1883 1.2018 0.0000
4 6 3.5864 1.1883 0.0005
5 6 4.3599 2.4519 0.0000
6 8 3.9394 3.4214 -0.5997
7 7 5.5301 2.5260 0.6646
8 6 5.9902 1.4063 1.4973
9 6 6.3042 1.9295 2.9025
10 6 7.2971 3.0900 2.8000
11 7 7.6224 3.5736 4.1441
12 6 6.6319 4.0601 4.9550
13 1 5.8268 4.6436 4.5334
14 6 6.6627 3.8034 6.3188
15 7 6.0064 4.5843 7.1505
16 14 7.6358 2.3495 6.9737
17 1 8.9866 2.8050 7.3898
18 1 6.9284 1.7663 8.1419
19 1 7.7659 1.3214 5.9101
20 6 9.0071 3.5366 4.6207
21 6 9.7273 4.8177 4.1952
22 8 9.1492 5.9361 4.8713
23 6 6.6772 4.2275 1.9851
24 6 6.3700 3.7277 0.5699
25 6 4.2343 -0.0506 -0.0044
26 6 3.4740 -1.2041 0.0005
27 6 4.1593 -2.5462 0.0005
28 7 2.1570 -1.1466 -0.0005
29 1 -0.3634 0.0000 -1.0277
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3634 0.8900 0.5138
32 1 1.6491 2.1376 -0.0004
33 1 5.2086 0.6489 1.5556
34 1 6.8889 0.9711 1.0601
35 1 5.3859 2.2794 3.3740
36 1 6.7383 1.1282 3.5004
37 1 8.2066 2.7448 2.3083
38 1 6.0283 4.4051 8.1036
39 1 9.0152 3.4592 5.7079
40 1 9.5163 2.6738 4.1912
41 1 10.7837 4.7436 4.4533
42 1 9.6249 4.9516 3.1183
43 1 9.5572 6.7841 4.6487
44 1 7.3775 5.0610 1.9326
45 1 5.7546 4.5570 2.4628
46 1 7.3011 3.4834 0.0585
47 1 5.8399 4.5012 0.0141
48 1 5.3129 -0.1052 -0.0086
49 1 4.3250 -2.8696 -1.0272
50 1 5.1170 -2.4651 0.5147
51 1 3.5318 -3.2746 0.5139
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098380668.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:01:00
Heat of formation + Delta-G solvation = -12.206276 kcal
Electronic energy + Delta-G solvation = -31823.964388 eV
Core-core repulsion = 27724.588304 eV
Total energy + Delta-G solvation = -4099.376084 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.04560 -39.55191 -37.77680 -36.36080 -34.86577 -33.97730 -33.30643 -31.90959
-30.86924 -30.69716 -29.31397 -27.98427 -27.00485 -25.62019 -24.02456 -23.04797
-22.74040 -22.01283 -21.11362 -20.01696 -18.96707 -17.47306 -16.76208 -16.67720
-16.37998 -16.19253 -15.70229 -15.26573 -15.20780 -14.75783 -14.69174 -14.54259
-13.85911 -13.64981 -13.52330 -13.42099 -13.38279 -13.29133 -12.97056 -12.76791
-12.64026 -12.46572 -12.33436 -12.12887 -12.05177 -11.92738 -11.78976 -11.59921
-11.13682 -10.90117 -10.74015 -10.56994 -10.37079 -10.26099 -9.98900 -9.89870
-9.70187 -9.56887 -9.44459 -9.15273 -8.92113 -8.58599 -8.39166 -6.80548
-5.88322 -3.29755 0.66632 0.86730 2.69797 2.96626 3.33101 3.46386
3.49560 3.56458 3.94211 4.21194 4.46062 4.57778 4.72739 4.76259
4.83840 5.01172 5.05686 5.10736 5.23734 5.28304 5.30270 5.32971
5.35913 5.40732 5.42718 5.43469 5.54589 5.63172 5.71417 5.76431
5.83065 5.84014 5.86489 5.87118 5.89725 5.97651 6.06789 6.11411
6.12615 6.30540 6.37665 6.44965 6.50076 6.70900 6.72644 6.94557
6.98706 7.39217 7.76947 8.09186 8.11268 8.41116 8.49565 9.03421
9.80728 10.16128 11.27873
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013064 B = 0.003134 C = 0.002942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2142.841387 B = 8932.246401 C = 9516.200596
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.130 3.870
3 C -0.126 4.126
4 C -0.070 4.070
5 C 0.559 3.441
6 O -0.536 6.536
7 N -0.594 5.594
8 C 0.093 3.907
9 C -0.142 4.142
10 C 0.180 3.820
11 N -0.593 5.593
12 C -0.247 4.247
13 H 0.075 0.925
14 C 0.042 3.958
15 N -0.899 5.899
16 Si 0.873 3.127
17 H -0.289 1.289
18 H -0.304 1.304
19 H -0.271 1.271
20 C 0.131 3.869
21 C 0.062 3.938
22 O -0.536 6.536
23 C -0.138 4.138
24 C 0.114 3.886
25 C -0.153 4.153
26 C 0.127 3.873
27 C -0.103 4.103
28 N -0.474 5.474
29 H 0.079 0.921
30 H 0.079 0.921
31 H 0.078 0.922
32 H 0.144 0.856
33 H 0.089 0.911
34 H 0.068 0.932
35 H 0.079 0.921
36 H 0.071 0.929
37 H 0.050 0.950
38 H 0.260 0.740
39 H 0.064 0.936
40 H 0.049 0.951
41 H 0.022 0.978
42 H 0.031 0.969
43 H 0.354 0.646
44 H 0.070 0.930
45 H 0.074 0.926
46 H 0.064 0.936
47 H 0.088 0.912
48 H 0.146 0.854
49 H 0.078 0.922
50 H 0.077 0.923
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.172 -10.664 -15.672 18.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.008 4.008
3 C -0.146 4.146
4 C -0.081 4.081
5 C 0.346 3.654
6 O -0.414 6.414
7 N -0.326 5.326
8 C -0.030 4.030
9 C -0.182 4.182
10 C 0.073 3.927
11 N -0.314 5.314
12 C -0.376 4.376
13 H 0.093 0.907
14 C -0.158 4.158
15 N -0.540 5.540
16 Si 0.704 3.296
17 H -0.217 1.217
18 H -0.233 1.233
19 H -0.196 1.196
20 C 0.006 3.994
21 C -0.019 4.019
22 O -0.337 6.337
23 C -0.178 4.178
24 C -0.008 4.008
25 C -0.173 4.173
26 C -0.010 4.010
27 C -0.161 4.161
28 N -0.186 5.186
29 H 0.097 0.903
30 H 0.097 0.903
31 H 0.097 0.903
32 H 0.162 0.838
33 H 0.107 0.893
34 H 0.086 0.914
35 H 0.097 0.903
36 H 0.089 0.911
37 H 0.068 0.932
38 H 0.070 0.930
39 H 0.082 0.918
40 H 0.068 0.932
41 H 0.040 0.960
42 H 0.050 0.950
43 H 0.197 0.803
44 H 0.089 0.911
45 H 0.093 0.907
46 H 0.082 0.918
47 H 0.106 0.894
48 H 0.164 0.836
49 H 0.097 0.903
50 H 0.096 0.904
51 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -1.282 -11.347 -15.530 19.277
hybrid contribution 1.601 0.522 0.411 1.734
sum 0.320 -10.825 -15.119 18.597
Atomic orbital electron populations
1.20726 0.88272 1.03814 1.03229 1.21237 0.97194 0.87635 0.94731
1.22042 0.93096 1.00035 0.99474 1.20333 0.94464 0.93744 0.99518
1.18204 0.80670 0.87086 0.79431 1.90763 1.68610 1.37100 1.44891
1.48010 1.20070 1.18259 1.46253 1.22369 0.99835 0.88721 0.92077
1.22381 1.02573 0.99582 0.93630 1.20315 0.94540 0.91215 0.86620
1.44080 1.02201 1.72307 1.12785 1.18492 1.04262 1.26383 0.88439
0.90704 1.25348 0.96864 0.97286 0.96309 1.69876 1.45071 1.36556
1.02501 0.87014 0.78968 0.85616 0.78015 1.21709 1.23267 1.19634
1.21349 0.85806 0.92688 0.99594 1.22899 0.94205 0.89929 0.94859
1.86931 1.61867 1.15864 1.69083 1.22330 1.02791 0.99559 0.93108
1.21754 0.93527 0.86734 0.98829 1.22323 1.01791 0.91826 1.01365
1.21221 0.89204 0.95635 0.94969 1.20727 0.99982 0.92186 1.03180
1.67213 1.09652 1.29543 1.12155 0.90253 0.90256 0.90347 0.83843
0.89286 0.91425 0.90268 0.91080 0.93158 0.93039 0.91780 0.93229
0.96013 0.95027 0.80309 0.91136 0.90717 0.91783 0.89364 0.83631
0.90311 0.90392 0.90242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.88 10.16 36.00 0.37 -0.51 16
2 C 0.13 1.53 6.78 -82.64 -0.56 0.97 16
3 C -0.13 -1.62 9.35 -39.02 -0.36 -1.98 16
4 C -0.07 -0.94 5.32 -104.65 -0.56 -1.50 16
5 C 0.56 8.72 7.43 -12.19 -0.09 8.63 16
6 O -0.54 -9.92 16.31 5.36 0.09 -9.83 16
7 N -0.59 -8.56 2.97 -173.77 -0.52 -9.08 16
8 C 0.09 1.19 4.82 -3.71 -0.02 1.17 16
9 C -0.14 -2.37 5.32 -26.59 -0.14 -2.51 16
10 C 0.18 3.19 2.59 -67.87 -0.18 3.01 16
11 N -0.59 -13.02 1.99 -165.59 -0.33 -13.35 16
12 C -0.25 -6.63 8.38 -15.06 -0.13 -6.76 16
13 H 0.08 2.24 7.03 -52.49 -0.37 1.87 16
14 C 0.04 1.20 5.29 -17.43 -0.09 1.10 16
15 N -0.90 -27.67 13.97 55.49 0.78 -26.89 16
16 Si 0.87 21.91 25.02 -169.99 -4.25 17.66 16
17 H -0.29 -7.19 6.66 56.52 0.38 -6.82 16
18 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16
19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
20 C 0.13 2.71 4.76 -4.04 -0.02 2.69 16
21 C 0.06 1.11 7.38 37.16 0.27 1.39 16
22 O -0.54 -11.09 13.32 -35.23 -0.47 -11.56 16
23 C -0.14 -2.35 5.30 -26.61 -0.14 -2.49 16
24 C 0.11 1.63 6.44 -3.71 -0.02 1.61 16
25 C -0.15 -1.72 7.11 -39.02 -0.28 -2.00 16
26 C 0.13 1.41 6.78 -82.63 -0.56 0.85 16
27 C -0.10 -0.79 10.16 36.00 0.37 -0.43 16
28 N -0.47 -5.86 10.16 -5.79 -0.06 -5.92 16
29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16
32 H 0.14 1.76 8.05 -52.48 -0.42 1.34 16
33 H 0.09 1.07 4.44 -51.93 -0.23 0.84 16
34 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16
35 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16
36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
37 H 0.05 0.78 7.83 -51.93 -0.41 0.38 16
38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
39 H 0.06 1.52 3.36 -51.93 -0.17 1.34 16
40 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16
41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
43 H 0.35 5.32 9.12 45.56 0.42 5.73 16
44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
45 H 0.07 1.53 7.06 -51.93 -0.37 1.16 16
46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
47 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16
48 H 0.15 1.34 6.11 -52.48 -0.32 1.02 16
49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
50 H 0.08 0.47 8.08 -51.93 -0.42 0.06 16
51 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 399.49 15.07 6.02 6.02
Total: -1.00 -35.18 399.49 -8.16 -43.34
By element:
Atomic # 1 Polarization: 13.65 SS G_CDS: -7.28 Total: 6.38 kcal
Atomic # 6 Polarization: 5.37 SS G_CDS: -2.14 Total: 3.23 kcal
Atomic # 7 Polarization: -55.11 SS G_CDS: -0.13 Total: -55.24 kcal
Atomic # 8 Polarization: -21.01 SS G_CDS: -0.38 Total: -21.39 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -4.25 Total: 17.66 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -35.18 -8.16 -43.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098380668.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.137 kcal
(2) G-P(sol) polarization free energy of solvation -35.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds