Wall clock time and date at job start Wed Apr 1 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38156 * 119.55334 * 2 1 4 4 C 1.39818 * 118.99996 * 179.97438 * 3 2 1 5 5 C 1.48151 * 120.91764 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00270 * 325.31155 * 5 4 3 7 7 N 1.34780 * 119.99914 * 145.31656 * 5 4 3 8 8 C 1.46931 * 120.62744 * 354.20496 * 7 5 4 9 9 C 1.53194 * 108.88921 * 233.51672 * 8 7 5 10 10 C 1.53073 * 109.29675 * 305.57831 * 9 8 7 11 11 N 1.46503 * 109.44281 * 181.23888 * 10 9 8 12 12 C 1.36938 * 119.99580 * 299.79780 * 11 10 9 13 13 H 1.07996 * 120.00190 * 322.53245 * 12 11 10 14 14 C 1.38816 * 119.99852 * 142.53572 * 12 11 10 15 15 N 1.31616 * 119.99801 * 158.05288 * 14 12 11 16 16 Si 1.86799 * 119.99689 * 338.05362 * 14 12 11 17 17 H 1.48501 * 109.47290 * 95.06758 * 16 14 12 18 18 H 1.48502 * 109.46734 * 215.06782 * 16 14 12 19 19 H 1.48496 * 109.47440 * 335.06451 * 16 14 12 20 20 C 1.46495 * 120.00177 * 119.79547 * 11 10 9 21 21 C 1.53001 * 109.46920 * 87.12461 * 20 11 10 22 22 O 1.42901 * 109.46995 * 66.15838 * 21 20 11 23 23 C 1.53043 * 109.65794 * 61.15750 * 10 9 8 24 24 C 1.46918 * 120.63167 * 174.18491 * 7 5 4 25 25 C 1.39806 * 118.15890 * 0.25443 * 4 3 2 26 26 C 1.38158 * 119.00377 * 359.52087 * 25 4 3 27 27 C 1.50693 * 119.55754 * 180.22922 * 26 25 4 28 28 N 1.31813 * 119.55283 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47341 * 89.99799 * 1 2 3 30 30 H 1.08996 * 109.47279 * 209.99685 * 1 2 3 31 31 H 1.09001 * 109.47547 * 329.99987 * 1 2 3 32 32 H 1.08004 * 120.49720 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.58772 * 353.37192 * 8 7 5 34 34 H 1.09001 * 109.58358 * 113.66119 * 8 7 5 35 35 H 1.08997 * 109.50024 * 65.38991 * 9 8 7 36 36 H 1.08996 * 109.49648 * 185.48773 * 9 8 7 37 37 H 1.09006 * 109.34715 * 301.13223 * 10 9 8 38 38 H 0.97006 * 119.99489 * 180.02562 * 15 14 12 39 39 H 1.08990 * 109.47109 * 207.12939 * 20 11 10 40 40 H 1.09002 * 109.46751 * 327.12997 * 20 11 10 41 41 H 1.09005 * 109.47199 * 186.15347 * 21 20 11 42 42 H 1.09001 * 109.47557 * 306.15434 * 21 20 11 43 43 H 0.96700 * 113.99987 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.49809 * 178.75021 * 23 10 9 45 45 H 1.08994 * 109.52250 * 58.66196 * 23 10 9 46 46 H 1.09001 * 109.58694 * 246.19655 * 24 7 5 47 47 H 1.09001 * 109.59044 * 6.48182 * 24 7 5 48 48 H 1.08004 * 120.50409 * 179.72708 * 25 4 3 49 49 H 1.09001 * 109.47091 * 270.25849 * 27 26 25 50 50 H 1.08999 * 109.47129 * 30.25788 * 27 26 25 51 51 H 1.08994 * 109.47101 * 150.25720 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1883 0.0005 5 6 4.3599 2.4519 0.0000 6 8 3.9394 3.4214 -0.5997 7 7 5.5301 2.5260 0.6646 8 6 5.9902 1.4063 1.4973 9 6 6.3042 1.9295 2.9025 10 6 7.2971 3.0900 2.8000 11 7 7.6224 3.5736 4.1441 12 6 6.6319 4.0601 4.9550 13 1 5.8268 4.6436 4.5334 14 6 6.6627 3.8034 6.3188 15 7 6.0064 4.5843 7.1505 16 14 7.6358 2.3495 6.9737 17 1 8.9866 2.8050 7.3898 18 1 6.9284 1.7663 8.1419 19 1 7.7659 1.3214 5.9101 20 6 9.0071 3.5366 4.6207 21 6 9.7273 4.8177 4.1952 22 8 9.1492 5.9361 4.8713 23 6 6.6772 4.2275 1.9851 24 6 6.3700 3.7277 0.5699 25 6 4.2343 -0.0506 -0.0044 26 6 3.4740 -1.2041 0.0005 27 6 4.1593 -2.5462 0.0005 28 7 2.1570 -1.1466 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6491 2.1376 -0.0004 33 1 5.2086 0.6489 1.5556 34 1 6.8889 0.9711 1.0601 35 1 5.3859 2.2794 3.3740 36 1 6.7383 1.1282 3.5004 37 1 8.2066 2.7448 2.3083 38 1 6.0283 4.4051 8.1036 39 1 9.0152 3.4592 5.7079 40 1 9.5163 2.6738 4.1912 41 1 10.7837 4.7436 4.4533 42 1 9.6249 4.9516 3.1183 43 1 9.5572 6.7841 4.6487 44 1 7.3775 5.0610 1.9326 45 1 5.7546 4.5570 2.4628 46 1 7.3011 3.4834 0.0585 47 1 5.8399 4.5012 0.0141 48 1 5.3129 -0.1052 -0.0086 49 1 4.3250 -2.8696 -1.0272 50 1 5.1170 -2.4651 0.5147 51 1 3.5318 -3.2746 0.5139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098380668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:00 Heat of formation + Delta-G solvation = -12.206276 kcal Electronic energy + Delta-G solvation = -31823.964388 eV Core-core repulsion = 27724.588304 eV Total energy + Delta-G solvation = -4099.376084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04560 -39.55191 -37.77680 -36.36080 -34.86577 -33.97730 -33.30643 -31.90959 -30.86924 -30.69716 -29.31397 -27.98427 -27.00485 -25.62019 -24.02456 -23.04797 -22.74040 -22.01283 -21.11362 -20.01696 -18.96707 -17.47306 -16.76208 -16.67720 -16.37998 -16.19253 -15.70229 -15.26573 -15.20780 -14.75783 -14.69174 -14.54259 -13.85911 -13.64981 -13.52330 -13.42099 -13.38279 -13.29133 -12.97056 -12.76791 -12.64026 -12.46572 -12.33436 -12.12887 -12.05177 -11.92738 -11.78976 -11.59921 -11.13682 -10.90117 -10.74015 -10.56994 -10.37079 -10.26099 -9.98900 -9.89870 -9.70187 -9.56887 -9.44459 -9.15273 -8.92113 -8.58599 -8.39166 -6.80548 -5.88322 -3.29755 0.66632 0.86730 2.69797 2.96626 3.33101 3.46386 3.49560 3.56458 3.94211 4.21194 4.46062 4.57778 4.72739 4.76259 4.83840 5.01172 5.05686 5.10736 5.23734 5.28304 5.30270 5.32971 5.35913 5.40732 5.42718 5.43469 5.54589 5.63172 5.71417 5.76431 5.83065 5.84014 5.86489 5.87118 5.89725 5.97651 6.06789 6.11411 6.12615 6.30540 6.37665 6.44965 6.50076 6.70900 6.72644 6.94557 6.98706 7.39217 7.76947 8.09186 8.11268 8.41116 8.49565 9.03421 9.80728 10.16128 11.27873 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003134 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.841387 B = 8932.246401 C = 9516.200596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.130 3.870 3 C -0.126 4.126 4 C -0.070 4.070 5 C 0.559 3.441 6 O -0.536 6.536 7 N -0.594 5.594 8 C 0.093 3.907 9 C -0.142 4.142 10 C 0.180 3.820 11 N -0.593 5.593 12 C -0.247 4.247 13 H 0.075 0.925 14 C 0.042 3.958 15 N -0.899 5.899 16 Si 0.873 3.127 17 H -0.289 1.289 18 H -0.304 1.304 19 H -0.271 1.271 20 C 0.131 3.869 21 C 0.062 3.938 22 O -0.536 6.536 23 C -0.138 4.138 24 C 0.114 3.886 25 C -0.153 4.153 26 C 0.127 3.873 27 C -0.103 4.103 28 N -0.474 5.474 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.022 0.978 42 H 0.031 0.969 43 H 0.354 0.646 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.146 0.854 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -10.664 -15.672 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 C -0.146 4.146 4 C -0.081 4.081 5 C 0.346 3.654 6 O -0.414 6.414 7 N -0.326 5.326 8 C -0.030 4.030 9 C -0.182 4.182 10 C 0.073 3.927 11 N -0.314 5.314 12 C -0.376 4.376 13 H 0.093 0.907 14 C -0.158 4.158 15 N -0.540 5.540 16 Si 0.704 3.296 17 H -0.217 1.217 18 H -0.233 1.233 19 H -0.196 1.196 20 C 0.006 3.994 21 C -0.019 4.019 22 O -0.337 6.337 23 C -0.178 4.178 24 C -0.008 4.008 25 C -0.173 4.173 26 C -0.010 4.010 27 C -0.161 4.161 28 N -0.186 5.186 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.197 0.803 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.164 0.836 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.282 -11.347 -15.530 19.277 hybrid contribution 1.601 0.522 0.411 1.734 sum 0.320 -10.825 -15.119 18.597 Atomic orbital electron populations 1.20726 0.88272 1.03814 1.03229 1.21237 0.97194 0.87635 0.94731 1.22042 0.93096 1.00035 0.99474 1.20333 0.94464 0.93744 0.99518 1.18204 0.80670 0.87086 0.79431 1.90763 1.68610 1.37100 1.44891 1.48010 1.20070 1.18259 1.46253 1.22369 0.99835 0.88721 0.92077 1.22381 1.02573 0.99582 0.93630 1.20315 0.94540 0.91215 0.86620 1.44080 1.02201 1.72307 1.12785 1.18492 1.04262 1.26383 0.88439 0.90704 1.25348 0.96864 0.97286 0.96309 1.69876 1.45071 1.36556 1.02501 0.87014 0.78968 0.85616 0.78015 1.21709 1.23267 1.19634 1.21349 0.85806 0.92688 0.99594 1.22899 0.94205 0.89929 0.94859 1.86931 1.61867 1.15864 1.69083 1.22330 1.02791 0.99559 0.93108 1.21754 0.93527 0.86734 0.98829 1.22323 1.01791 0.91826 1.01365 1.21221 0.89204 0.95635 0.94969 1.20727 0.99982 0.92186 1.03180 1.67213 1.09652 1.29543 1.12155 0.90253 0.90256 0.90347 0.83843 0.89286 0.91425 0.90268 0.91080 0.93158 0.93039 0.91780 0.93229 0.96013 0.95027 0.80309 0.91136 0.90717 0.91783 0.89364 0.83631 0.90311 0.90392 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.00 0.37 -0.51 16 2 C 0.13 1.53 6.78 -82.64 -0.56 0.97 16 3 C -0.13 -1.62 9.35 -39.02 -0.36 -1.98 16 4 C -0.07 -0.94 5.32 -104.65 -0.56 -1.50 16 5 C 0.56 8.72 7.43 -12.19 -0.09 8.63 16 6 O -0.54 -9.92 16.31 5.36 0.09 -9.83 16 7 N -0.59 -8.56 2.97 -173.77 -0.52 -9.08 16 8 C 0.09 1.19 4.82 -3.71 -0.02 1.17 16 9 C -0.14 -2.37 5.32 -26.59 -0.14 -2.51 16 10 C 0.18 3.19 2.59 -67.87 -0.18 3.01 16 11 N -0.59 -13.02 1.99 -165.59 -0.33 -13.35 16 12 C -0.25 -6.63 8.38 -15.06 -0.13 -6.76 16 13 H 0.08 2.24 7.03 -52.49 -0.37 1.87 16 14 C 0.04 1.20 5.29 -17.43 -0.09 1.10 16 15 N -0.90 -27.67 13.97 55.49 0.78 -26.89 16 16 Si 0.87 21.91 25.02 -169.99 -4.25 17.66 16 17 H -0.29 -7.19 6.66 56.52 0.38 -6.82 16 18 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.13 2.71 4.76 -4.04 -0.02 2.69 16 21 C 0.06 1.11 7.38 37.16 0.27 1.39 16 22 O -0.54 -11.09 13.32 -35.23 -0.47 -11.56 16 23 C -0.14 -2.35 5.30 -26.61 -0.14 -2.49 16 24 C 0.11 1.63 6.44 -3.71 -0.02 1.61 16 25 C -0.15 -1.72 7.11 -39.02 -0.28 -2.00 16 26 C 0.13 1.41 6.78 -82.63 -0.56 0.85 16 27 C -0.10 -0.79 10.16 36.00 0.37 -0.43 16 28 N -0.47 -5.86 10.16 -5.79 -0.06 -5.92 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.14 1.76 8.05 -52.48 -0.42 1.34 16 33 H 0.09 1.07 4.44 -51.93 -0.23 0.84 16 34 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.78 7.83 -51.93 -0.41 0.38 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.52 3.36 -51.93 -0.17 1.34 16 40 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.35 5.32 9.12 45.56 0.42 5.73 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.53 7.06 -51.93 -0.37 1.16 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 48 H 0.15 1.34 6.11 -52.48 -0.32 1.02 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.47 8.08 -51.93 -0.42 0.06 16 51 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -35.18 399.49 -8.16 -43.34 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.28 Total: 6.38 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.14 Total: 3.23 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.13 Total: -55.24 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.38 Total: -21.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.25 Total: 17.66 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.18 -8.16 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098380668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.137 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds