Wall clock time and date at job start Wed Apr 1 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38350 * 119.45583 * 2 1 4 4 C 1.38357 * 119.30185 * 179.71833 * 3 2 1 5 5 C 1.40029 * 118.28463 * 0.53900 * 4 3 2 6 6 C 1.47849 * 120.55531 * 179.75808 * 5 4 3 7 7 O 1.21554 * 119.99497 * 229.66528 * 6 5 4 8 8 N 1.34770 * 120.00057 * 49.66518 * 6 5 4 9 9 C 1.46929 * 120.63152 * 4.75236 * 8 6 5 10 10 C 1.53624 * 108.54095 * 126.37057 * 9 8 6 11 11 C 1.53039 * 109.24119 * 54.85826 * 10 9 8 12 12 N 1.46505 * 109.46063 * 178.49138 * 11 10 9 13 13 C 1.36932 * 120.00162 * 60.06393 * 12 11 10 14 14 H 1.08004 * 120.00123 * 321.39641 * 13 12 11 15 15 C 1.38810 * 120.00447 * 141.39262 * 13 12 11 16 16 N 1.31627 * 119.99417 * 339.18715 * 15 13 12 17 17 Si 1.86793 * 120.00411 * 159.18123 * 15 13 12 18 18 H 1.48497 * 109.46975 * 90.00494 * 17 15 13 19 19 H 1.48501 * 109.47195 * 209.99988 * 17 15 13 20 20 H 1.48496 * 109.47350 * 330.00320 * 17 15 13 21 21 C 1.46497 * 119.99919 * 240.06924 * 12 11 10 22 22 C 1.53003 * 109.47128 * 84.55677 * 21 12 11 23 23 O 1.42901 * 109.47223 * 65.00254 * 22 21 12 24 24 C 1.53041 * 109.53781 * 298.50935 * 11 10 9 25 25 C 1.46924 * 120.62879 * 185.03782 * 8 6 5 26 26 C 1.39515 * 118.88278 * 359.48394 * 5 4 3 27 27 C 1.50699 * 119.71406 * 180.23348 * 26 5 4 28 28 N 1.31688 * 120.56827 * 0.24895 * 26 5 4 29 29 H 1.09002 * 109.47443 * 269.97712 * 1 2 3 30 30 H 1.08997 * 109.47212 * 29.98512 * 1 2 3 31 31 H 1.09005 * 109.46792 * 149.98463 * 1 2 3 32 32 H 1.07996 * 120.35402 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.85904 * 180.27124 * 4 3 2 34 34 H 1.08996 * 109.58749 * 246.20565 * 9 8 6 35 35 H 1.08999 * 109.58363 * 6.62666 * 9 8 6 36 36 H 1.08994 * 109.63687 * 294.86563 * 10 9 8 37 37 H 1.09000 * 109.42954 * 174.72600 * 10 9 8 38 38 H 1.09003 * 109.44936 * 58.52441 * 11 10 9 39 39 H 0.96996 * 119.99538 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47037 * 204.55426 * 21 12 11 41 41 H 1.08999 * 109.47461 * 324.55829 * 21 12 11 42 42 H 1.09007 * 109.46744 * 185.00042 * 22 21 12 43 43 H 1.09000 * 109.47318 * 305.00001 * 22 21 12 44 44 H 0.96693 * 113.99820 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.49626 * 301.41350 * 24 11 10 46 46 H 1.09004 * 109.52240 * 181.33823 * 24 11 10 47 47 H 1.08998 * 109.58716 * 353.36745 * 25 8 6 48 48 H 1.08997 * 109.59095 * 113.65616 * 25 8 6 49 49 H 1.08998 * 109.47297 * 88.04918 * 27 26 5 50 50 H 1.09005 * 109.46755 * 208.04595 * 27 26 5 51 51 H 1.09000 * 109.47113 * 328.04553 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0059 5 6 4.2312 -0.0339 0.0001 6 6 5.7083 -0.0964 0.0007 7 8 6.2871 -0.7989 -0.8050 8 7 6.4130 0.6254 0.8944 9 6 5.7278 1.3974 1.9401 10 6 6.3081 0.9943 3.3042 11 6 7.8271 1.1789 3.2806 12 7 8.3816 0.8300 4.5911 13 6 8.2105 -0.4325 5.0928 14 1 7.2739 -0.9498 4.9456 15 6 9.2407 -1.0477 5.7906 16 7 10.4805 -0.6341 5.6339 17 14 8.8679 -2.4623 6.9522 18 1 8.9392 -3.7455 6.2083 19 1 9.8631 -2.4732 8.0543 20 1 7.5052 -2.2928 7.5173 21 6 9.1190 1.8319 5.3647 22 6 8.1328 2.6876 6.1624 23 8 7.4714 1.8728 7.1323 24 6 8.4366 0.2699 2.2108 25 6 7.8807 0.6603 0.8377 26 6 3.4716 -1.2042 -0.0003 27 6 4.1628 -2.5433 -0.0012 28 7 2.1559 -1.1487 -0.0003 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6443 2.1381 -0.0004 33 1 4.1273 2.1266 0.0105 34 1 5.8878 2.4624 1.7721 35 1 4.6605 1.1779 1.9161 36 1 6.0716 -0.0499 3.5087 37 1 5.8770 1.6245 4.0821 38 1 8.0629 2.2181 3.0515 39 1 11.2004 -1.0637 6.1218 40 1 9.8024 1.3308 6.0502 41 1 9.6868 2.4690 4.6865 42 1 8.6728 3.4883 6.6679 43 1 7.3949 3.1180 5.4854 44 1 6.8297 2.3506 7.6754 45 1 8.1801 -0.7674 2.4256 46 1 9.5206 0.3840 2.2104 47 1 8.2343 -0.0456 0.0863 48 1 8.2127 1.6658 0.5793 49 1 4.3608 -2.8507 1.0257 50 1 3.5234 -3.2819 -0.4846 51 1 5.1042 -2.4659 -0.5452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098570449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:18 Heat of formation + Delta-G solvation = -25.545034 kcal Electronic energy + Delta-G solvation = -31999.399058 eV Core-core repulsion = 27899.444562 eV Total energy + Delta-G solvation = -4099.954496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00708 -39.40172 -37.56749 -36.19543 -34.69581 -33.78957 -33.23405 -31.88371 -30.64280 -30.34316 -29.21811 -27.91115 -27.19767 -24.89696 -23.53266 -22.99891 -22.69905 -22.03083 -20.82910 -20.03623 -19.08660 -17.46404 -16.84938 -16.62893 -16.25766 -15.93590 -15.60631 -15.00840 -14.84277 -14.59395 -14.46747 -14.36849 -13.77790 -13.64949 -13.50086 -13.39765 -13.26130 -13.13359 -12.89328 -12.56585 -12.51586 -12.21759 -12.15606 -12.09682 -12.04782 -11.82742 -11.43728 -11.20188 -10.94441 -10.80925 -10.62691 -10.51507 -10.15241 -10.09475 -9.92699 -9.85064 -9.81511 -9.49634 -9.44119 -9.12434 -8.92173 -8.42913 -8.35173 -6.49782 -5.72176 -3.26424 0.63936 1.03132 2.69503 3.09128 3.43467 3.50535 3.55830 3.56624 3.97988 4.42843 4.44922 4.55278 4.57532 4.82257 5.08212 5.12190 5.13939 5.23392 5.25081 5.30891 5.38239 5.44515 5.45283 5.53330 5.57634 5.64577 5.68410 5.72057 5.79217 5.84099 5.94160 5.99756 6.00720 6.06267 6.10287 6.14698 6.24570 6.36125 6.44340 6.49246 6.58346 6.68853 6.78962 6.81421 7.10737 7.22841 7.50795 7.62734 7.79565 7.91204 8.21691 8.43771 8.63682 9.25783 9.89116 10.45300 11.31119 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.003119 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.235015 B = 8975.904341 C = 9130.036405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.146 3.854 3 C -0.188 4.188 4 C -0.037 4.037 5 C -0.183 4.183 6 C 0.566 3.434 7 O -0.537 6.537 8 N -0.594 5.594 9 C 0.104 3.896 10 C -0.138 4.138 11 C 0.178 3.822 12 N -0.571 5.571 13 C -0.236 4.236 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.148 3.852 22 C 0.059 3.941 23 O -0.544 6.544 24 C -0.133 4.133 25 C 0.112 3.888 26 C 0.188 3.812 27 C -0.125 4.125 28 N -0.488 5.488 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.349 0.651 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 8.545 -9.436 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.207 4.207 4 C -0.063 4.063 5 C -0.188 4.188 6 C 0.353 3.647 7 O -0.416 6.416 8 N -0.326 5.326 9 C -0.019 4.019 10 C -0.178 4.178 11 C 0.070 3.930 12 N -0.289 5.289 13 C -0.366 4.366 14 H 0.071 0.929 15 C -0.182 4.182 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.021 3.979 22 C -0.022 4.022 23 O -0.345 6.345 24 C -0.172 4.172 25 C -0.011 4.011 26 C 0.049 3.951 27 C -0.182 4.182 28 N -0.199 5.199 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.192 0.808 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.455 6.875 -10.040 18.895 hybrid contribution -0.058 0.773 1.107 1.351 sum -14.513 7.648 -8.933 18.680 Atomic orbital electron populations 1.20762 0.88597 1.03585 1.03351 1.21468 0.97172 0.88272 0.92269 1.21838 0.94400 0.99432 1.05064 1.21721 0.94501 0.97217 0.92870 1.20742 0.94807 0.95013 1.08211 1.18043 0.86100 0.79516 0.81005 1.90722 1.70971 1.40059 1.39838 1.48092 1.07648 1.47283 1.29595 1.22090 0.96703 0.94919 0.88223 1.22435 0.99111 1.02697 0.93606 1.20307 0.90645 0.95210 0.86851 1.43679 1.63306 1.08799 1.13159 1.18691 0.95681 0.91528 1.30682 0.92859 1.25063 0.94635 0.97456 1.01015 1.69997 0.98199 1.43285 1.42134 0.86446 0.77763 0.82182 0.81178 1.21688 1.21755 1.20401 1.20947 0.92754 0.89996 0.94194 1.23113 0.95533 0.93238 0.90282 1.86857 1.58284 1.38376 1.50986 1.22293 1.00680 1.02282 0.91992 1.21817 0.77653 1.01476 1.00118 1.21350 0.88553 0.95122 0.90043 1.21061 1.01623 0.91543 1.03966 1.67446 1.08980 1.29099 1.14349 0.90052 0.90547 0.90303 0.84299 0.84233 0.91679 0.90517 0.91213 0.91487 0.93630 0.93842 0.88356 0.94571 0.96285 0.96020 0.80810 0.90935 0.90827 0.89511 0.92004 0.89997 0.90309 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.16 36.01 0.37 -0.40 16 2 C 0.15 1.58 6.78 -82.51 -0.56 1.02 16 3 C -0.19 -1.77 9.72 -39.50 -0.38 -2.16 16 4 C -0.04 -0.40 7.71 -38.87 -0.30 -0.70 16 5 C -0.18 -2.52 4.80 -104.82 -0.50 -3.03 16 6 C 0.57 8.95 6.73 -12.33 -0.08 8.87 16 7 O -0.54 -9.92 14.26 5.32 0.08 -9.84 16 8 N -0.59 -8.88 2.97 -173.62 -0.51 -9.40 16 9 C 0.10 1.38 5.40 -3.48 -0.02 1.36 16 10 C -0.14 -2.32 5.31 -26.39 -0.14 -2.46 16 11 C 0.18 3.35 2.59 -67.89 -0.18 3.17 16 12 N -0.57 -13.13 2.31 -165.61 -0.38 -13.51 16 13 C -0.24 -6.21 7.99 -15.06 -0.12 -6.33 16 14 H 0.05 1.45 6.91 -52.48 -0.36 1.09 16 15 C 0.02 0.49 4.90 -17.43 -0.09 0.40 16 16 N -0.89 -25.37 11.60 55.49 0.64 -24.72 16 17 Si 0.89 22.24 29.60 -169.99 -5.03 17.20 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.15 3.29 5.56 -4.04 -0.02 3.26 16 22 C 0.06 1.10 7.39 37.16 0.27 1.37 16 23 O -0.54 -10.97 13.39 -35.23 -0.47 -11.44 16 24 C -0.13 -2.50 5.31 -26.61 -0.14 -2.64 16 25 C 0.11 1.74 6.44 -3.71 -0.02 1.72 16 26 C 0.19 2.68 6.82 -82.18 -0.56 2.12 16 27 C -0.12 -1.71 9.74 36.01 0.35 -1.36 16 28 N -0.49 -6.57 10.17 -5.42 -0.06 -6.63 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.23 7.46 -52.48 -0.39 0.84 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.94 5.13 -51.93 -0.27 0.68 16 36 H 0.07 1.36 7.07 -51.93 -0.37 1.00 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.10 2.58 5.66 -51.93 -0.29 2.28 16 41 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 42 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.35 5.06 9.12 45.56 0.42 5.48 16 45 H 0.07 1.59 7.71 -51.93 -0.40 1.19 16 46 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.10 1.54 5.59 -51.93 -0.29 1.24 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -32.69 402.38 -9.15 -41.84 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.35 Total: 6.22 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.13 Total: 4.21 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.31 Total: -54.26 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.40 Total: -21.28 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.69 -9.15 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098570449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.299 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds