Wall clock time and date at job start Wed Apr 1 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38350 * 119.45583 * 2 1 4 4 C 1.38357 * 119.30185 * 179.71833 * 3 2 1 5 5 C 1.40029 * 118.28463 * 0.53900 * 4 3 2 6 6 C 1.47849 * 120.55531 * 179.75808 * 5 4 3 7 7 O 1.21554 * 119.99497 * 229.66528 * 6 5 4 8 8 N 1.34770 * 120.00057 * 49.66518 * 6 5 4 9 9 C 1.46929 * 120.63152 * 4.75236 * 8 6 5 10 10 C 1.53624 * 108.54095 * 126.37057 * 9 8 6 11 11 C 1.53039 * 109.24119 * 54.85826 * 10 9 8 12 12 N 1.46505 * 109.46063 * 178.49138 * 11 10 9 13 13 C 1.36932 * 120.00162 * 60.06393 * 12 11 10 14 14 H 1.08004 * 120.00123 * 321.39641 * 13 12 11 15 15 C 1.38810 * 120.00447 * 141.39262 * 13 12 11 16 16 N 1.31627 * 119.99417 * 339.18715 * 15 13 12 17 17 Si 1.86793 * 120.00411 * 159.18123 * 15 13 12 18 18 H 1.48497 * 109.46975 * 90.00494 * 17 15 13 19 19 H 1.48501 * 109.47195 * 209.99988 * 17 15 13 20 20 H 1.48496 * 109.47350 * 330.00320 * 17 15 13 21 21 C 1.46497 * 119.99919 * 240.06924 * 12 11 10 22 22 C 1.53003 * 109.47128 * 84.55677 * 21 12 11 23 23 O 1.42901 * 109.47223 * 65.00254 * 22 21 12 24 24 C 1.53041 * 109.53781 * 298.50935 * 11 10 9 25 25 C 1.46924 * 120.62879 * 185.03782 * 8 6 5 26 26 C 1.39515 * 118.88278 * 359.48394 * 5 4 3 27 27 C 1.50699 * 119.71406 * 180.23348 * 26 5 4 28 28 N 1.31688 * 120.56827 * 0.24895 * 26 5 4 29 29 H 1.09002 * 109.47443 * 269.97712 * 1 2 3 30 30 H 1.08997 * 109.47212 * 29.98512 * 1 2 3 31 31 H 1.09005 * 109.46792 * 149.98463 * 1 2 3 32 32 H 1.07996 * 120.35402 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.85904 * 180.27124 * 4 3 2 34 34 H 1.08996 * 109.58749 * 246.20565 * 9 8 6 35 35 H 1.08999 * 109.58363 * 6.62666 * 9 8 6 36 36 H 1.08994 * 109.63687 * 294.86563 * 10 9 8 37 37 H 1.09000 * 109.42954 * 174.72600 * 10 9 8 38 38 H 1.09003 * 109.44936 * 58.52441 * 11 10 9 39 39 H 0.96996 * 119.99538 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47037 * 204.55426 * 21 12 11 41 41 H 1.08999 * 109.47461 * 324.55829 * 21 12 11 42 42 H 1.09007 * 109.46744 * 185.00042 * 22 21 12 43 43 H 1.09000 * 109.47318 * 305.00001 * 22 21 12 44 44 H 0.96693 * 113.99820 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.49626 * 301.41350 * 24 11 10 46 46 H 1.09004 * 109.52240 * 181.33823 * 24 11 10 47 47 H 1.08998 * 109.58716 * 353.36745 * 25 8 6 48 48 H 1.08997 * 109.59095 * 113.65616 * 25 8 6 49 49 H 1.08998 * 109.47297 * 88.04918 * 27 26 5 50 50 H 1.09005 * 109.46755 * 208.04595 * 27 26 5 51 51 H 1.09000 * 109.47113 * 328.04553 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0059 5 6 4.2312 -0.0339 0.0001 6 6 5.7083 -0.0964 0.0007 7 8 6.2871 -0.7989 -0.8050 8 7 6.4130 0.6254 0.8944 9 6 5.7278 1.3974 1.9401 10 6 6.3081 0.9943 3.3042 11 6 7.8271 1.1789 3.2806 12 7 8.3816 0.8300 4.5911 13 6 8.2105 -0.4325 5.0928 14 1 7.2739 -0.9498 4.9456 15 6 9.2407 -1.0477 5.7906 16 7 10.4805 -0.6341 5.6339 17 14 8.8679 -2.4623 6.9522 18 1 8.9392 -3.7455 6.2083 19 1 9.8631 -2.4732 8.0543 20 1 7.5052 -2.2928 7.5173 21 6 9.1190 1.8319 5.3647 22 6 8.1328 2.6876 6.1624 23 8 7.4714 1.8728 7.1323 24 6 8.4366 0.2699 2.2108 25 6 7.8807 0.6603 0.8377 26 6 3.4716 -1.2042 -0.0003 27 6 4.1628 -2.5433 -0.0012 28 7 2.1559 -1.1487 -0.0003 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6443 2.1381 -0.0004 33 1 4.1273 2.1266 0.0105 34 1 5.8878 2.4624 1.7721 35 1 4.6605 1.1779 1.9161 36 1 6.0716 -0.0499 3.5087 37 1 5.8770 1.6245 4.0821 38 1 8.0629 2.2181 3.0515 39 1 11.2004 -1.0637 6.1218 40 1 9.8024 1.3308 6.0502 41 1 9.6868 2.4690 4.6865 42 1 8.6728 3.4883 6.6679 43 1 7.3949 3.1180 5.4854 44 1 6.8297 2.3506 7.6754 45 1 8.1801 -0.7674 2.4256 46 1 9.5206 0.3840 2.2104 47 1 8.2343 -0.0456 0.0863 48 1 8.2127 1.6658 0.5793 49 1 4.3608 -2.8507 1.0257 50 1 3.5234 -3.2819 -0.4846 51 1 5.1042 -2.4659 -0.5452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098570449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:17 Heat of formation + Delta-G solvation = -48.056722 kcal Electronic energy + Delta-G solvation = -32000.375238 eV Core-core repulsion = 27899.444562 eV Total energy + Delta-G solvation = -4100.930676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02270 -40.52782 -39.03896 -37.66300 -36.27026 -34.68022 -34.31670 -33.53184 -32.04227 -31.85886 -30.05815 -29.47405 -28.31202 -26.49331 -24.97753 -24.27642 -23.65394 -23.10370 -22.26943 -21.58571 -20.39861 -18.70754 -18.16656 -17.99079 -17.72486 -17.20634 -16.71771 -16.48196 -16.07668 -16.06924 -15.63291 -15.59347 -15.41456 -14.96540 -14.69463 -14.52981 -14.37195 -14.20961 -14.12975 -14.00679 -13.71037 -13.41776 -13.22624 -13.09307 -13.03351 -13.00054 -12.95267 -12.78088 -12.75289 -12.57630 -12.37448 -12.13072 -11.83884 -11.63022 -11.50075 -11.18893 -11.12540 -10.77555 -10.60079 -10.47147 -10.38144 -9.83302 -9.64847 -8.43120 -7.75882 -5.32162 -0.26670 0.18968 1.40951 1.44281 1.52494 1.53361 1.95564 2.54762 2.65345 3.13240 3.34221 3.38732 3.57423 3.68059 3.74103 3.85670 3.94405 4.04052 4.13421 4.21445 4.31406 4.41452 4.44054 4.52960 4.55607 4.59361 4.60088 4.60837 4.70160 4.74334 4.76435 4.82282 4.82744 4.89463 4.93200 4.98681 5.03833 5.10020 5.12974 5.16273 5.19584 5.24835 5.44283 5.61336 5.63789 5.66617 5.75386 5.83368 6.32231 6.55579 6.91227 7.02192 7.23273 7.30516 7.98435 8.46896 9.21466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.003119 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.235015 B = 8975.904341 C = 9130.036405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.136 3.864 3 C -0.173 4.173 4 C -0.033 4.033 5 C -0.203 4.203 6 C 0.565 3.435 7 O -0.574 6.574 8 N -0.595 5.595 9 C 0.113 3.887 10 C -0.127 4.127 11 C 0.174 3.826 12 N -0.583 5.583 13 C -0.221 4.221 14 H 0.038 0.962 15 C -0.032 4.032 16 N -0.919 5.919 17 Si 0.938 3.062 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.279 1.279 21 C 0.142 3.858 22 C 0.068 3.932 23 O -0.578 6.578 24 C -0.121 4.121 25 C 0.123 3.877 26 C 0.164 3.836 27 C -0.120 4.120 28 N -0.511 5.511 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.245 0.755 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.375 0.625 45 H 0.028 0.972 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.906 12.218 -10.041 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.002 4.002 3 C -0.192 4.192 4 C -0.059 4.059 5 C -0.208 4.208 6 C 0.353 3.647 7 O -0.455 6.455 8 N -0.326 5.326 9 C -0.010 4.010 10 C -0.167 4.167 11 C 0.068 3.932 12 N -0.303 5.303 13 C -0.352 4.352 14 H 0.055 0.945 15 C -0.228 4.228 16 N -0.565 5.565 17 Si 0.768 3.232 18 H -0.219 1.219 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.016 3.984 22 C -0.011 4.011 23 O -0.383 6.383 24 C -0.162 4.162 25 C 0.000 4.000 26 C 0.026 3.974 27 C -0.178 4.178 28 N -0.223 5.223 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.200 0.800 33 H 0.185 0.815 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.221 0.779 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.512 10.578 -10.631 23.056 hybrid contribution 0.769 -0.328 1.277 1.526 sum -16.743 10.251 -9.354 21.746 Atomic orbital electron populations 1.20884 0.86064 1.04793 1.04326 1.22199 0.98928 0.88140 0.90934 1.22296 0.93874 1.00542 1.02490 1.22061 0.95363 0.96768 0.91719 1.20632 0.93285 0.96386 1.10497 1.18422 0.87129 0.78607 0.80495 1.90700 1.71959 1.41407 1.41446 1.48146 1.07233 1.47366 1.29846 1.22183 0.96981 0.96601 0.85197 1.22249 0.97463 1.00615 0.96381 1.20523 0.91746 0.96344 0.84634 1.43856 1.63487 1.07979 1.14991 1.18687 0.94521 0.92574 1.29433 0.94454 1.25544 0.94790 0.99530 1.02916 1.70097 0.98522 1.44547 1.43303 0.85747 0.77221 0.80425 0.79795 1.21937 1.22026 1.20435 1.20920 0.93290 0.90080 0.94158 1.22895 0.95379 0.92504 0.90363 1.86776 1.59402 1.40241 1.51861 1.22111 0.99614 0.99882 0.94548 1.21636 0.78346 1.02815 0.97212 1.21321 0.89292 0.95136 0.91633 1.20938 1.00993 0.92621 1.03207 1.67451 1.08490 1.30983 1.15338 0.89002 0.87561 0.90936 0.80019 0.81504 0.87619 0.89011 0.95041 0.90620 0.90832 0.94565 0.92626 0.93328 0.93692 0.93622 0.77903 0.95316 0.92877 0.90938 0.88612 0.90813 0.89444 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.16 71.24 0.72 -0.40 16 2 C 0.14 2.51 6.78 42.57 0.29 2.80 16 3 C -0.17 -2.46 9.72 22.32 0.22 -2.24 16 4 C -0.03 -0.60 7.71 22.73 0.18 -0.42 16 5 C -0.20 -5.35 4.80 -19.99 -0.10 -5.44 16 6 C 0.56 17.66 6.73 86.79 0.58 18.25 16 7 O -0.57 -21.88 14.26 -3.88 -0.06 -21.94 16 8 N -0.59 -16.90 2.97 -821.49 -2.44 -19.33 16 9 C 0.11 2.59 5.40 86.51 0.47 3.06 16 10 C -0.13 -4.05 5.31 30.82 0.16 -3.89 16 11 C 0.17 6.37 2.59 45.02 0.12 6.49 16 12 N -0.58 -26.89 2.31 -677.88 -1.57 -28.45 16 13 C -0.22 -11.96 7.99 84.03 0.67 -11.29 16 14 H 0.04 2.13 6.91 -2.91 -0.02 2.11 16 15 C -0.03 -1.79 4.90 84.86 0.42 -1.37 16 16 N -0.92 -54.19 11.60 21.65 0.25 -53.94 16 17 Si 0.94 47.19 29.60 68.60 2.03 49.22 16 18 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 19 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 20 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 21 C 0.14 6.22 5.56 86.38 0.48 6.70 16 22 C 0.07 2.37 7.39 71.98 0.53 2.90 16 23 O -0.58 -22.30 13.39 -148.98 -2.00 -24.30 16 24 C -0.12 -4.68 5.31 30.67 0.16 -4.51 16 25 C 0.12 3.73 6.44 86.36 0.56 4.28 16 26 C 0.16 4.67 6.82 42.89 0.29 4.97 16 27 C -0.12 -3.50 9.74 71.24 0.69 -2.81 16 28 N -0.51 -13.24 10.17 -171.07 -1.74 -14.98 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.53 8.07 -2.39 -0.02 0.51 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.17 2.01 7.46 -2.91 -0.02 1.99 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.91 5.13 -2.39 -0.01 1.90 16 36 H 0.03 1.23 7.07 -2.39 -0.02 1.22 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.32 7.87 -2.39 -0.02 2.30 16 39 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.06 2.97 5.66 -2.39 -0.01 2.96 16 41 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 42 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.37 9.93 9.12 -74.06 -0.68 9.25 16 45 H 0.03 1.32 7.71 -2.39 -0.02 1.30 16 46 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.07 2.44 7.00 -2.39 -0.02 2.42 16 48 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 51 H 0.08 2.68 5.59 -2.39 -0.01 2.67 16 Total: -1.00 -76.75 402.38 1.20 -75.55 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.27 Total: 21.10 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.45 Total: 17.07 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.49 Total: -116.71 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.05 Total: -46.24 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -76.75 1.20 -75.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098570449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.494 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds