Wall clock time and date at job start Wed Apr 1 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51265 * 120.83818 * 2 1 4 4 C 1.53236 * 108.53501 * 231.34797 * 3 2 1 5 5 C 1.52953 * 109.41342 * 305.39637 * 4 3 2 6 6 C 1.50704 * 109.41678 * 183.69827 * 5 4 3 7 7 O 1.21282 * 119.99140 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00669 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00209 * 179.97438 * 8 6 5 10 10 H 1.09000 * 115.51689 * 350.41632 * 9 8 6 11 11 C 1.53002 * 117.44185 * 204.99914 * 9 8 6 12 12 H 1.08998 * 119.52681 * 4.08791 * 11 9 8 13 13 C 1.54383 * 118.12967 * 159.12979 * 11 9 8 14 14 N 1.48560 * 104.59338 * 87.22581 * 13 11 9 15 15 C 1.46899 * 111.00265 * 200.96059 * 14 13 11 16 16 C 1.50701 * 109.47527 * 170.00245 * 15 14 13 17 17 O 1.21291 * 119.99562 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00289 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00073 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00273 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99611 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00368 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47031 * 120.00121 * 23 21 19 26 26 H 1.48498 * 109.47244 * 240.00336 * 23 21 19 27 27 C 1.48555 * 104.22568 * 320.52079 * 14 13 11 28 28 C 1.52998 * 117.44287 * 135.77289 * 9 8 6 29 29 H 1.09004 * 119.52931 * 355.90227 * 28 9 8 30 30 C 1.52955 * 109.82147 * 63.58733 * 5 4 3 31 31 C 1.51269 * 120.84952 * 180.02562 * 2 1 3 32 32 H 1.08003 * 120.00016 * 179.97438 * 1 2 3 33 33 H 1.08007 * 120.00145 * 359.97438 * 1 2 3 34 34 H 1.08999 * 109.61868 * 111.64104 * 3 2 1 35 35 H 1.08999 * 109.64238 * 351.06554 * 3 2 1 36 36 H 1.09002 * 109.48487 * 185.40713 * 4 3 2 37 37 H 1.08999 * 109.47961 * 65.37964 * 4 3 2 38 38 H 1.09007 * 109.41690 * 303.55367 * 5 4 3 39 39 H 0.97002 * 119.99715 * 359.97438 * 8 6 5 40 40 H 1.09000 * 110.41213 * 206.00477 * 13 11 9 41 41 H 1.09001 * 110.40600 * 328.45169 * 13 11 9 42 42 H 1.08997 * 109.47209 * 290.00885 * 15 14 13 43 43 H 1.08998 * 109.46739 * 50.00139 * 15 14 13 44 44 H 0.97000 * 119.99524 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00111 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.41675 * 158.25800 * 27 14 13 47 47 H 1.08999 * 110.41356 * 280.70322 * 27 14 13 48 48 H 1.09004 * 109.47741 * 56.38109 * 30 5 4 49 49 H 1.08995 * 109.48464 * 176.40608 * 30 5 4 50 50 H 1.09008 * 109.62116 * 8.92294 * 31 2 1 51 51 H 1.08990 * 109.78337 * 248.45019 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0854 1.2988 0.0000 4 6 3.1143 1.2519 -1.1346 5 6 3.9805 0.0003 -0.9840 6 6 5.0500 0.0005 -2.0457 7 8 5.1120 0.9117 -2.8436 8 7 5.9375 -1.0118 -2.1086 9 6 6.9768 -1.0118 -3.1410 10 1 6.8696 -0.2520 -3.9152 11 6 7.5579 -2.3648 -3.5566 12 1 7.1448 -3.2799 -3.1324 13 6 8.2598 -2.4653 -4.9279 14 7 9.6672 -2.0739 -4.6576 15 6 10.3392 -1.6407 -5.8900 16 6 11.6706 -1.0241 -5.5461 17 8 12.0251 -0.9531 -4.3884 18 7 12.4674 -0.5517 -6.5250 19 6 13.6788 0.0087 -6.2123 20 1 13.9949 0.0712 -5.1814 21 6 14.5007 0.4953 -7.2216 22 7 14.1163 0.4188 -8.4759 23 14 16.1510 1.2595 -6.7953 24 1 16.3467 1.2260 -5.3236 25 1 17.2372 0.4923 -7.4563 26 1 16.1813 2.6672 -7.2672 27 6 9.5549 -0.9524 -3.6900 28 6 8.3973 -1.3843 -2.7117 29 1 8.6090 -1.5696 -1.6585 30 6 3.1142 -1.2513 -1.1353 31 6 2.0857 -1.2987 -0.0006 32 1 -0.5400 -0.9353 -0.0004 33 1 -0.5401 0.9353 0.0004 34 1 2.5981 1.4189 0.9543 35 1 1.4025 2.1332 -0.1594 36 1 3.7461 2.1389 -1.0894 37 1 2.5968 1.2226 -2.0935 38 1 4.4477 -0.0007 0.0008 39 1 5.8880 -1.7404 -1.4701 40 1 8.2150 -3.4874 -5.3040 41 1 7.8039 -1.7769 -5.6396 42 1 10.4944 -2.5010 -6.5410 43 1 9.7194 -0.9047 -6.4022 44 1 12.1837 -0.6082 -7.4509 45 1 14.6897 0.7589 -9.1805 46 1 10.4851 -0.8354 -3.1339 47 1 9.3017 -0.0273 -4.2079 48 1 2.5966 -1.2213 -2.0941 49 1 3.7461 -2.1383 -1.0908 50 1 1.4026 -2.1330 -0.1602 51 1 2.5983 -1.4226 0.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114782768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:42 Heat of formation + Delta-G solvation = -24.818790 kcal Electronic energy + Delta-G solvation = -29677.310439 eV Core-core repulsion = 25577.387436 eV Total energy + Delta-G solvation = -4099.923003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70002 -39.71701 -38.26804 -37.77533 -35.14556 -33.92756 -33.43349 -32.35951 -31.45070 -31.22562 -28.13236 -27.77760 -26.96405 -24.68659 -23.44753 -23.02408 -21.82644 -21.01640 -20.33683 -20.17476 -19.15123 -18.85120 -17.84274 -17.46477 -16.92582 -15.87050 -15.49932 -15.31953 -15.30741 -15.06908 -14.69378 -14.53737 -14.45906 -13.95023 -13.88133 -13.73003 -13.48188 -13.43440 -13.04213 -12.91800 -12.79466 -12.35734 -12.15033 -11.98398 -11.85918 -11.81430 -11.54639 -11.52949 -11.29116 -11.19420 -11.05224 -10.98632 -10.85180 -10.64222 -10.34128 -10.23564 -10.07251 -9.96178 -9.50907 -9.45111 -8.90180 -8.40813 -8.03855 -7.92911 -6.42432 -3.83227 1.81762 2.32382 2.72923 3.16262 3.27062 3.34165 3.64449 3.88289 4.05990 4.08965 4.19775 4.26467 4.32869 4.54324 4.60519 4.62291 4.69944 4.77238 4.83747 4.89670 4.94421 4.99373 5.07725 5.19130 5.24333 5.25074 5.27341 5.30915 5.41041 5.48295 5.55459 5.60643 5.62148 5.73534 5.74602 5.77337 5.78141 5.89910 5.92941 6.05404 6.14215 6.21942 6.25253 6.34495 6.43756 6.62884 7.13364 7.20929 7.24830 7.55066 7.96599 8.05328 8.60431 9.17162 9.52825 10.04180 10.75282 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.001627 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.351613 B =17202.652312 C =17710.482009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.097 4.097 5 C -0.105 4.105 6 C 0.520 3.480 7 O -0.533 6.533 8 N -0.700 5.700 9 C 0.100 3.900 10 H 0.132 0.868 11 C -0.171 4.171 12 H 0.115 0.885 13 C 0.060 3.940 14 N -0.487 5.487 15 C 0.034 3.966 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.561 5.561 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.067 3.933 28 C -0.162 4.162 29 H 0.120 0.880 30 C -0.107 4.107 31 C -0.084 4.084 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.401 0.599 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.121 0.879 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.298 -4.800 14.567 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.134 4.134 5 C -0.126 4.126 6 C 0.307 3.693 7 O -0.409 6.409 8 N -0.349 5.349 9 C -0.007 4.007 10 H 0.150 0.850 11 C -0.191 4.191 12 H 0.133 0.867 13 C -0.068 4.068 14 N -0.211 5.211 15 C -0.098 4.098 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.197 5.197 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.060 4.060 28 C -0.183 4.183 29 H 0.138 0.862 30 C -0.145 4.145 31 C -0.122 4.122 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.235 0.765 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.139 0.861 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.581 -4.456 14.774 29.875 hybrid contribution 0.179 0.482 -0.573 0.770 sum -25.402 -3.974 14.201 29.372 Atomic orbital electron populations 1.23652 0.95004 1.01897 1.02812 1.21978 0.95113 0.95812 0.99263 1.20853 0.97595 0.94873 0.99071 1.21362 0.96543 0.96512 0.99026 1.21340 0.94810 0.97943 0.98527 1.20679 0.81745 0.81395 0.85502 1.90726 1.73085 1.35420 1.41662 1.45343 1.30880 1.25219 1.33431 1.21875 0.86732 0.98561 0.93510 0.85011 1.23781 1.03523 0.93977 0.97778 0.86661 1.22686 0.88513 1.01614 0.93971 1.65374 1.12394 1.33510 1.09826 1.22102 0.95486 0.99911 0.92301 1.19683 0.86606 0.84549 0.86432 1.90448 1.75138 1.61659 1.19336 1.41847 1.17127 1.52499 1.08241 1.19759 0.93302 1.34548 0.95266 0.87797 1.25273 1.00073 0.97860 0.94718 1.69621 1.38461 1.46868 0.99229 0.85794 0.81196 0.78439 0.78874 1.19205 1.20737 1.20766 1.23425 0.98254 0.91303 0.93060 1.24810 0.90776 1.03125 0.99567 0.86173 1.21550 0.97158 0.96029 0.99788 1.20800 0.97471 0.95077 0.98804 0.88489 0.88428 0.90753 0.90854 0.90609 0.91003 0.88278 0.76466 0.89534 0.93660 0.88941 0.93177 0.77427 0.91895 0.86147 0.94061 0.91005 0.91134 0.90870 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 13.99 29.01 0.41 -0.72 16 2 C -0.12 -0.73 5.35 -100.51 -0.54 -1.27 16 3 C -0.09 -0.53 6.03 -27.48 -0.17 -0.69 16 4 C -0.10 -0.76 4.54 -26.63 -0.12 -0.88 16 5 C -0.10 -0.75 2.42 -91.82 -0.22 -0.97 16 6 C 0.52 5.52 7.15 -10.99 -0.08 5.44 16 7 O -0.53 -8.04 15.51 5.56 0.09 -7.96 16 8 N -0.70 -6.45 5.43 -53.81 -0.29 -6.74 16 9 C 0.10 1.18 5.92 -67.93 -0.40 0.77 16 10 H 0.13 1.87 7.40 -51.93 -0.38 1.49 16 11 C -0.17 -1.93 6.97 -89.23 -0.62 -2.55 16 12 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.06 0.78 6.30 -2.18 -0.01 0.77 16 14 N -0.49 -8.24 5.34 -229.23 -1.22 -9.46 16 15 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 16 C 0.44 10.43 7.50 -10.99 -0.08 10.34 16 17 O -0.58 -15.40 13.24 5.55 0.07 -15.33 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.07 1.15 5.17 -0.39 0.00 1.15 16 28 C -0.16 -2.11 7.33 -87.45 -0.64 -2.75 16 29 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 30 C -0.11 -0.60 5.14 -26.64 -0.14 -0.73 16 31 C -0.08 -0.41 6.03 -27.49 -0.17 -0.58 16 32 H 0.10 0.48 7.92 -52.48 -0.42 0.06 16 33 H 0.10 0.51 7.92 -52.48 -0.42 0.09 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 36 H 0.08 0.67 8.00 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.40 2.49 8.17 -40.82 -0.33 2.16 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.58 7.82 -51.93 -0.41 0.17 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.12 2.45 6.05 -51.93 -0.31 2.14 16 47 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.29 7.44 -51.93 -0.39 -0.09 16 50 H 0.07 0.32 7.89 -51.92 -0.41 -0.09 16 51 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -32.86 408.30 -10.97 -43.82 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.35 Total: 11.65 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.05 Total: -0.06 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.85 Total: -54.36 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.86 -10.97 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114782768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.005 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds