Wall clock time and date at job start Wed Apr 1 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51265 * 120.83818 * 2 1 4 4 C 1.53236 * 108.53501 * 231.34797 * 3 2 1 5 5 C 1.52953 * 109.41342 * 305.39637 * 4 3 2 6 6 C 1.50704 * 109.41678 * 183.69827 * 5 4 3 7 7 O 1.21282 * 119.99140 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00669 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00209 * 179.97438 * 8 6 5 10 10 H 1.09000 * 115.51689 * 350.41632 * 9 8 6 11 11 C 1.53002 * 117.44185 * 204.99914 * 9 8 6 12 12 H 1.08998 * 119.52681 * 4.08791 * 11 9 8 13 13 C 1.54383 * 118.12967 * 159.12979 * 11 9 8 14 14 N 1.48560 * 104.59338 * 87.22581 * 13 11 9 15 15 C 1.46899 * 111.00265 * 200.96059 * 14 13 11 16 16 C 1.50701 * 109.47527 * 170.00245 * 15 14 13 17 17 O 1.21291 * 119.99562 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00289 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00073 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00273 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99611 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00368 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47031 * 120.00121 * 23 21 19 26 26 H 1.48498 * 109.47244 * 240.00336 * 23 21 19 27 27 C 1.48555 * 104.22568 * 320.52079 * 14 13 11 28 28 C 1.52998 * 117.44287 * 135.77289 * 9 8 6 29 29 H 1.09004 * 119.52931 * 355.90227 * 28 9 8 30 30 C 1.52955 * 109.82147 * 63.58733 * 5 4 3 31 31 C 1.51269 * 120.84952 * 180.02562 * 2 1 3 32 32 H 1.08003 * 120.00016 * 179.97438 * 1 2 3 33 33 H 1.08007 * 120.00145 * 359.97438 * 1 2 3 34 34 H 1.08999 * 109.61868 * 111.64104 * 3 2 1 35 35 H 1.08999 * 109.64238 * 351.06554 * 3 2 1 36 36 H 1.09002 * 109.48487 * 185.40713 * 4 3 2 37 37 H 1.08999 * 109.47961 * 65.37964 * 4 3 2 38 38 H 1.09007 * 109.41690 * 303.55367 * 5 4 3 39 39 H 0.97002 * 119.99715 * 359.97438 * 8 6 5 40 40 H 1.09000 * 110.41213 * 206.00477 * 13 11 9 41 41 H 1.09001 * 110.40600 * 328.45169 * 13 11 9 42 42 H 1.08997 * 109.47209 * 290.00885 * 15 14 13 43 43 H 1.08998 * 109.46739 * 50.00139 * 15 14 13 44 44 H 0.97000 * 119.99524 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00111 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.41675 * 158.25800 * 27 14 13 47 47 H 1.08999 * 110.41356 * 280.70322 * 27 14 13 48 48 H 1.09004 * 109.47741 * 56.38109 * 30 5 4 49 49 H 1.08995 * 109.48464 * 176.40608 * 30 5 4 50 50 H 1.09008 * 109.62116 * 8.92294 * 31 2 1 51 51 H 1.08990 * 109.78337 * 248.45019 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0854 1.2988 0.0000 4 6 3.1143 1.2519 -1.1346 5 6 3.9805 0.0003 -0.9840 6 6 5.0500 0.0005 -2.0457 7 8 5.1120 0.9117 -2.8436 8 7 5.9375 -1.0118 -2.1086 9 6 6.9768 -1.0118 -3.1410 10 1 6.8696 -0.2520 -3.9152 11 6 7.5579 -2.3648 -3.5566 12 1 7.1448 -3.2799 -3.1324 13 6 8.2598 -2.4653 -4.9279 14 7 9.6672 -2.0739 -4.6576 15 6 10.3392 -1.6407 -5.8900 16 6 11.6706 -1.0241 -5.5461 17 8 12.0251 -0.9531 -4.3884 18 7 12.4674 -0.5517 -6.5250 19 6 13.6788 0.0087 -6.2123 20 1 13.9949 0.0712 -5.1814 21 6 14.5007 0.4953 -7.2216 22 7 14.1163 0.4188 -8.4759 23 14 16.1510 1.2595 -6.7953 24 1 16.3467 1.2260 -5.3236 25 1 17.2372 0.4923 -7.4563 26 1 16.1813 2.6672 -7.2672 27 6 9.5549 -0.9524 -3.6900 28 6 8.3973 -1.3843 -2.7117 29 1 8.6090 -1.5696 -1.6585 30 6 3.1142 -1.2513 -1.1353 31 6 2.0857 -1.2987 -0.0006 32 1 -0.5400 -0.9353 -0.0004 33 1 -0.5401 0.9353 0.0004 34 1 2.5981 1.4189 0.9543 35 1 1.4025 2.1332 -0.1594 36 1 3.7461 2.1389 -1.0894 37 1 2.5968 1.2226 -2.0935 38 1 4.4477 -0.0007 0.0008 39 1 5.8880 -1.7404 -1.4701 40 1 8.2150 -3.4874 -5.3040 41 1 7.8039 -1.7769 -5.6396 42 1 10.4944 -2.5010 -6.5410 43 1 9.7194 -0.9047 -6.4022 44 1 12.1837 -0.6082 -7.4509 45 1 14.6897 0.7589 -9.1805 46 1 10.4851 -0.8354 -3.1339 47 1 9.3017 -0.0273 -4.2079 48 1 2.5966 -1.2213 -2.0941 49 1 3.7461 -2.1383 -1.0908 50 1 1.4026 -2.1330 -0.1602 51 1 2.5983 -1.4226 0.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114782768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:41 Heat of formation + Delta-G solvation = -47.944194 kcal Electronic energy + Delta-G solvation = -29678.313232 eV Core-core repulsion = 25577.387436 eV Total energy + Delta-G solvation = -4100.925796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61877 -40.83613 -39.73336 -38.67119 -36.43467 -35.77905 -34.20368 -33.39125 -33.12301 -31.93734 -29.33465 -29.10251 -27.73172 -26.49411 -24.14788 -23.81328 -22.78976 -22.04926 -21.38946 -21.02659 -20.93644 -19.86196 -19.30412 -18.27293 -17.89950 -17.61055 -16.64837 -16.46169 -16.33791 -16.15307 -15.85091 -15.73341 -15.49095 -15.12421 -14.98350 -14.86870 -14.49271 -14.35263 -14.14800 -13.82682 -13.67449 -13.51336 -13.31388 -13.19373 -13.16964 -12.94851 -12.58355 -12.51322 -12.42334 -12.40571 -12.34264 -12.11372 -11.98420 -11.92891 -11.57869 -11.50457 -11.14074 -11.08568 -10.83538 -10.23531 -10.03349 -9.88740 -9.79797 -9.42179 -8.48670 -5.97428 1.35136 1.38869 1.40578 1.49012 1.54880 1.89034 2.00999 2.27218 2.64489 2.86385 3.18105 3.29528 3.51963 3.61497 3.66203 3.71008 3.79072 3.80023 4.05845 4.08975 4.14279 4.21891 4.24767 4.32169 4.38543 4.41309 4.47653 4.50039 4.51435 4.62539 4.63735 4.78124 4.81716 4.86364 4.97259 5.04361 5.06365 5.11397 5.13702 5.18044 5.21294 5.22987 5.33842 5.39678 5.44299 5.78233 5.80220 5.85626 6.01828 6.05532 6.47306 6.57861 7.10559 7.18833 7.52603 8.08205 8.69015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.001627 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.351613 B =17202.652312 C =17710.482009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.096 4.096 5 C -0.096 4.096 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.683 5.683 9 C 0.104 3.896 10 H 0.104 0.896 11 C -0.144 4.144 12 H 0.151 0.849 13 C 0.056 3.944 14 N -0.500 5.500 15 C 0.045 3.955 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.065 3.935 28 C -0.169 4.169 29 H 0.136 0.864 30 C -0.102 4.102 31 C -0.081 4.081 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.123 0.877 39 H 0.420 0.580 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.081 0.919 47 H 0.021 0.979 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.743 -6.762 15.650 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.133 4.133 3 C -0.120 4.120 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.305 3.695 7 O -0.465 6.465 8 N -0.333 5.333 9 C -0.003 4.003 10 H 0.122 0.878 11 C -0.163 4.163 12 H 0.169 0.831 13 C -0.071 4.071 14 N -0.225 5.225 15 C -0.087 4.087 16 C 0.225 3.775 17 O -0.500 6.500 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.063 4.063 28 C -0.190 4.190 29 H 0.154 0.846 30 C -0.140 4.140 31 C -0.118 4.118 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.258 0.742 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.039 0.961 48 H 0.075 0.925 49 H 0.111 0.889 50 H 0.101 0.899 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.054 -6.462 15.867 32.022 hybrid contribution 0.580 1.118 -0.910 1.554 sum -26.474 -5.344 14.957 30.872 Atomic orbital electron populations 1.23797 0.95146 1.02410 1.02498 1.22124 0.95371 0.96215 0.99562 1.20818 0.97156 0.95314 0.98668 1.21311 0.96757 0.96438 0.98878 1.21360 0.93828 0.98407 0.98089 1.21373 0.82104 0.80580 0.85417 1.90711 1.74460 1.37467 1.43850 1.45182 1.29588 1.25523 1.33009 1.21557 0.86607 0.98591 0.93547 0.87802 1.23881 1.01591 0.94691 0.96181 0.83120 1.22841 0.86184 1.02853 0.95241 1.65375 1.14997 1.32949 1.09132 1.21997 0.92499 1.00741 0.93441 1.20688 0.87969 0.83196 0.85600 1.90442 1.76351 1.62494 1.20742 1.41915 1.17016 1.53200 1.08745 1.19713 0.95112 1.36818 0.94639 0.90216 1.26056 1.03093 0.97652 0.94456 1.69681 1.39656 1.46956 0.99809 0.84855 0.77108 0.78000 0.78268 1.19770 1.19470 1.19695 1.23185 0.98277 0.91090 0.93718 1.24620 0.89808 1.04856 0.99669 0.84623 1.21543 0.97254 0.95737 0.99473 1.20824 0.97310 0.94610 0.99067 0.87610 0.88446 0.89642 0.90937 0.92331 0.93006 0.85904 0.74154 0.87083 0.93393 0.86583 0.91709 0.77027 0.91281 0.90104 0.96095 0.92463 0.88926 0.89924 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.99 67.78 0.95 -1.05 16 2 C -0.13 -1.35 5.35 -16.13 -0.09 -1.43 16 3 C -0.08 -0.91 6.03 30.11 0.18 -0.73 16 4 C -0.10 -1.49 4.54 30.66 0.14 -1.35 16 5 C -0.10 -1.20 2.42 -11.57 -0.03 -1.23 16 6 C 0.52 10.53 7.15 87.66 0.63 11.15 16 7 O -0.59 -18.21 15.51 -3.04 -0.05 -18.26 16 8 N -0.68 -11.12 5.43 -442.54 -2.40 -13.52 16 9 C 0.10 2.33 5.92 44.99 0.27 2.60 16 10 H 0.10 3.01 7.40 -2.39 -0.02 2.99 16 11 C -0.14 -2.82 6.97 -9.90 -0.07 -2.89 16 12 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 13 C 0.06 1.32 6.30 86.45 0.54 1.87 16 14 N -0.50 -16.61 5.34 -879.14 -4.69 -21.30 16 15 C 0.04 1.61 5.55 85.56 0.47 2.08 16 16 C 0.44 21.33 7.50 87.66 0.66 21.98 16 17 O -0.61 -34.06 13.24 -3.06 -0.04 -34.10 16 18 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 19 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.30 13.05 21.67 0.28 -50.02 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C 0.07 2.31 5.17 87.61 0.45 2.76 16 28 C -0.17 -4.22 7.33 -8.74 -0.06 -4.28 16 29 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 30 C -0.10 -0.86 5.14 30.65 0.16 -0.70 16 31 C -0.08 -0.55 6.03 30.10 0.18 -0.37 16 32 H 0.11 0.84 7.92 -2.91 -0.02 0.81 16 33 H 0.10 0.92 7.92 -2.91 -0.02 0.90 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.80 7.89 -2.39 -0.02 0.78 16 36 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.42 3.62 8.17 -92.71 -0.76 2.87 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 42 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.07 2.15 7.88 -2.39 -0.02 2.13 16 44 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.08 3.50 6.05 -2.39 -0.01 3.48 16 47 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 48 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.09 0.39 7.44 -2.39 -0.02 0.37 16 50 H 0.08 0.44 7.89 -2.38 -0.02 0.43 16 51 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -75.31 408.30 -1.38 -76.69 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.54 Total: 36.75 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.66 Total: 9.78 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -8.43 Total: -116.42 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.09 Total: -52.36 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -75.31 -1.38 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114782768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.745 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds