Wall clock time and date at job start Wed Apr 1 2020 04:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38125 * 119.96656 * 2 1 4 4 C 1.38892 * 119.92746 * 180.30019 * 3 2 1 5 5 N 1.39667 * 120.07511 * 179.70541 * 4 3 2 6 6 C 1.46502 * 120.00122 * 174.30342 * 5 4 3 7 7 C 1.46501 * 120.00062 * 354.30202 * 5 4 3 8 8 C 1.38938 * 119.84840 * 359.72041 * 4 3 2 9 9 C 1.38080 * 119.92458 * 0.02562 * 8 4 3 10 10 C 1.38273 * 119.96134 * 179.75024 * 2 1 3 11 11 C 1.50693 * 119.92243 * 359.97357 * 10 2 1 12 12 N 1.46509 * 109.47245 * 79.73086 * 11 10 2 13 13 C 1.34769 * 119.99971 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00284 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00011 * 179.97438 * 13 12 11 16 16 C 1.47419 * 125.64599 * 359.97438 * 15 13 12 17 17 C 1.54911 * 104.83361 * 155.90935 * 16 15 13 18 18 C 1.55149 * 101.58204 * 37.00858 * 17 16 15 19 19 O 1.42892 * 110.72058 * 83.03890 * 18 17 16 20 20 C 1.50702 * 110.72187 * 206.13952 * 18 17 16 21 21 H 1.08000 * 119.99747 * 357.55580 * 20 18 17 22 22 C 1.37879 * 120.00198 * 177.28319 * 20 18 17 23 23 N 1.31513 * 119.99638 * 0.27334 * 22 20 18 24 24 Si 1.86794 * 119.99899 * 180.27357 * 22 20 18 25 25 H 1.48497 * 109.47641 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47120 * 120.00275 * 24 22 20 27 27 H 1.48510 * 109.46922 * 239.99794 * 24 22 20 28 28 C 1.47315 * 125.61860 * 180.20467 * 15 13 12 29 29 H 1.09004 * 109.47249 * 270.24980 * 1 2 3 30 30 H 1.08995 * 109.47263 * 30.25022 * 1 2 3 31 31 H 1.09001 * 109.47454 * 150.25702 * 1 2 3 32 32 H 1.07993 * 120.03668 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47198 * 89.99452 * 6 5 4 34 34 H 1.09000 * 109.47653 * 209.99814 * 6 5 4 35 35 H 1.09003 * 109.47211 * 330.00070 * 6 5 4 36 36 H 1.08998 * 109.46938 * 5.05986 * 7 5 4 37 37 H 1.08997 * 109.46968 * 125.06255 * 7 5 4 38 38 H 1.09005 * 109.47227 * 245.05641 * 7 5 4 39 39 H 1.07997 * 120.03542 * 180.02562 * 8 4 3 40 40 H 1.08000 * 119.95948 * 180.02562 * 9 8 4 41 41 H 1.08998 * 109.47642 * 319.72640 * 11 10 2 42 42 H 1.09004 * 109.47104 * 199.72424 * 11 10 2 43 43 H 0.97003 * 119.99403 * 359.97438 * 12 11 10 44 44 H 1.09000 * 110.37058 * 37.06697 * 16 15 13 45 45 H 1.09004 * 110.37074 * 274.74906 * 16 15 13 46 46 H 1.09002 * 111.00303 * 278.93473 * 17 16 15 47 47 H 1.08994 * 111.00342 * 155.08486 * 17 16 15 48 48 H 0.96708 * 114.00361 * 182.43773 * 19 18 17 49 49 H 0.97007 * 119.99757 * 180.02562 * 23 22 20 50 50 H 1.08993 * 110.06625 * 61.67298 * 28 15 13 51 51 H 1.09006 * 109.84766 * 300.41927 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1957 -0.0063 5 7 4.2865 2.4038 -0.0125 6 6 5.7466 2.4044 0.1068 7 6 3.5614 3.6706 -0.1384 8 6 4.2765 -0.0099 -0.0067 9 6 3.5805 -1.2025 -0.0014 10 6 2.1975 -1.1979 0.0052 11 6 1.4414 -2.5014 0.0115 12 7 0.9828 -2.8066 -1.3461 13 6 0.2803 -3.9320 -1.5830 14 8 0.0268 -4.6940 -0.6701 15 7 -0.1420 -4.2125 -2.8318 16 6 0.0926 -3.3797 -4.0254 17 6 -0.0070 -4.3613 -5.2197 18 6 -1.1453 -5.3063 -4.7521 19 8 -2.4243 -4.7374 -5.0388 20 6 -1.0106 -6.6624 -5.3955 21 1 -0.2204 -6.8456 -6.1086 22 6 -1.8927 -7.6707 -5.0697 23 7 -2.8549 -7.4474 -4.2015 24 14 -1.7210 -9.3538 -5.8615 25 1 -0.5674 -9.3458 -6.7965 26 1 -1.4978 -10.3761 -4.8079 27 1 -2.9621 -9.6775 -6.6102 28 6 -0.9186 -5.3998 -3.2285 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 1.6570 2.1319 0.0004 33 1 6.1924 2.3507 -0.8865 34 1 6.0705 3.3202 0.6013 35 1 6.0636 1.5426 0.6942 36 1 2.4886 3.4780 -0.1249 37 1 3.8238 4.3236 0.6938 38 1 3.8323 4.1525 -1.0778 39 1 5.3564 -0.0141 -0.0112 40 1 4.1169 -2.1399 -0.0013 41 1 0.5811 -2.4193 0.6758 42 1 2.0960 -3.2995 0.3618 43 1 1.1848 -2.1985 -2.0743 44 1 1.0849 -2.9303 -3.9855 45 1 -0.6718 -2.6067 -4.1050 46 1 0.9256 -4.9095 -5.3537 47 1 -0.2851 -3.8372 -6.1340 48 1 -3.1700 -5.2717 -4.7327 49 1 -3.4753 -8.1570 -3.9719 50 1 -1.8777 -5.4095 -2.7108 51 1 -0.3583 -6.3045 -2.9920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118188334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:38 Heat of formation + Delta-G solvation = -36.921752 kcal Electronic energy + Delta-G solvation = -30663.014581 eV Core-core repulsion = 26562.566753 eV Total energy + Delta-G solvation = -4100.447827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.23507 -39.42492 -37.54930 -36.85708 -34.20834 -34.11413 -32.71962 -32.15709 -30.89332 -29.76904 -29.02743 -27.79991 -26.96953 -26.25164 -24.88578 -23.60319 -22.40509 -21.98212 -20.09204 -19.62608 -19.35472 -17.69129 -17.28438 -17.01276 -16.40782 -15.82013 -15.44459 -15.24766 -15.08044 -14.92609 -14.50852 -14.31978 -14.18128 -13.83334 -13.56745 -13.43306 -13.31853 -12.95660 -12.87493 -12.79870 -12.48702 -12.43246 -12.30729 -12.14907 -12.08668 -12.01753 -11.61264 -11.37921 -11.19909 -11.02947 -10.90563 -10.76692 -10.60648 -10.44236 -10.12452 -10.00886 -9.51296 -9.28548 -8.85481 -8.72714 -8.64057 -8.26895 -7.68484 -7.51516 -6.24975 -4.33089 1.27938 1.32509 2.79182 3.20909 3.25401 3.31843 3.35281 3.75131 3.83145 4.30072 4.50865 4.56962 4.62377 4.73566 4.83739 4.92050 4.94979 5.03062 5.13960 5.17625 5.19429 5.30603 5.31727 5.35358 5.44139 5.56508 5.64375 5.70937 5.76431 5.77527 5.82216 5.90974 5.97850 6.07641 6.14432 6.17886 6.31545 6.55904 6.62291 6.68927 6.77846 6.86646 6.92758 6.94126 7.05275 7.21965 7.31970 7.38070 7.72500 7.77617 8.07422 8.61343 8.71425 9.21703 9.34676 9.44443 10.82910 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002056 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.102173 B =13617.579601 C =13684.137802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.015 4.015 3 C -0.203 4.203 4 C 0.221 3.779 5 N -0.640 5.640 6 C 0.095 3.905 7 C 0.089 3.911 8 C -0.205 4.205 9 C -0.047 4.047 10 C -0.162 4.162 11 C 0.189 3.811 12 N -0.747 5.747 13 C 0.714 3.286 14 O -0.598 6.598 15 N -0.631 5.631 16 C 0.104 3.896 17 C -0.116 4.116 18 C 0.247 3.753 19 O -0.586 6.586 20 C -0.536 4.536 21 H 0.067 0.933 22 C 0.069 3.931 23 N -0.894 5.894 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.123 3.877 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.393 0.607 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.384 0.616 49 H 0.270 0.730 50 H 0.062 0.938 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.574 21.374 8.309 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.225 4.225 4 C 0.120 3.880 5 N -0.352 5.352 6 C -0.048 4.048 7 C -0.054 4.054 8 C -0.228 4.228 9 C -0.066 4.066 10 C -0.165 4.165 11 C 0.065 3.935 12 N -0.404 5.404 13 C 0.416 3.584 14 O -0.478 6.478 15 N -0.368 5.368 16 C -0.019 4.019 17 C -0.154 4.154 18 C 0.207 3.793 19 O -0.395 6.395 20 C -0.574 4.574 21 H 0.085 0.915 22 C -0.134 4.134 23 N -0.533 5.533 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.227 0.773 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.235 0.765 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.710 21.354 8.898 26.891 hybrid contribution -0.053 -0.958 -0.395 1.038 sum 13.657 20.396 8.502 25.976 Atomic orbital electron populations 1.20930 0.91048 1.03456 1.02676 1.19563 0.95772 0.91803 0.94520 1.20538 0.91882 0.97999 1.12122 1.17836 0.91126 0.85642 0.93438 1.46295 1.05466 1.03406 1.80048 1.21594 0.79697 1.02507 1.01041 1.21694 0.97959 0.84971 1.00744 1.20612 0.99496 0.90956 1.11697 1.20840 0.93231 0.97471 0.95066 1.19577 0.93589 0.94065 1.09225 1.19800 0.97446 0.92627 0.83600 1.45264 1.60354 1.24442 1.10390 1.15548 0.78890 0.81551 0.82383 1.90881 1.63364 1.50506 1.43014 1.48027 1.57490 1.26176 1.05131 1.22211 0.98946 0.94466 0.86288 1.22719 0.99507 0.96915 0.96241 1.19505 0.81263 0.90532 0.88031 1.86084 1.16925 1.52497 1.84001 1.21549 1.14953 0.95193 1.25734 0.91518 1.25079 0.94707 0.99380 0.94185 1.69659 1.16867 1.34231 1.32549 0.86351 0.78163 0.83211 0.79186 1.19620 1.20779 1.20788 1.22905 0.94258 0.84473 0.98264 0.90868 0.91597 0.90424 0.85895 0.93444 0.91689 0.91306 0.90296 0.92745 0.93038 0.86116 0.85839 0.91305 0.91539 0.77294 0.92683 0.92108 0.90584 0.90658 0.76518 0.92041 0.91952 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.26 36.00 0.33 -0.93 16 2 C -0.02 -0.17 5.88 -104.65 -0.62 -0.78 16 3 C -0.20 -2.02 8.97 -39.38 -0.35 -2.37 16 4 C 0.22 2.16 6.54 -83.79 -0.55 1.62 16 5 N -0.64 -5.04 3.41 -187.54 -0.64 -5.68 16 6 C 0.09 0.54 10.10 59.85 0.60 1.14 16 7 C 0.09 0.52 10.62 59.85 0.64 1.15 16 8 C -0.21 -2.01 9.16 -39.38 -0.36 -2.37 16 9 C -0.05 -0.50 9.66 -39.61 -0.38 -0.88 16 10 C -0.16 -1.88 5.25 -104.59 -0.55 -2.43 16 11 C 0.19 2.60 4.92 -5.19 -0.03 2.58 16 12 N -0.75 -11.66 4.82 -66.41 -0.32 -11.98 16 13 C 0.71 14.77 8.49 -86.92 -0.74 14.03 16 14 O -0.60 -14.72 16.67 5.29 0.09 -14.64 16 15 N -0.63 -13.33 3.33 -176.00 -0.59 -13.92 16 16 C 0.10 1.86 6.57 -2.53 -0.02 1.84 16 17 C -0.12 -2.33 6.23 -24.59 -0.15 -2.48 16 18 C 0.25 6.03 0.85 -89.94 -0.08 5.96 16 19 O -0.59 -14.85 13.08 -35.23 -0.46 -15.31 16 20 C -0.54 -14.12 8.11 -34.44 -0.28 -14.40 16 21 H 0.07 1.73 7.77 -52.49 -0.41 1.32 16 22 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 23 N -0.89 -24.06 10.96 55.43 0.61 -23.45 16 24 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.12 3.05 5.39 -2.90 -0.02 3.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.08 0.93 6.32 -51.93 -0.33 0.60 16 32 H 0.12 1.02 5.74 -52.49 -0.30 0.71 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.07 0.38 6.45 -51.93 -0.34 0.04 16 36 H 0.08 0.44 5.31 -51.93 -0.28 0.17 16 37 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.12 0.98 6.31 -52.49 -0.33 0.65 16 40 H 0.12 1.18 8.03 -52.49 -0.42 0.76 16 41 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 42 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 43 H 0.39 5.44 6.94 -40.82 -0.28 5.16 16 44 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 47 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 48 H 0.38 10.01 7.24 45.56 0.33 10.34 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 50 H 0.06 1.69 8.00 -51.93 -0.42 1.27 16 51 H 0.06 1.71 7.81 -51.93 -0.41 1.31 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -31.47 404.27 -10.15 -41.62 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -7.28 Total: 15.16 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.63 Total: 6.46 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.94 Total: -55.02 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.37 Total: -29.95 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.47 -10.15 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118188334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds