Wall clock time and date at job start Wed Apr 1 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38125 * 119.96656 * 2 1 4 4 C 1.38892 * 119.92746 * 180.30019 * 3 2 1 5 5 N 1.39667 * 120.07511 * 179.70541 * 4 3 2 6 6 C 1.46502 * 120.00122 * 174.30342 * 5 4 3 7 7 C 1.46501 * 120.00062 * 354.30202 * 5 4 3 8 8 C 1.38938 * 119.84840 * 359.72041 * 4 3 2 9 9 C 1.38080 * 119.92458 * 0.02562 * 8 4 3 10 10 C 1.38273 * 119.96134 * 179.75024 * 2 1 3 11 11 C 1.50693 * 119.92243 * 359.97357 * 10 2 1 12 12 N 1.46509 * 109.47245 * 79.73086 * 11 10 2 13 13 C 1.34769 * 119.99971 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00284 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00011 * 179.97438 * 13 12 11 16 16 C 1.47419 * 125.64599 * 359.97438 * 15 13 12 17 17 C 1.54911 * 104.83361 * 155.90935 * 16 15 13 18 18 C 1.55149 * 101.58204 * 37.00858 * 17 16 15 19 19 O 1.42892 * 110.72058 * 83.03890 * 18 17 16 20 20 C 1.50702 * 110.72187 * 206.13952 * 18 17 16 21 21 H 1.08000 * 119.99747 * 357.55580 * 20 18 17 22 22 C 1.37879 * 120.00198 * 177.28319 * 20 18 17 23 23 N 1.31513 * 119.99638 * 0.27334 * 22 20 18 24 24 Si 1.86794 * 119.99899 * 180.27357 * 22 20 18 25 25 H 1.48497 * 109.47641 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47120 * 120.00275 * 24 22 20 27 27 H 1.48510 * 109.46922 * 239.99794 * 24 22 20 28 28 C 1.47315 * 125.61860 * 180.20467 * 15 13 12 29 29 H 1.09004 * 109.47249 * 270.24980 * 1 2 3 30 30 H 1.08995 * 109.47263 * 30.25022 * 1 2 3 31 31 H 1.09001 * 109.47454 * 150.25702 * 1 2 3 32 32 H 1.07993 * 120.03668 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47198 * 89.99452 * 6 5 4 34 34 H 1.09000 * 109.47653 * 209.99814 * 6 5 4 35 35 H 1.09003 * 109.47211 * 330.00070 * 6 5 4 36 36 H 1.08998 * 109.46938 * 5.05986 * 7 5 4 37 37 H 1.08997 * 109.46968 * 125.06255 * 7 5 4 38 38 H 1.09005 * 109.47227 * 245.05641 * 7 5 4 39 39 H 1.07997 * 120.03542 * 180.02562 * 8 4 3 40 40 H 1.08000 * 119.95948 * 180.02562 * 9 8 4 41 41 H 1.08998 * 109.47642 * 319.72640 * 11 10 2 42 42 H 1.09004 * 109.47104 * 199.72424 * 11 10 2 43 43 H 0.97003 * 119.99403 * 359.97438 * 12 11 10 44 44 H 1.09000 * 110.37058 * 37.06697 * 16 15 13 45 45 H 1.09004 * 110.37074 * 274.74906 * 16 15 13 46 46 H 1.09002 * 111.00303 * 278.93473 * 17 16 15 47 47 H 1.08994 * 111.00342 * 155.08486 * 17 16 15 48 48 H 0.96708 * 114.00361 * 182.43773 * 19 18 17 49 49 H 0.97007 * 119.99757 * 180.02562 * 23 22 20 50 50 H 1.08993 * 110.06625 * 61.67298 * 28 15 13 51 51 H 1.09006 * 109.84766 * 300.41927 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1957 -0.0063 5 7 4.2865 2.4038 -0.0125 6 6 5.7466 2.4044 0.1068 7 6 3.5614 3.6706 -0.1384 8 6 4.2765 -0.0099 -0.0067 9 6 3.5805 -1.2025 -0.0014 10 6 2.1975 -1.1979 0.0052 11 6 1.4414 -2.5014 0.0115 12 7 0.9828 -2.8066 -1.3461 13 6 0.2803 -3.9320 -1.5830 14 8 0.0268 -4.6940 -0.6701 15 7 -0.1420 -4.2125 -2.8318 16 6 0.0926 -3.3797 -4.0254 17 6 -0.0070 -4.3613 -5.2197 18 6 -1.1453 -5.3063 -4.7521 19 8 -2.4243 -4.7374 -5.0388 20 6 -1.0106 -6.6624 -5.3955 21 1 -0.2204 -6.8456 -6.1086 22 6 -1.8927 -7.6707 -5.0697 23 7 -2.8549 -7.4474 -4.2015 24 14 -1.7210 -9.3538 -5.8615 25 1 -0.5674 -9.3458 -6.7965 26 1 -1.4978 -10.3761 -4.8079 27 1 -2.9621 -9.6775 -6.6102 28 6 -0.9186 -5.3998 -3.2285 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 1.6570 2.1319 0.0004 33 1 6.1924 2.3507 -0.8865 34 1 6.0705 3.3202 0.6013 35 1 6.0636 1.5426 0.6942 36 1 2.4886 3.4780 -0.1249 37 1 3.8238 4.3236 0.6938 38 1 3.8323 4.1525 -1.0778 39 1 5.3564 -0.0141 -0.0112 40 1 4.1169 -2.1399 -0.0013 41 1 0.5811 -2.4193 0.6758 42 1 2.0960 -3.2995 0.3618 43 1 1.1848 -2.1985 -2.0743 44 1 1.0849 -2.9303 -3.9855 45 1 -0.6718 -2.6067 -4.1050 46 1 0.9256 -4.9095 -5.3537 47 1 -0.2851 -3.8372 -6.1340 48 1 -3.1700 -5.2717 -4.7327 49 1 -3.4753 -8.1570 -3.9719 50 1 -1.8777 -5.4095 -2.7108 51 1 -0.3583 -6.3045 -2.9920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118188334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:37 Heat of formation + Delta-G solvation = -57.517707 kcal Electronic energy + Delta-G solvation = -30663.907688 eV Core-core repulsion = 26562.566753 eV Total energy + Delta-G solvation = -4101.340935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37696 -40.69559 -39.15093 -37.77176 -36.05271 -35.39470 -34.18924 -33.48895 -32.11677 -31.16814 -29.65639 -29.48888 -27.96473 -27.18380 -26.46739 -24.64286 -23.89705 -22.73541 -21.44145 -21.05181 -20.77004 -19.26928 -18.89187 -18.01754 -17.46422 -17.19436 -16.87520 -16.63809 -16.24562 -15.98229 -15.87971 -15.38079 -15.34352 -14.84099 -14.79148 -14.71221 -14.66846 -14.29640 -14.16769 -13.93417 -13.51224 -13.47839 -13.34146 -13.24534 -13.08273 -12.92898 -12.86945 -12.80756 -12.72409 -12.52621 -12.31016 -12.24421 -12.10277 -12.07795 -11.62505 -11.34720 -11.17720 -10.65247 -10.62423 -10.27448 -10.20438 -9.62013 -9.37392 -8.25644 -8.17924 -6.41009 0.48465 0.53099 1.40697 1.43876 1.54719 1.77908 2.17267 2.25527 2.38727 2.84818 3.01227 3.23483 3.80346 3.81691 3.85747 3.98894 4.09316 4.18928 4.22793 4.28265 4.39427 4.42296 4.47993 4.54473 4.59327 4.60250 4.69166 4.72976 4.74265 4.78105 4.80506 4.91678 4.93935 4.99416 5.05915 5.07553 5.14216 5.22876 5.25919 5.37230 5.39665 5.49494 5.50994 5.54132 5.76599 5.82675 5.92329 6.04207 6.20064 6.36070 6.55640 6.65886 7.08809 7.29827 7.37629 7.59148 8.80948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002056 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.102173 B =13617.579601 C =13684.137802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.019 4.019 3 C -0.209 4.209 4 C 0.219 3.781 5 N -0.643 5.643 6 C 0.089 3.911 7 C 0.083 3.917 8 C -0.211 4.211 9 C -0.050 4.050 10 C -0.177 4.177 11 C 0.193 3.807 12 N -0.722 5.722 13 C 0.710 3.290 14 O -0.645 6.645 15 N -0.636 5.636 16 C 0.109 3.891 17 C -0.110 4.110 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.068 0.932 22 C 0.023 3.977 23 N -0.916 5.916 24 Si 0.964 3.036 25 H -0.264 1.264 26 H -0.285 1.285 27 H -0.277 1.277 28 C 0.141 3.859 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.405 0.595 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.376 0.624 49 H 0.270 0.730 50 H 0.027 0.973 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.596 23.811 7.608 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.020 4.020 3 C -0.231 4.231 4 C 0.116 3.884 5 N -0.354 5.354 6 C -0.054 4.054 7 C -0.059 4.059 8 C -0.233 4.233 9 C -0.069 4.069 10 C -0.180 4.180 11 C 0.070 3.930 12 N -0.379 5.379 13 C 0.412 3.588 14 O -0.528 6.528 15 N -0.373 5.373 16 C -0.013 4.013 17 C -0.148 4.148 18 C 0.193 3.807 19 O -0.396 6.396 20 C -0.593 4.593 21 H 0.086 0.914 22 C -0.177 4.177 23 N -0.556 5.556 24 Si 0.790 3.210 25 H -0.188 1.188 26 H -0.211 1.211 27 H -0.203 1.203 28 C 0.018 3.982 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.242 0.758 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.226 0.774 49 H 0.079 0.921 50 H 0.045 0.955 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.784 23.882 8.174 29.770 hybrid contribution -0.617 -1.592 -0.122 1.712 sum 15.167 22.289 8.052 28.137 Atomic orbital electron populations 1.20897 0.90873 1.03098 1.02922 1.19638 0.95981 0.91934 0.94486 1.20700 0.92195 0.98219 1.12018 1.18026 0.91353 0.86496 0.92522 1.46579 1.06420 1.03366 1.79035 1.21752 0.78519 1.03549 1.01551 1.21851 0.97928 0.84340 1.01786 1.20792 1.00359 0.90660 1.11519 1.20944 0.92867 0.98267 0.94808 1.19356 0.93882 0.92974 1.11753 1.19813 0.97130 0.93879 0.82146 1.45121 1.58465 1.22602 1.11714 1.15757 0.79068 0.82318 0.81625 1.90842 1.65126 1.52371 1.44410 1.47962 1.57219 1.25670 1.06421 1.22363 1.01643 0.93556 0.83716 1.22714 0.97815 0.96556 0.97691 1.19712 0.82027 0.91399 0.87611 1.86074 1.17172 1.52393 1.83942 1.21873 1.15081 0.96445 1.25947 0.91413 1.25838 0.94524 1.02711 0.94645 1.69766 1.17372 1.35077 1.33367 0.85409 0.78372 0.79008 0.78259 1.18816 1.21068 1.20266 1.22406 0.92431 0.84847 0.98566 0.90425 0.90029 0.92550 0.84311 0.93047 0.89943 0.91161 0.90214 0.91344 0.92217 0.84542 0.85264 0.92311 0.92274 0.75824 0.88496 0.91164 0.89886 0.89101 0.77379 0.92066 0.95460 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.26 71.23 0.66 -1.67 16 2 C -0.02 -0.39 5.88 -19.88 -0.12 -0.50 16 3 C -0.21 -3.69 8.97 22.40 0.20 -3.48 16 4 C 0.22 3.77 6.54 38.22 0.25 4.02 16 5 N -0.64 -8.30 3.41 -747.26 -2.55 -10.85 16 6 C 0.09 0.76 10.10 127.77 1.29 2.05 16 7 C 0.08 0.72 10.62 127.77 1.36 2.08 16 8 C -0.21 -3.68 9.16 22.40 0.21 -3.48 16 9 C -0.05 -0.98 9.66 22.25 0.21 -0.77 16 10 C -0.18 -3.93 5.25 -19.84 -0.10 -4.04 16 11 C 0.19 5.34 4.92 85.63 0.42 5.76 16 12 N -0.72 -22.16 4.82 -482.30 -2.32 -24.49 16 13 C 0.71 29.78 8.49 179.06 1.52 31.30 16 14 O -0.64 -32.97 16.67 -3.98 -0.07 -33.04 16 15 N -0.64 -27.01 3.33 -829.01 -2.76 -29.77 16 16 C 0.11 3.68 6.57 86.86 0.57 4.25 16 17 C -0.11 -4.24 6.23 31.98 0.20 -4.05 16 18 C 0.23 11.48 0.85 -10.35 -0.01 11.48 16 19 O -0.59 -30.19 13.08 -148.98 -1.95 -32.14 16 20 C -0.56 -29.53 8.11 25.60 0.21 -29.32 16 21 H 0.07 3.50 7.77 -2.91 -0.02 3.48 16 22 C 0.02 1.25 5.27 84.66 0.45 1.70 16 23 N -0.92 -50.78 10.96 21.45 0.24 -50.55 16 24 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.14 7.27 5.39 86.67 0.47 7.74 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 32 H 0.14 1.92 5.74 -2.91 -0.02 1.91 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.42 8.07 -2.39 -0.02 0.41 16 35 H 0.07 0.58 6.45 -2.39 -0.02 0.57 16 36 H 0.08 0.67 5.31 -2.39 -0.01 0.66 16 37 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.14 1.87 6.31 -2.91 -0.02 1.85 16 40 H 0.13 2.32 8.03 -2.91 -0.02 2.30 16 41 H 0.06 1.74 7.29 -2.39 -0.02 1.72 16 42 H 0.06 1.72 8.00 -2.39 -0.02 1.70 16 43 H 0.41 10.48 6.94 -92.71 -0.64 9.83 16 44 H 0.10 2.49 7.30 -2.39 -0.02 2.47 16 45 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 46 H 0.08 3.08 8.03 -2.39 -0.02 3.06 16 47 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.38 20.31 7.24 -74.05 -0.54 19.77 16 49 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 50 H 0.03 1.56 8.00 -2.39 -0.02 1.54 16 51 H 0.03 1.68 7.81 -2.38 -0.02 1.66 16 Total: -1.00 -69.94 404.27 0.17 -69.76 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.22 Total: 43.24 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 7.78 Total: 23.06 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -7.40 Total: -115.65 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -2.01 Total: -65.17 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.94 0.17 -69.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118188334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.247 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds