Wall clock time and date at job start Wed Apr 1 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37980 * 120.07391 * 2 1 4 4 C 1.38343 * 120.14274 * 179.97438 * 3 2 1 5 5 C 1.38375 * 120.29601 * 0.02562 * 4 3 2 6 6 C 1.37937 * 120.14328 * 359.74254 * 5 4 3 7 7 C 1.39555 * 120.07437 * 179.97438 * 2 1 3 8 8 C 1.47842 * 120.14555 * 359.97438 * 7 2 1 9 9 O 1.21558 * 119.99828 * 354.01534 * 8 7 2 10 10 N 1.34776 * 120.00569 * 174.02124 * 8 7 2 11 11 C 1.46499 * 120.00551 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46584 * 324.99843 * 11 10 8 13 13 C 1.53006 * 109.47299 * 84.99394 * 11 10 8 14 14 C 1.52998 * 109.47487 * 204.99838 * 11 10 8 15 15 C 1.53004 * 109.47223 * 64.99347 * 14 11 10 16 16 H 1.08998 * 109.46982 * 305.00177 * 15 14 11 17 17 C 1.52996 * 109.47166 * 185.00422 * 15 14 11 18 18 N 1.46898 * 109.46685 * 65.00400 * 15 14 11 19 19 C 1.46896 * 110.99791 * 204.99831 * 18 15 14 20 20 C 1.50696 * 109.47320 * 180.02562 * 19 18 15 21 21 O 1.21297 * 119.99990 * 0.02562 * 20 19 18 22 22 N 1.34780 * 120.00556 * 180.02562 * 20 19 18 23 23 C 1.37087 * 120.00501 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99952 * 0.02562 * 23 22 20 25 25 C 1.38953 * 120.00419 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99565 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00405 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47060 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47462 * 119.99974 * 27 25 23 30 30 H 1.48500 * 109.47211 * 239.99901 * 27 25 23 31 31 H 1.09008 * 109.46681 * 263.43069 * 1 2 3 32 32 H 1.09003 * 109.47169 * 23.42372 * 1 2 3 33 33 H 1.09001 * 109.47290 * 143.43071 * 1 2 3 34 34 H 1.07996 * 119.93189 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.85012 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.93200 * 180.02562 * 5 4 3 37 37 H 1.08008 * 120.07375 * 180.27809 * 6 5 4 38 38 H 0.97001 * 119.99484 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.46582 * 60.00144 * 13 11 10 40 40 H 1.08995 * 109.46695 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46694 * 300.00517 * 13 11 10 42 42 H 1.09008 * 109.46583 * 304.99580 * 14 11 10 43 43 H 1.08997 * 109.47627 * 184.99731 * 14 11 10 44 44 H 1.08996 * 109.47251 * 180.02562 * 17 15 14 45 45 H 1.09008 * 109.47185 * 300.00294 * 17 15 14 46 46 H 1.09004 * 109.47223 * 59.99691 * 17 15 14 47 47 H 1.00898 * 111.00001 * 81.04749 * 18 15 14 48 48 H 1.09004 * 109.47317 * 59.99728 * 19 18 15 49 49 H 1.09004 * 109.47160 * 300.00254 * 19 18 15 50 50 H 0.97006 * 119.99232 * 0.02562 * 22 20 19 51 51 H 0.97000 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0054 7 6 2.2063 -1.2077 0.0005 8 6 1.4720 -2.4908 0.0017 9 8 0.2614 -2.4983 0.1119 10 7 2.1447 -3.6524 -0.1194 11 6 1.4170 -4.9239 -0.1188 12 1 0.5632 -4.8535 0.5552 13 6 0.9251 -5.2307 -1.5348 14 6 2.3472 -6.0438 0.3518 15 6 2.7399 -5.8014 1.8106 16 1 3.1731 -4.8061 1.9096 17 6 3.7667 -6.8499 2.2433 18 7 1.5472 -5.9034 2.6621 19 6 1.7178 -5.1334 3.9013 20 6 0.4775 -5.2621 4.7475 21 8 -0.4566 -5.9301 4.3568 22 7 0.4059 -4.6350 5.9384 23 6 -0.7226 -4.7516 6.7079 24 1 -1.5542 -5.3464 6.3600 25 6 -0.7965 -4.1047 7.9354 26 7 0.2152 -3.3806 8.3584 27 14 -2.3340 -4.2643 8.9842 28 1 -3.3205 -5.1288 8.2882 29 1 -1.9801 -4.8718 10.2922 30 1 -2.9234 -2.9195 9.2064 31 1 -0.3633 -0.1176 1.0210 32 1 -0.3634 0.9430 -0.4085 33 1 -0.3634 -0.8254 -0.6123 34 1 1.6585 2.1294 -0.0004 35 1 4.1183 2.1331 0.0010 36 1 5.3612 0.0099 0.0014 37 1 4.1494 -2.1301 0.0099 38 1 3.1106 -3.6465 -0.2076 39 1 1.7789 -5.3010 -2.2086 40 1 0.3833 -6.1765 -1.5341 41 1 0.2624 -4.4329 -1.8699 42 1 3.2435 -6.0563 -0.2685 43 1 1.8340 -7.0018 0.2680 44 1 4.0461 -6.6775 3.2826 45 1 3.3335 -7.8453 2.1441 46 1 4.6517 -6.7742 1.6113 47 1 1.3277 -6.8676 2.8628 48 1 1.8843 -4.0841 3.6572 49 1 2.5753 -5.5184 4.4532 50 1 1.1528 -4.1005 6.2506 51 1 0.1638 -2.9293 9.2155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133555703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:17 Heat of formation + Delta-G solvation = -56.632096 kcal Electronic energy + Delta-G solvation = -30876.540316 eV Core-core repulsion = 26775.237784 eV Total energy + Delta-G solvation = -4101.302532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47936 -38.80313 -38.24242 -37.12894 -35.15851 -33.83780 -32.80716 -32.24690 -31.24711 -30.80806 -29.95630 -27.08747 -26.85263 -26.16650 -24.07886 -23.83255 -22.22662 -21.17162 -20.65347 -20.31525 -19.20703 -17.94515 -17.78217 -16.42895 -16.03195 -15.75608 -15.45537 -15.27700 -15.07522 -14.87131 -14.60810 -14.53481 -13.94843 -13.80373 -13.78069 -13.51389 -13.29066 -13.21509 -13.05555 -12.74211 -12.42629 -12.28648 -12.14089 -12.11299 -11.96837 -11.91774 -11.84150 -11.52214 -11.41230 -11.27337 -11.09250 -11.01858 -10.81670 -10.70227 -10.30281 -10.17256 -9.50470 -9.46598 -9.20857 -9.02295 -8.79634 -8.39866 -7.97281 -7.89533 -6.36697 -3.76990 0.73104 1.15631 2.88510 3.17724 3.20105 3.30213 3.38014 3.72524 3.97173 4.14592 4.38306 4.54831 4.55969 4.66786 4.67614 4.84015 4.95072 5.12035 5.15063 5.19148 5.24727 5.29771 5.34808 5.37698 5.48610 5.49505 5.54890 5.66638 5.67918 5.71190 5.74303 5.81181 5.83144 5.86957 5.97937 6.06891 6.09733 6.09915 6.18287 6.21616 6.23441 6.33372 6.36778 6.49505 6.63534 6.72432 7.29318 7.54455 7.60441 7.73587 8.12141 8.31280 8.67029 9.23535 9.60204 10.11963 10.81333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.003062 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.135217 B = 9141.853651 C =10959.902767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.021 4.021 3 C -0.133 4.133 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.083 4.083 7 C -0.137 4.137 8 C 0.556 3.444 9 O -0.520 6.520 10 N -0.719 5.719 11 C 0.144 3.856 12 H 0.112 0.888 13 C -0.162 4.162 14 C -0.112 4.112 15 C 0.081 3.919 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.659 5.659 19 C 0.053 3.947 20 C 0.443 3.557 21 O -0.582 6.582 22 N -0.565 5.565 23 C -0.296 4.296 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.392 0.608 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.349 0.651 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.391 0.609 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.278 4.360 -19.905 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.151 4.151 4 C -0.111 4.111 5 C -0.156 4.156 6 C -0.102 4.102 7 C -0.140 4.140 8 C 0.343 3.657 9 O -0.397 6.397 10 N -0.371 5.371 11 C 0.040 3.960 12 H 0.130 0.870 13 C -0.220 4.220 14 C -0.151 4.151 15 C -0.030 4.030 16 H 0.093 0.907 17 C -0.243 4.243 18 N -0.291 5.291 19 C -0.079 4.079 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.202 5.202 23 C -0.426 4.426 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.226 0.774 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.169 0.831 48 H 0.100 0.900 49 H 0.059 0.941 50 H 0.224 0.776 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.415 4.477 -20.225 23.652 hybrid contribution 1.148 -0.153 1.373 1.796 sum 12.563 4.324 -18.852 23.063 Atomic orbital electron populations 1.21120 0.89872 1.02825 1.04175 1.20118 0.97070 0.91511 0.93463 1.21092 0.94284 0.97595 1.02083 1.21331 0.94287 0.98274 0.97241 1.21046 1.00057 0.92257 1.02206 1.21264 0.92960 0.98446 0.97532 1.19888 0.93584 0.93526 1.07052 1.18208 0.87262 0.83608 0.76580 1.90769 1.13590 1.86892 1.48476 1.45988 1.10266 1.05994 1.74847 1.21020 0.96441 0.81395 0.97107 0.87014 1.22180 1.01028 1.02147 0.96653 1.21871 0.99079 0.98992 0.95125 1.21598 0.89528 0.98684 0.93161 0.90667 1.22542 0.99945 1.00118 1.01716 1.60150 1.34430 1.17718 1.16787 1.21656 0.96495 0.99155 0.90622 1.19817 0.89289 0.84974 0.83111 1.90523 1.39432 1.44203 1.72389 1.41862 1.17630 1.44493 1.16211 1.19751 0.95280 1.28869 0.98710 0.87906 1.25249 0.98686 0.96434 0.97630 1.69624 1.30934 1.32288 1.21622 0.85812 0.81227 0.78083 0.79310 1.19205 1.20827 1.20748 0.90219 0.92602 0.88561 0.85444 0.85723 0.85612 0.85834 0.77360 0.93137 0.91614 0.92295 0.91684 0.90104 0.92537 0.92292 0.92372 0.83129 0.90009 0.94104 0.77569 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.73 36.00 0.31 -1.25 16 2 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 3 C -0.13 -1.32 9.66 -39.64 -0.38 -1.70 16 4 C -0.09 -0.80 10.04 -39.49 -0.40 -1.19 16 5 C -0.14 -1.15 10.03 -39.64 -0.40 -1.55 16 6 C -0.08 -0.78 9.53 -39.18 -0.37 -1.15 16 7 C -0.14 -1.68 5.87 -104.97 -0.62 -2.29 16 8 C 0.56 7.74 7.67 -12.33 -0.09 7.65 16 9 O -0.52 -9.17 13.00 5.32 0.07 -9.11 16 10 N -0.72 -7.91 4.40 -54.75 -0.24 -8.15 16 11 C 0.14 1.71 2.52 -67.93 -0.17 1.54 16 12 H 0.11 1.84 7.05 -51.93 -0.37 1.47 16 13 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 14 C -0.11 -1.09 4.43 -26.73 -0.12 -1.21 16 15 C 0.08 0.92 2.53 -67.71 -0.17 0.75 16 16 H 0.08 0.86 7.28 -51.93 -0.38 0.49 16 17 C -0.18 -1.81 9.16 37.16 0.34 -1.47 16 18 N -0.66 -10.48 5.25 -108.00 -0.57 -11.04 16 19 C 0.05 0.97 5.96 -4.98 -0.03 0.94 16 20 C 0.44 10.82 7.82 -10.99 -0.09 10.73 16 21 O -0.58 -16.26 15.78 5.54 0.09 -16.17 16 22 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 23 C -0.30 -8.53 9.68 -14.94 -0.14 -8.67 16 24 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -25.18 13.05 55.50 0.72 -24.45 16 27 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 33 H 0.10 1.37 5.85 -51.93 -0.30 1.07 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.83 6.46 -52.48 -0.34 0.49 16 38 H 0.39 3.16 6.68 -40.82 -0.27 2.89 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 45 H 0.06 0.57 8.13 -51.92 -0.42 0.15 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.35 5.76 8.17 -39.29 -0.32 5.43 16 48 H 0.08 1.46 8.06 -51.93 -0.42 1.05 16 49 H 0.04 0.67 7.44 -51.93 -0.39 0.29 16 50 H 0.39 9.86 7.90 -40.82 -0.32 9.53 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 417.31 15.07 6.29 6.29 Total: -1.00 -34.30 417.31 -9.48 -43.78 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -8.07 Total: 17.75 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.69 Total: -0.60 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.14 Total: -58.54 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.16 Total: -25.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.30 -9.48 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133555703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.853 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds