Wall clock time and date at job start Wed Apr 1 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37980 * 120.07391 * 2 1 4 4 C 1.38343 * 120.14274 * 179.97438 * 3 2 1 5 5 C 1.38375 * 120.29601 * 0.02562 * 4 3 2 6 6 C 1.37937 * 120.14328 * 359.74254 * 5 4 3 7 7 C 1.39555 * 120.07437 * 179.97438 * 2 1 3 8 8 C 1.47842 * 120.14555 * 359.97438 * 7 2 1 9 9 O 1.21558 * 119.99828 * 354.01534 * 8 7 2 10 10 N 1.34776 * 120.00569 * 174.02124 * 8 7 2 11 11 C 1.46499 * 120.00551 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46584 * 324.99843 * 11 10 8 13 13 C 1.53006 * 109.47299 * 84.99394 * 11 10 8 14 14 C 1.52998 * 109.47487 * 204.99838 * 11 10 8 15 15 C 1.53004 * 109.47223 * 64.99347 * 14 11 10 16 16 H 1.08998 * 109.46982 * 305.00177 * 15 14 11 17 17 C 1.52996 * 109.47166 * 185.00422 * 15 14 11 18 18 N 1.46898 * 109.46685 * 65.00400 * 15 14 11 19 19 C 1.46896 * 110.99791 * 204.99831 * 18 15 14 20 20 C 1.50696 * 109.47320 * 180.02562 * 19 18 15 21 21 O 1.21297 * 119.99990 * 0.02562 * 20 19 18 22 22 N 1.34780 * 120.00556 * 180.02562 * 20 19 18 23 23 C 1.37087 * 120.00501 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99952 * 0.02562 * 23 22 20 25 25 C 1.38953 * 120.00419 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99565 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00405 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47060 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47462 * 119.99974 * 27 25 23 30 30 H 1.48500 * 109.47211 * 239.99901 * 27 25 23 31 31 H 1.09008 * 109.46681 * 263.43069 * 1 2 3 32 32 H 1.09003 * 109.47169 * 23.42372 * 1 2 3 33 33 H 1.09001 * 109.47290 * 143.43071 * 1 2 3 34 34 H 1.07996 * 119.93189 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.85012 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.93200 * 180.02562 * 5 4 3 37 37 H 1.08008 * 120.07375 * 180.27809 * 6 5 4 38 38 H 0.97001 * 119.99484 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.46582 * 60.00144 * 13 11 10 40 40 H 1.08995 * 109.46695 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46694 * 300.00517 * 13 11 10 42 42 H 1.09008 * 109.46583 * 304.99580 * 14 11 10 43 43 H 1.08997 * 109.47627 * 184.99731 * 14 11 10 44 44 H 1.08996 * 109.47251 * 180.02562 * 17 15 14 45 45 H 1.09008 * 109.47185 * 300.00294 * 17 15 14 46 46 H 1.09004 * 109.47223 * 59.99691 * 17 15 14 47 47 H 1.00898 * 111.00001 * 81.04749 * 18 15 14 48 48 H 1.09004 * 109.47317 * 59.99728 * 19 18 15 49 49 H 1.09004 * 109.47160 * 300.00254 * 19 18 15 50 50 H 0.97006 * 119.99232 * 0.02562 * 22 20 19 51 51 H 0.97000 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0054 7 6 2.2063 -1.2077 0.0005 8 6 1.4720 -2.4908 0.0017 9 8 0.2614 -2.4983 0.1119 10 7 2.1447 -3.6524 -0.1194 11 6 1.4170 -4.9239 -0.1188 12 1 0.5632 -4.8535 0.5552 13 6 0.9251 -5.2307 -1.5348 14 6 2.3472 -6.0438 0.3518 15 6 2.7399 -5.8014 1.8106 16 1 3.1731 -4.8061 1.9096 17 6 3.7667 -6.8499 2.2433 18 7 1.5472 -5.9034 2.6621 19 6 1.7178 -5.1334 3.9013 20 6 0.4775 -5.2621 4.7475 21 8 -0.4566 -5.9301 4.3568 22 7 0.4059 -4.6350 5.9384 23 6 -0.7226 -4.7516 6.7079 24 1 -1.5542 -5.3464 6.3600 25 6 -0.7965 -4.1047 7.9354 26 7 0.2152 -3.3806 8.3584 27 14 -2.3340 -4.2643 8.9842 28 1 -3.3205 -5.1288 8.2882 29 1 -1.9801 -4.8718 10.2922 30 1 -2.9234 -2.9195 9.2064 31 1 -0.3633 -0.1176 1.0210 32 1 -0.3634 0.9430 -0.4085 33 1 -0.3634 -0.8254 -0.6123 34 1 1.6585 2.1294 -0.0004 35 1 4.1183 2.1331 0.0010 36 1 5.3612 0.0099 0.0014 37 1 4.1494 -2.1301 0.0099 38 1 3.1106 -3.6465 -0.2076 39 1 1.7789 -5.3010 -2.2086 40 1 0.3833 -6.1765 -1.5341 41 1 0.2624 -4.4329 -1.8699 42 1 3.2435 -6.0563 -0.2685 43 1 1.8340 -7.0018 0.2680 44 1 4.0461 -6.6775 3.2826 45 1 3.3335 -7.8453 2.1441 46 1 4.6517 -6.7742 1.6113 47 1 1.3277 -6.8676 2.8628 48 1 1.8843 -4.0841 3.6572 49 1 2.5753 -5.5184 4.4532 50 1 1.1528 -4.1005 6.2506 51 1 0.1638 -2.9293 9.2155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133555703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:16 Heat of formation + Delta-G solvation = -80.750247 kcal Electronic energy + Delta-G solvation = -30877.586157 eV Core-core repulsion = 26775.237784 eV Total energy + Delta-G solvation = -4102.348373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41382 -40.26084 -39.47918 -38.32788 -36.36481 -35.85890 -33.68512 -33.33587 -33.13535 -31.93881 -30.86398 -27.98282 -27.96257 -27.60932 -25.70724 -24.85271 -23.05743 -22.05996 -21.59204 -21.33218 -21.08505 -19.94936 -18.75619 -17.80623 -17.29501 -16.89660 -16.54953 -16.43696 -16.22836 -16.18222 -15.89644 -15.77233 -15.49402 -15.21305 -14.85890 -14.54226 -14.40879 -14.27582 -14.02153 -13.89322 -13.61600 -13.55841 -13.37016 -13.24345 -13.02043 -12.97533 -12.83923 -12.83259 -12.66708 -12.61468 -12.43522 -12.14392 -12.02575 -11.99920 -11.71768 -11.64493 -11.53690 -10.56918 -10.37459 -10.11596 -10.03920 -9.84057 -9.61777 -9.22441 -8.49272 -5.98090 -0.07276 0.42087 1.34021 1.38761 1.53582 1.96096 2.02340 2.25324 2.27425 2.90386 2.94880 3.17677 3.53983 3.70093 3.81034 3.88443 3.92591 4.08397 4.17751 4.20320 4.31609 4.40840 4.41923 4.44699 4.50866 4.56099 4.57609 4.61658 4.72106 4.76937 4.79213 4.83399 4.87899 4.91003 5.00765 5.03447 5.16949 5.26057 5.28142 5.32500 5.37900 5.38284 5.41760 5.52049 5.62058 5.68283 5.90985 5.99486 6.15388 6.49045 6.57402 6.64659 7.10064 7.35080 7.52914 8.08730 8.68615 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.003062 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.135217 B = 9141.853651 C =10959.902767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.090 4.090 5 C -0.134 4.134 6 C -0.082 4.082 7 C -0.162 4.162 8 C 0.547 3.453 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.146 3.854 12 H 0.059 0.941 13 C -0.155 4.155 14 C -0.102 4.102 15 C 0.081 3.919 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.675 5.675 19 C 0.073 3.927 20 C 0.436 3.564 21 O -0.622 6.622 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.274 1.274 29 H -0.267 1.267 30 H -0.271 1.271 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.344 0.656 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.898 4.818 -20.590 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.158 4.158 4 C -0.108 4.108 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.165 4.165 8 C 0.336 3.664 9 O -0.454 6.454 10 N -0.355 5.355 11 C 0.041 3.959 12 H 0.077 0.923 13 C -0.213 4.213 14 C -0.140 4.140 15 C -0.029 4.029 16 H 0.096 0.904 17 C -0.236 4.236 18 N -0.308 5.308 19 C -0.060 4.060 20 C 0.224 3.776 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.199 1.199 29 H -0.192 1.192 30 H -0.196 1.196 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.248 0.752 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.163 0.837 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.229 0.771 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.116 4.933 -20.923 26.279 hybrid contribution 0.079 -0.259 1.531 1.555 sum 15.194 4.674 -19.392 25.075 Atomic orbital electron populations 1.20958 0.91340 1.02891 1.02137 1.20234 0.96521 0.92877 0.95531 1.21323 0.95380 0.97205 1.01850 1.21762 0.93652 0.99935 0.95402 1.21501 1.01767 0.91517 1.00360 1.21577 0.91580 1.00409 0.96437 1.19926 0.95024 0.92406 1.09179 1.18683 0.86886 0.84979 0.75836 1.90748 1.15907 1.87680 1.51026 1.45827 1.11026 1.04996 1.73603 1.20879 0.95635 0.82536 0.96830 0.92311 1.22104 1.01619 1.01357 0.96200 1.21849 1.00073 0.97764 0.94357 1.21734 0.88323 0.99665 0.93147 0.90374 1.22455 1.00271 0.99216 1.01625 1.60149 1.37623 1.17078 1.15925 1.21428 0.93639 1.00029 0.90912 1.20943 0.90706 0.83194 0.82757 1.90486 1.41579 1.45631 1.73161 1.41935 1.17229 1.45087 1.16865 1.19695 0.95937 1.30463 1.00307 0.90542 1.26048 1.01700 0.95436 0.98045 1.69679 1.32188 1.32090 1.22180 0.84877 0.77351 0.78343 0.77799 1.19910 1.19160 1.19609 0.92918 0.90531 0.90934 0.83977 0.82652 0.82221 0.83113 0.75249 0.90328 0.91118 0.94879 0.87654 0.89945 0.93557 0.92251 0.89441 0.83715 0.89588 0.91611 0.77137 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.73 71.23 0.62 -2.65 16 2 C -0.05 -1.28 5.91 -19.61 -0.12 -1.39 16 3 C -0.14 -2.62 9.66 22.23 0.21 -2.41 16 4 C -0.09 -1.25 10.04 22.33 0.22 -1.03 16 5 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 6 C -0.08 -1.33 9.53 22.53 0.21 -1.11 16 7 C -0.16 -3.98 5.87 -20.09 -0.12 -4.09 16 8 C 0.55 16.00 7.67 86.79 0.67 16.66 16 9 O -0.57 -22.29 13.00 -3.90 -0.05 -22.34 16 10 N -0.70 -15.08 4.40 -445.40 -1.96 -17.04 16 11 C 0.15 3.45 2.52 44.99 0.11 3.56 16 12 H 0.06 2.07 7.05 -2.38 -0.02 2.06 16 13 C -0.15 -3.22 9.48 71.98 0.68 -2.54 16 14 C -0.10 -1.75 4.43 30.59 0.14 -1.61 16 15 C 0.08 1.69 2.53 44.92 0.11 1.80 16 16 H 0.08 1.60 7.28 -2.39 -0.02 1.58 16 17 C -0.18 -2.92 9.16 71.98 0.66 -2.27 16 18 N -0.68 -21.61 5.25 -495.59 -2.60 -24.21 16 19 C 0.07 2.66 5.96 85.56 0.51 3.17 16 20 C 0.44 22.16 7.82 87.66 0.69 22.85 16 21 O -0.62 -36.55 15.78 -3.08 -0.05 -36.60 16 22 N -0.57 -31.21 5.29 -306.98 -1.62 -32.84 16 23 C -0.33 -19.96 9.68 84.04 0.81 -19.14 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 26 N -0.92 -51.33 13.05 21.66 0.28 -51.05 16 27 Si 0.99 44.64 29.55 68.60 2.03 46.67 16 28 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 33 H 0.07 2.36 5.85 -2.39 -0.01 2.34 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.15 1.46 6.46 -2.91 -0.02 1.44 16 38 H 0.41 5.56 6.68 -92.71 -0.62 4.94 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 0.87 7.45 -2.39 -0.02 0.86 16 45 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.34 11.51 8.17 -89.70 -0.73 10.77 16 48 H 0.09 3.10 8.06 -2.38 -0.02 3.08 16 49 H 0.07 2.09 7.44 -2.38 -0.02 2.08 16 50 H 0.39 20.43 7.90 -92.70 -0.73 19.70 16 51 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -81.12 417.31 1.02 -80.09 By element: Atomic # 1 Polarization: 50.37 SS G_CDS: -1.12 Total: 49.25 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.11 Total: 8.06 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -5.90 Total: -125.13 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.10 Total: -58.94 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.12 1.02 -80.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133555703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.655 kcal (2) G-P(sol) polarization free energy of solvation -81.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds