Wall clock time and date at job start Wed Apr 1 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37980 * 120.07238 * 2 1 4 4 C 1.38337 * 120.14073 * 180.02562 * 3 2 1 5 5 C 1.38380 * 120.29819 * 359.97438 * 4 3 2 6 6 C 1.37944 * 120.14005 * 0.02589 * 5 4 3 7 7 C 1.39558 * 120.07382 * 179.71984 * 2 1 3 8 8 C 1.47849 * 120.14091 * 359.97438 * 7 2 1 9 9 O 1.21555 * 120.00113 * 5.55440 * 8 7 2 10 10 N 1.34773 * 119.99883 * 185.54627 * 8 7 2 11 11 C 1.46505 * 120.00180 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46759 * 35.00038 * 11 10 8 13 13 C 1.53002 * 109.46620 * 275.00229 * 11 10 8 14 14 C 1.52995 * 109.47176 * 154.99948 * 11 10 8 15 15 C 1.52998 * 109.47398 * 295.00294 * 14 11 10 16 16 H 1.09000 * 109.46624 * 304.99768 * 15 14 11 17 17 C 1.52998 * 109.47206 * 185.00200 * 15 14 11 18 18 N 1.46896 * 109.47274 * 64.99615 * 15 14 11 19 19 C 1.46900 * 111.00041 * 204.99891 * 18 15 14 20 20 C 1.50696 * 109.47245 * 180.02562 * 19 18 15 21 21 O 1.21295 * 120.00052 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00191 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00203 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00337 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00548 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99630 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00501 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47186 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46891 * 120.00030 * 27 25 23 30 30 H 1.48499 * 109.47171 * 239.99835 * 27 25 23 31 31 H 1.08998 * 109.47197 * 96.86156 * 1 2 3 32 32 H 1.09001 * 109.47061 * 216.86701 * 1 2 3 33 33 H 1.08996 * 109.46896 * 336.86138 * 1 2 3 34 34 H 1.07994 * 119.92877 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.85435 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.93379 * 180.02562 * 5 4 3 37 37 H 1.08005 * 120.06824 * 179.97438 * 6 5 4 38 38 H 0.97003 * 119.99904 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47399 * 299.99417 * 13 11 10 40 40 H 1.08989 * 109.47232 * 60.00139 * 13 11 10 41 41 H 1.09003 * 109.46384 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47328 * 55.00231 * 14 11 10 43 43 H 1.08999 * 109.46941 * 174.99583 * 14 11 10 44 44 H 1.08997 * 109.47505 * 59.99684 * 17 15 14 45 45 H 1.08996 * 109.47389 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.47314 * 299.99763 * 17 15 14 47 47 H 1.00903 * 110.99896 * 81.05565 * 18 15 14 48 48 H 1.08995 * 109.47618 * 300.00770 * 19 18 15 49 49 H 1.09001 * 109.46949 * 60.00502 * 19 18 15 50 50 H 0.97001 * 120.00102 * 359.97438 * 22 20 19 51 51 H 0.96993 * 120.00373 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2814 0.0018 -0.0005 6 6 3.6023 -1.1989 -0.0005 7 6 2.2064 -1.2077 0.0059 8 6 1.4720 -2.4908 0.0128 9 8 0.2607 -2.4984 -0.0886 10 7 2.1455 -3.6522 0.1312 11 6 1.4179 -4.9237 0.1375 12 1 0.5597 -4.8544 -0.5309 13 6 0.9354 -5.2281 1.5572 14 6 2.3450 -6.0442 -0.3375 15 6 2.7281 -5.8042 -1.7992 16 1 1.8240 -5.7042 -2.3998 17 6 3.5524 -6.9870 -2.3112 18 7 3.5225 -4.5728 -1.9013 19 6 3.4140 -3.9862 -3.2437 20 6 4.2408 -2.7280 -3.3104 21 8 4.8599 -2.3568 -2.3357 22 7 4.2922 -2.0152 -4.4531 23 6 5.0448 -0.8709 -4.5140 24 1 5.5961 -0.5403 -3.6461 25 6 5.0983 -0.1363 -5.6922 26 7 4.4279 -0.5388 -6.7484 27 14 6.1231 1.4232 -5.7749 28 1 6.7764 1.6564 -4.4619 29 1 7.1625 1.2774 -6.8255 30 1 5.2456 2.5753 -6.1033 31 1 -0.3633 -0.1228 -1.0203 32 1 -0.3633 -0.8222 0.6166 33 1 -0.3633 0.9450 0.4038 34 1 1.6585 2.1293 0.0004 35 1 4.1183 2.1330 -0.0010 36 1 5.3614 0.0099 -0.0005 37 1 4.1494 -2.1301 -0.0010 38 1 3.1121 -3.6461 0.2124 39 1 1.7936 -5.2974 2.2256 40 1 0.2749 -4.4299 1.8954 41 1 0.3944 -6.1744 1.5618 42 1 3.2454 -6.0557 0.2769 43 1 1.8325 -7.0020 -0.2487 44 1 2.9629 -7.9007 -2.2354 45 1 3.8249 -6.8163 -3.3527 46 1 4.4564 -7.0871 -1.7105 47 1 4.4869 -4.7435 -1.6583 48 1 3.7785 -4.6997 -3.9827 49 1 2.3712 -3.7476 -3.4527 50 1 3.7974 -2.3123 -5.2328 51 1 4.4649 -0.0258 -7.5708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133555705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:24 Heat of formation + Delta-G solvation = -52.200416 kcal Electronic energy + Delta-G solvation = -32488.297175 eV Core-core repulsion = 28387.186815 eV Total energy + Delta-G solvation = -4101.110360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.00416 -38.58463 -38.00671 -36.97808 -34.88074 -33.85669 -32.34763 -31.84507 -31.23569 -30.64749 -29.55688 -26.90981 -26.52843 -26.17607 -23.91986 -23.47519 -21.77240 -20.96852 -20.45511 -19.90775 -19.20081 -17.86393 -17.31040 -16.21945 -15.99968 -15.41814 -15.12504 -14.90489 -14.82150 -14.53773 -14.43278 -14.31735 -13.97031 -13.74355 -13.59788 -13.12224 -13.06471 -12.85946 -12.72820 -12.63272 -12.37076 -12.16356 -12.13990 -11.88260 -11.59517 -11.58548 -11.52598 -11.39253 -11.28536 -11.22786 -11.05272 -10.80488 -10.72649 -10.54494 -10.34714 -10.20571 -9.48396 -9.11387 -8.76147 -8.46550 -8.34108 -8.18721 -7.96254 -7.90644 -6.39457 -3.79340 1.38218 1.88872 3.16329 3.26849 3.32718 3.38926 3.63520 3.93930 4.10706 4.34000 4.36580 4.59768 4.95946 5.14868 5.16618 5.20315 5.23235 5.28334 5.29958 5.34445 5.40863 5.48541 5.50480 5.54534 5.70692 5.71411 5.73850 5.79558 5.83133 5.91436 5.95827 6.05506 6.07164 6.09215 6.14422 6.16931 6.27740 6.28508 6.31402 6.39353 6.60254 6.81512 6.95454 6.97715 7.03466 7.21218 7.39106 7.57155 7.64286 8.06543 8.08593 8.63195 8.74990 9.20263 9.57533 10.07716 10.78615 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.004638 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.958557 B = 6035.814877 C = 8278.121906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.125 4.125 6 C -0.036 4.036 7 C -0.145 4.145 8 C 0.566 3.434 9 O -0.556 6.556 10 N -0.691 5.691 11 C 0.152 3.848 12 H 0.081 0.919 13 C -0.163 4.163 14 C -0.115 4.115 15 C 0.081 3.919 16 H 0.077 0.923 17 C -0.182 4.182 18 N -0.657 5.657 19 C 0.051 3.949 20 C 0.444 3.556 21 O -0.578 6.578 22 N -0.564 5.564 23 C -0.291 4.291 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.902 5.902 27 Si 0.925 3.075 28 H -0.268 1.268 29 H -0.283 1.283 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.406 0.594 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.345 0.655 48 H 0.040 0.960 49 H 0.080 0.920 50 H 0.390 0.610 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 -8.558 12.985 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.032 4.032 3 C -0.163 4.163 4 C -0.110 4.110 5 C -0.143 4.143 6 C -0.054 4.054 7 C -0.148 4.148 8 C 0.355 3.645 9 O -0.437 6.437 10 N -0.342 5.342 11 C 0.047 3.953 12 H 0.099 0.901 13 C -0.222 4.222 14 C -0.153 4.153 15 C -0.029 4.029 16 H 0.095 0.905 17 C -0.241 4.241 18 N -0.289 5.289 19 C -0.081 4.081 20 C 0.230 3.770 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.421 4.421 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.753 3.247 28 H -0.193 1.193 29 H -0.209 1.209 30 H -0.208 1.208 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.244 0.756 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.165 0.835 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.223 0.777 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.058 -7.851 13.650 16.539 hybrid contribution 1.346 0.045 -1.576 2.073 sum -3.712 -7.805 12.074 14.849 Atomic orbital electron populations 1.21011 0.90774 1.02054 1.03290 1.19935 0.96307 0.91811 0.95184 1.20880 0.94255 0.97100 1.04051 1.21263 0.94197 0.98190 0.97383 1.20997 1.00068 0.92210 1.01019 1.21306 0.92437 0.98927 0.92762 1.19719 0.93838 0.92833 1.08429 1.18205 0.86753 0.83987 0.75560 1.90643 1.14024 1.87470 1.51570 1.45752 1.11075 1.04327 1.73070 1.20718 0.95040 0.83279 0.96243 0.90065 1.22207 1.01271 1.01609 0.97099 1.21920 0.99744 0.97756 0.95928 1.21618 0.97044 0.88210 0.96044 0.90511 1.22510 1.00735 0.99301 1.01569 1.60254 1.16074 1.26113 1.26491 1.21669 1.00803 0.95755 0.89898 1.19724 0.86314 0.86485 0.84504 1.90459 1.48449 1.71584 1.35682 1.41855 1.43673 1.22969 1.11556 1.19682 1.23993 0.99808 0.98625 0.87910 1.25228 0.98019 0.99613 0.95122 1.69619 1.42139 1.40192 1.02466 0.85862 0.79258 0.81232 0.78374 1.19258 1.20901 1.20814 0.91198 0.88967 0.93284 0.86315 0.86417 0.86035 0.84904 0.75555 0.92751 0.92177 0.92183 0.91290 0.90496 0.92339 0.92592 0.92424 0.83523 0.94187 0.90128 0.77690 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.74 36.01 0.31 -1.49 16 2 C -0.03 -0.54 5.91 -104.22 -0.62 -1.15 16 3 C -0.14 -2.30 9.66 -39.64 -0.38 -2.68 16 4 C -0.09 -1.46 10.04 -39.49 -0.40 -1.86 16 5 C -0.12 -2.12 10.03 -39.64 -0.40 -2.51 16 6 C -0.04 -0.61 8.22 -39.19 -0.32 -0.94 16 7 C -0.15 -2.56 5.87 -104.97 -0.62 -3.17 16 8 C 0.57 9.62 7.67 -12.33 -0.09 9.52 16 9 O -0.56 -10.44 12.99 5.32 0.07 -10.37 16 10 N -0.69 -9.50 3.75 -54.75 -0.21 -9.71 16 11 C 0.15 1.76 2.57 -67.93 -0.17 1.59 16 12 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 13 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 14 C -0.12 -1.06 4.54 -26.74 -0.12 -1.18 16 15 C 0.08 0.87 2.59 -67.72 -0.18 0.69 16 16 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 17 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 18 N -0.66 -8.84 3.48 -108.00 -0.38 -9.22 16 19 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 20 C 0.44 9.62 7.82 -10.99 -0.09 9.54 16 21 O -0.58 -13.25 13.66 5.54 0.08 -13.18 16 22 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 23 C -0.29 -7.88 9.68 -14.93 -0.14 -8.02 16 24 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 27 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.52 5.83 -51.93 -0.30 1.22 16 33 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.12 1.60 8.05 -52.49 -0.42 1.17 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 2.22 5.72 -52.48 -0.30 1.92 16 38 H 0.41 5.45 5.66 -40.82 -0.23 5.22 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.73 8.14 -51.94 -0.42 0.30 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.58 7.45 -51.93 -0.39 0.19 16 46 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 47 H 0.35 4.72 8.17 -39.29 -0.32 4.40 16 48 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 49 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 50 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 51 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -29.95 410.95 -9.29 -39.25 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -8.05 Total: 21.90 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.65 Total: -3.04 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.09 Total: -56.73 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.14 Total: -23.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.95 -9.29 -39.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133555705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.953 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds