Wall clock time and date at job start Wed Apr 1 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37980 * 120.07238 * 2 1 4 4 C 1.38337 * 120.14073 * 180.02562 * 3 2 1 5 5 C 1.38380 * 120.29819 * 359.97438 * 4 3 2 6 6 C 1.37944 * 120.14005 * 0.02589 * 5 4 3 7 7 C 1.39558 * 120.07382 * 179.71984 * 2 1 3 8 8 C 1.47849 * 120.14091 * 359.97438 * 7 2 1 9 9 O 1.21555 * 120.00113 * 5.55440 * 8 7 2 10 10 N 1.34773 * 119.99883 * 185.54627 * 8 7 2 11 11 C 1.46505 * 120.00180 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46759 * 35.00038 * 11 10 8 13 13 C 1.53002 * 109.46620 * 275.00229 * 11 10 8 14 14 C 1.52995 * 109.47176 * 154.99948 * 11 10 8 15 15 C 1.52998 * 109.47398 * 295.00294 * 14 11 10 16 16 H 1.09000 * 109.46624 * 304.99768 * 15 14 11 17 17 C 1.52998 * 109.47206 * 185.00200 * 15 14 11 18 18 N 1.46896 * 109.47274 * 64.99615 * 15 14 11 19 19 C 1.46900 * 111.00041 * 204.99891 * 18 15 14 20 20 C 1.50696 * 109.47245 * 180.02562 * 19 18 15 21 21 O 1.21295 * 120.00052 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00191 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00203 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00337 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00548 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99630 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00501 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47186 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46891 * 120.00030 * 27 25 23 30 30 H 1.48499 * 109.47171 * 239.99835 * 27 25 23 31 31 H 1.08998 * 109.47197 * 96.86156 * 1 2 3 32 32 H 1.09001 * 109.47061 * 216.86701 * 1 2 3 33 33 H 1.08996 * 109.46896 * 336.86138 * 1 2 3 34 34 H 1.07994 * 119.92877 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.85435 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.93379 * 180.02562 * 5 4 3 37 37 H 1.08005 * 120.06824 * 179.97438 * 6 5 4 38 38 H 0.97003 * 119.99904 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47399 * 299.99417 * 13 11 10 40 40 H 1.08989 * 109.47232 * 60.00139 * 13 11 10 41 41 H 1.09003 * 109.46384 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47328 * 55.00231 * 14 11 10 43 43 H 1.08999 * 109.46941 * 174.99583 * 14 11 10 44 44 H 1.08997 * 109.47505 * 59.99684 * 17 15 14 45 45 H 1.08996 * 109.47389 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.47314 * 299.99763 * 17 15 14 47 47 H 1.00903 * 110.99896 * 81.05565 * 18 15 14 48 48 H 1.08995 * 109.47618 * 300.00770 * 19 18 15 49 49 H 1.09001 * 109.46949 * 60.00502 * 19 18 15 50 50 H 0.97001 * 120.00102 * 359.97438 * 22 20 19 51 51 H 0.96993 * 120.00373 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2814 0.0018 -0.0005 6 6 3.6023 -1.1989 -0.0005 7 6 2.2064 -1.2077 0.0059 8 6 1.4720 -2.4908 0.0128 9 8 0.2607 -2.4984 -0.0886 10 7 2.1455 -3.6522 0.1312 11 6 1.4179 -4.9237 0.1375 12 1 0.5597 -4.8544 -0.5309 13 6 0.9354 -5.2281 1.5572 14 6 2.3450 -6.0442 -0.3375 15 6 2.7281 -5.8042 -1.7992 16 1 1.8240 -5.7042 -2.3998 17 6 3.5524 -6.9870 -2.3112 18 7 3.5225 -4.5728 -1.9013 19 6 3.4140 -3.9862 -3.2437 20 6 4.2408 -2.7280 -3.3104 21 8 4.8599 -2.3568 -2.3357 22 7 4.2922 -2.0152 -4.4531 23 6 5.0448 -0.8709 -4.5140 24 1 5.5961 -0.5403 -3.6461 25 6 5.0983 -0.1363 -5.6922 26 7 4.4279 -0.5388 -6.7484 27 14 6.1231 1.4232 -5.7749 28 1 6.7764 1.6564 -4.4619 29 1 7.1625 1.2774 -6.8255 30 1 5.2456 2.5753 -6.1033 31 1 -0.3633 -0.1228 -1.0203 32 1 -0.3633 -0.8222 0.6166 33 1 -0.3633 0.9450 0.4038 34 1 1.6585 2.1293 0.0004 35 1 4.1183 2.1330 -0.0010 36 1 5.3614 0.0099 -0.0005 37 1 4.1494 -2.1301 -0.0010 38 1 3.1121 -3.6461 0.2124 39 1 1.7936 -5.2974 2.2256 40 1 0.2749 -4.4299 1.8954 41 1 0.3944 -6.1744 1.5618 42 1 3.2454 -6.0557 0.2769 43 1 1.8325 -7.0020 -0.2487 44 1 2.9629 -7.9007 -2.2354 45 1 3.8249 -6.8163 -3.3527 46 1 4.4564 -7.0871 -1.7105 47 1 4.4869 -4.7435 -1.6583 48 1 3.7785 -4.6997 -3.9827 49 1 2.3712 -3.7476 -3.4527 50 1 3.7974 -2.3123 -5.2328 51 1 4.4649 -0.0258 -7.5708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133555705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:23 Heat of formation + Delta-G solvation = -70.031767 kcal Electronic energy + Delta-G solvation = -32489.070400 eV Core-core repulsion = 28387.186815 eV Total energy + Delta-G solvation = -4101.883585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25117 -40.08892 -39.35976 -38.22094 -36.13323 -35.67589 -33.57905 -33.19461 -33.04205 -31.86405 -30.66831 -27.94582 -27.77315 -27.55891 -25.60409 -24.71869 -22.92295 -22.01199 -21.55851 -21.13314 -20.88623 -19.81424 -18.55018 -17.62205 -17.34229 -16.78453 -16.43214 -16.36161 -16.13241 -15.94708 -15.79943 -15.63361 -15.33534 -15.23549 -14.78187 -14.37508 -14.22869 -14.14548 -13.92357 -13.80033 -13.54623 -13.45721 -13.32048 -13.14929 -12.95471 -12.87711 -12.82546 -12.69987 -12.54700 -12.47737 -12.31888 -12.17615 -12.09717 -11.87251 -11.68838 -11.56947 -11.40008 -10.41745 -10.16448 -9.97221 -9.90392 -9.65036 -9.48553 -9.09417 -8.40064 -5.85894 0.07569 0.57879 1.37175 1.41756 1.54948 2.09361 2.16847 2.31247 2.49829 3.01562 3.05036 3.29248 3.62283 3.75680 3.96133 4.00675 4.08915 4.12863 4.26084 4.29554 4.35839 4.43565 4.49662 4.49833 4.54232 4.64127 4.66456 4.69116 4.81207 4.82609 4.85481 4.91186 4.98235 5.00351 5.04642 5.09182 5.13525 5.29980 5.31890 5.33279 5.44013 5.47996 5.51932 5.66828 5.71490 5.87089 5.98526 6.11651 6.17894 6.55127 6.67822 6.85357 7.21329 7.50207 7.66895 8.20567 8.78419 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.004638 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.958557 B = 6035.814877 C = 8278.121906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.052 4.052 3 C -0.147 4.147 4 C -0.096 4.096 5 C -0.142 4.142 6 C -0.043 4.043 7 C -0.164 4.164 8 C 0.558 3.442 9 O -0.582 6.582 10 N -0.678 5.678 11 C 0.148 3.852 12 H 0.059 0.941 13 C -0.156 4.156 14 C -0.104 4.104 15 C 0.082 3.918 16 H 0.067 0.933 17 C -0.174 4.174 18 N -0.660 5.660 19 C 0.068 3.932 20 C 0.446 3.554 21 O -0.588 6.588 22 N -0.583 5.583 23 C -0.311 4.311 24 H 0.085 0.915 25 C -0.019 4.019 26 N -0.929 5.929 27 Si 0.985 3.015 28 H -0.267 1.267 29 H -0.275 1.275 30 H -0.278 1.278 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.409 0.591 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.347 0.653 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.389 0.611 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -9.452 13.871 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.053 4.053 3 C -0.165 4.165 4 C -0.114 4.114 5 C -0.160 4.160 6 C -0.062 4.062 7 C -0.167 4.167 8 C 0.346 3.654 9 O -0.465 6.465 10 N -0.329 5.329 11 C 0.044 3.956 12 H 0.077 0.923 13 C -0.214 4.214 14 C -0.142 4.142 15 C -0.028 4.028 16 H 0.085 0.915 17 C -0.233 4.233 18 N -0.292 5.292 19 C -0.065 4.065 20 C 0.233 3.767 21 O -0.472 6.472 22 N -0.221 5.221 23 C -0.441 4.441 24 H 0.103 0.897 25 C -0.218 4.218 26 N -0.572 5.572 27 Si 0.810 3.190 28 H -0.191 1.191 29 H -0.201 1.201 30 H -0.204 1.204 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.166 0.834 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.221 0.779 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.662 -8.795 14.562 17.639 hybrid contribution 1.212 0.243 -1.757 2.148 sum -3.450 -8.552 12.805 15.780 Atomic orbital electron populations 1.20913 0.90056 1.03033 1.02259 1.20275 0.97134 0.92307 0.95571 1.21221 0.94501 0.97736 1.03029 1.21599 0.94491 0.98870 0.96461 1.21227 1.00552 0.92747 1.01506 1.21329 0.92419 0.99163 0.93299 1.19964 0.94171 0.93609 1.08937 1.18287 0.86547 0.84727 0.75796 1.90622 1.14909 1.87865 1.53109 1.45773 1.11131 1.04412 1.71549 1.20909 0.94802 0.82974 0.96960 0.92252 1.22131 1.01440 1.01858 0.95982 1.21890 0.99885 0.97816 0.94591 1.21687 0.96376 0.87508 0.97216 0.91494 1.22417 1.00978 0.99169 1.00765 1.60244 1.16504 1.28024 1.24463 1.21425 0.99196 0.93685 0.92196 1.20628 0.85534 0.87203 0.83353 1.90447 1.48715 1.72168 1.35867 1.41959 1.44439 1.23213 1.12456 1.19650 1.24842 1.01240 0.98389 0.89728 1.25957 0.98994 1.02207 0.94625 1.69696 1.43280 1.41344 1.02852 0.84972 0.77934 0.77770 0.78370 1.19147 1.20078 1.20405 0.92660 0.90100 0.90644 0.83698 0.83853 0.85595 0.84999 0.75289 0.91569 0.94609 0.89810 0.90026 0.87570 0.90412 0.93793 0.91684 0.83394 0.92574 0.90627 0.77853 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.36 8.74 71.24 0.62 -2.73 16 2 C -0.05 -1.78 5.91 -19.61 -0.12 -1.90 16 3 C -0.15 -4.54 9.66 22.23 0.21 -4.32 16 4 C -0.10 -2.97 10.04 22.33 0.22 -2.75 16 5 C -0.14 -4.83 10.03 22.23 0.22 -4.61 16 6 C -0.04 -1.52 8.22 22.53 0.19 -1.33 16 7 C -0.16 -5.88 5.87 -20.09 -0.12 -6.00 16 8 C 0.56 19.38 7.67 86.79 0.67 20.05 16 9 O -0.58 -22.54 12.99 -3.89 -0.05 -22.59 16 10 N -0.68 -18.53 3.75 -445.40 -1.67 -20.20 16 11 C 0.15 3.25 2.57 44.99 0.12 3.36 16 12 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 13 C -0.16 -2.92 9.48 71.98 0.68 -2.24 16 14 C -0.10 -1.61 4.54 30.59 0.14 -1.47 16 15 C 0.08 1.58 2.59 44.91 0.12 1.70 16 16 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 17 C -0.17 -2.76 9.16 71.98 0.66 -2.10 16 18 N -0.66 -17.07 3.48 -495.60 -1.72 -18.80 16 19 C 0.07 2.22 5.96 85.56 0.51 2.73 16 20 C 0.45 19.51 7.82 87.66 0.69 20.20 16 21 O -0.59 -27.24 13.66 -3.08 -0.04 -27.28 16 22 N -0.58 -29.16 5.29 -306.99 -1.62 -30.78 16 23 C -0.31 -17.15 9.68 84.04 0.81 -16.34 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 26 N -0.93 -51.18 13.05 21.66 0.28 -50.90 16 27 Si 0.98 43.12 29.55 68.60 2.03 45.15 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 30 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.74 5.83 -2.39 -0.01 2.72 16 33 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.15 3.60 8.05 -2.91 -0.02 3.57 16 35 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.13 4.49 5.72 -2.91 -0.02 4.47 16 38 H 0.41 10.77 5.66 -92.71 -0.52 10.25 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 45 H 0.04 0.81 7.45 -2.39 -0.02 0.80 16 46 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 47 H 0.35 8.98 8.17 -89.69 -0.73 8.25 16 48 H 0.06 1.68 7.44 -2.39 -0.02 1.66 16 49 H 0.08 2.60 8.06 -2.39 -0.02 2.58 16 50 H 0.39 19.34 7.90 -92.71 -0.73 18.61 16 51 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -66.27 410.95 2.26 -64.01 By element: Atomic # 1 Polarization: 60.76 SS G_CDS: -1.03 Total: 59.73 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.09 Total: 1.66 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -4.73 Total: -120.68 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.09 Total: -49.88 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.27 2.26 -64.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133555705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.024 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds