Wall clock time and date at job start Wed Apr 1 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37975 * 120.07341 * 2 1 4 4 C 1.38343 * 120.14653 * 180.27332 * 3 2 1 5 5 C 1.38386 * 120.28811 * 359.69707 * 4 3 2 6 6 C 1.37931 * 120.14397 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07456 * 179.69179 * 2 1 3 8 8 C 1.47850 * 120.14593 * 0.03192 * 7 2 1 9 9 O 1.21560 * 119.99654 * 353.47261 * 8 7 2 10 10 N 1.34772 * 120.00422 * 173.47409 * 8 7 2 11 11 C 1.46498 * 120.00303 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46620 * 34.99771 * 11 10 8 13 13 C 1.53002 * 109.46807 * 275.00126 * 11 10 8 14 14 C 1.52999 * 109.47239 * 154.99954 * 11 10 8 15 15 C 1.53000 * 109.47213 * 295.00198 * 14 11 10 16 16 H 1.08998 * 109.47281 * 54.99766 * 15 14 11 17 17 C 1.52995 * 109.47270 * 174.99980 * 15 14 11 18 18 N 1.46902 * 109.47152 * 294.99990 * 15 14 11 19 19 C 1.46894 * 111.00106 * 155.00058 * 18 15 14 20 20 C 1.50706 * 109.47196 * 180.02562 * 19 18 15 21 21 O 1.21291 * 119.99505 * 359.97438 * 20 19 18 22 22 N 1.34768 * 120.00011 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99893 * 179.97438 * 22 20 19 24 24 H 1.07993 * 120.00169 * 0.02562 * 23 22 20 25 25 C 1.38946 * 119.99801 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00426 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99859 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46878 * 60.00568 * 27 25 23 29 29 H 1.48499 * 109.46994 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47167 * 300.00329 * 27 25 23 31 31 H 1.09002 * 109.47214 * 263.70986 * 1 2 3 32 32 H 1.08999 * 109.46753 * 23.71788 * 1 2 3 33 33 H 1.09000 * 109.46761 * 143.70922 * 1 2 3 34 34 H 1.08002 * 119.92752 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.85775 * 179.72062 * 4 3 2 36 36 H 1.07995 * 119.92237 * 180.02562 * 5 4 3 37 37 H 1.08003 * 120.06981 * 179.97438 * 6 5 4 38 38 H 0.97006 * 119.99434 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.47283 * 60.00200 * 13 11 10 40 40 H 1.09004 * 109.46609 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47251 * 299.99240 * 13 11 10 42 42 H 1.08996 * 109.47314 * 175.00014 * 14 11 10 43 43 H 1.08999 * 109.47033 * 55.00355 * 14 11 10 44 44 H 1.08998 * 109.47143 * 59.99701 * 17 15 14 45 45 H 1.08993 * 109.47330 * 179.97438 * 17 15 14 46 46 H 1.09001 * 109.47238 * 299.99995 * 17 15 14 47 47 H 1.00901 * 110.99785 * 278.95827 * 18 15 14 48 48 H 1.09006 * 109.47296 * 299.99754 * 19 18 15 49 49 H 1.08995 * 109.47244 * 60.00156 * 19 18 15 50 50 H 0.96998 * 120.00489 * 359.97438 * 22 20 19 51 51 H 0.97003 * 120.00618 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0057 5 6 4.2813 0.0017 -0.0051 6 6 3.6023 -1.1988 0.0017 7 6 2.2064 -1.2076 0.0065 8 6 1.4720 -2.4909 0.0127 9 8 0.2623 -2.4983 0.1318 10 7 2.1438 -3.6524 -0.1137 11 6 1.4162 -4.9239 -0.1070 12 1 0.4517 -4.7931 -0.5978 13 6 1.1962 -5.3779 1.3374 14 6 2.2302 -5.9813 -0.8556 15 6 2.3442 -5.5879 -2.3297 16 1 2.7609 -4.5837 -2.4067 17 6 3.2607 -6.5772 -3.0522 18 7 1.0118 -5.6137 -2.9479 19 6 0.9542 -4.7198 -4.1121 20 6 -0.4248 -4.7723 -4.7180 21 8 -1.2755 -5.4846 -4.2283 22 7 -0.7121 -4.0284 -5.8044 23 6 -1.9664 -4.0766 -6.3559 24 1 -2.7242 -4.7102 -5.9195 25 6 -2.2629 -3.3093 -7.4757 26 7 -1.3409 -2.5379 -8.0065 27 14 -3.9717 -3.3754 -8.2276 28 1 -4.9728 -2.9415 -7.2202 29 1 -4.0298 -2.4721 -9.4048 30 1 -4.2706 -4.7655 -8.6557 31 1 -0.3634 -0.1126 1.0215 32 1 -0.3633 0.9409 -0.4134 33 1 -0.3633 -0.8283 -0.6083 34 1 1.6584 2.1294 -0.0004 35 1 4.1183 2.1331 -0.0102 36 1 5.3612 0.0100 -0.0092 37 1 4.1494 -2.1300 0.0017 38 1 3.1092 -3.6464 -0.2084 39 1 0.6162 -4.6246 1.8707 40 1 0.6544 -6.3238 1.3424 41 1 2.1606 -5.5087 1.8281 42 1 1.7323 -6.9475 -0.7748 43 1 3.2268 -6.0486 -0.4194 44 1 2.8440 -7.5814 -2.9753 45 1 3.3416 -6.2972 -4.1025 46 1 4.2494 -6.5580 -2.5936 47 1 0.7487 -6.5544 -3.2008 48 1 1.1740 -3.6994 -3.7980 49 1 1.6887 -5.0385 -4.8516 50 1 -0.0317 -3.4590 -6.1963 51 1 -1.5480 -2.0019 -8.7881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133555706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:26 Heat of formation + Delta-G solvation = -80.575595 kcal Electronic energy + Delta-G solvation = -30907.034772 eV Core-core repulsion = 26804.693972 eV Total energy + Delta-G solvation = -4102.340800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41131 -40.25915 -39.47948 -38.32596 -36.36372 -35.85634 -33.68374 -33.33446 -33.13492 -31.93717 -30.86470 -27.98329 -27.96689 -27.60606 -25.70397 -24.85015 -23.05907 -22.06291 -21.58891 -21.32658 -21.08214 -19.94504 -18.75273 -17.80229 -17.28303 -16.89063 -16.58134 -16.42672 -16.30705 -16.10743 -15.88614 -15.77421 -15.46973 -15.21104 -14.88940 -14.58117 -14.37309 -14.25996 -14.01673 -13.89421 -13.60653 -13.54357 -13.33268 -13.23920 -13.04769 -12.96773 -12.89018 -12.83012 -12.66038 -12.61599 -12.45904 -12.14411 -12.00310 -11.98893 -11.72449 -11.64631 -11.52497 -10.59597 -10.37138 -10.10533 -10.03930 -9.83935 -9.61102 -9.22590 -8.48607 -5.97738 -0.07070 0.42180 1.37482 1.38851 1.50229 1.95940 2.02831 2.25686 2.27632 2.90855 2.94897 3.18167 3.54051 3.70130 3.80701 3.88713 3.92390 4.08379 4.17604 4.20336 4.31800 4.40744 4.41565 4.44776 4.50743 4.55921 4.57612 4.61766 4.72020 4.76215 4.79014 4.83490 4.87750 4.91008 5.01036 5.03373 5.16911 5.26167 5.28303 5.32371 5.37909 5.38101 5.41937 5.52128 5.62374 5.68405 5.91022 5.99522 6.15259 6.48998 6.57722 6.64961 7.10084 7.35357 7.53165 8.08961 8.68762 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.003095 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.245585 B = 9045.611394 C =10934.297393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.089 4.089 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.162 4.162 8 C 0.547 3.453 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.146 3.854 12 H 0.058 0.942 13 C -0.154 4.154 14 C -0.102 4.102 15 C 0.081 3.919 16 H 0.077 0.923 17 C -0.177 4.177 18 N -0.675 5.675 19 C 0.072 3.928 20 C 0.436 3.564 21 O -0.622 6.622 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.274 1.274 29 H -0.267 1.267 30 H -0.269 1.269 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.410 0.590 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.344 0.656 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.557 2.827 17.281 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.158 4.158 4 C -0.107 4.107 5 C -0.151 4.151 6 C -0.099 4.099 7 C -0.165 4.165 8 C 0.336 3.664 9 O -0.454 6.454 10 N -0.355 5.355 11 C 0.041 3.959 12 H 0.077 0.923 13 C -0.213 4.213 14 C -0.140 4.140 15 C -0.029 4.029 16 H 0.096 0.904 17 C -0.236 4.236 18 N -0.308 5.308 19 C -0.060 4.060 20 C 0.224 3.776 21 O -0.508 6.508 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.095 0.905 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.200 1.200 29 H -0.192 1.192 30 H -0.195 1.195 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.248 0.752 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.163 0.837 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.229 0.771 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.873 2.898 17.944 26.203 hybrid contribution -0.243 -0.101 -1.490 1.513 sum 18.630 2.797 16.454 25.013 Atomic orbital electron populations 1.20947 0.91518 1.02400 1.02487 1.20219 0.96380 0.92968 0.95570 1.21314 0.95438 0.97154 1.01906 1.21761 0.93566 0.99994 0.95394 1.21506 1.01784 0.91470 1.00327 1.21576 0.91479 1.00444 0.96395 1.19921 0.95064 0.92324 1.09191 1.18688 0.86805 0.84956 0.75960 1.90752 1.15860 1.87724 1.51015 1.45826 1.11085 1.05011 1.73539 1.20877 0.96421 0.82597 0.95982 0.92336 1.22101 1.02492 1.01007 0.95663 1.21847 1.01374 0.98005 0.92804 1.21733 0.86806 0.99779 0.94559 0.90448 1.22452 1.01235 0.99515 1.00357 1.60149 1.28076 1.13571 1.28960 1.21427 0.92487 0.99098 0.93001 1.20927 0.91418 0.83162 0.82111 1.90483 1.51223 1.45071 1.64071 1.41920 1.12801 1.40209 1.26113 1.19634 0.90125 1.26020 1.10853 0.90494 1.26043 1.03329 0.95152 0.96622 1.69665 1.35345 1.27499 1.23581 0.85004 0.77127 0.78567 0.77726 1.19974 1.19151 1.19453 0.91441 0.91192 0.92016 0.84123 0.82650 0.82119 0.82961 0.75242 0.94915 0.91135 0.90265 0.89934 0.87630 0.92221 0.93586 0.89450 0.83709 0.89636 0.91647 0.77142 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.73 71.24 0.62 -2.80 16 2 C -0.05 -1.29 5.91 -19.61 -0.12 -1.41 16 3 C -0.14 -2.69 9.66 22.23 0.21 -2.47 16 4 C -0.09 -1.24 10.04 22.33 0.22 -1.02 16 5 C -0.13 -1.67 10.03 22.23 0.22 -1.45 16 6 C -0.08 -1.27 9.53 22.52 0.21 -1.06 16 7 C -0.16 -3.97 5.87 -20.09 -0.12 -4.08 16 8 C 0.55 16.01 7.66 86.79 0.67 16.67 16 9 O -0.57 -22.35 13.02 -3.91 -0.05 -22.40 16 10 N -0.70 -15.08 4.40 -445.40 -1.96 -17.04 16 11 C 0.15 3.45 2.52 44.99 0.11 3.57 16 12 H 0.06 2.07 7.05 -2.38 -0.02 2.05 16 13 C -0.15 -3.21 9.48 71.98 0.68 -2.53 16 14 C -0.10 -1.75 4.43 30.59 0.14 -1.61 16 15 C 0.08 1.70 2.53 44.91 0.11 1.81 16 16 H 0.08 1.61 7.28 -2.39 -0.02 1.60 16 17 C -0.18 -2.95 9.16 71.98 0.66 -2.29 16 18 N -0.68 -21.65 5.24 -495.59 -2.60 -24.25 16 19 C 0.07 2.67 5.96 85.56 0.51 3.18 16 20 C 0.44 22.15 7.82 87.66 0.69 22.84 16 21 O -0.62 -36.49 15.78 -3.06 -0.05 -36.54 16 22 N -0.57 -31.16 5.29 -307.00 -1.62 -32.78 16 23 C -0.34 -20.07 9.68 84.04 0.81 -19.26 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 26 N -0.92 -51.29 13.05 21.66 0.28 -51.00 16 27 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.06 2.28 5.86 -2.39 -0.01 2.27 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.37 6.46 -2.91 -0.02 1.35 16 38 H 0.41 5.54 6.68 -92.70 -0.62 4.92 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 45 H 0.05 0.88 7.45 -2.39 -0.02 0.86 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.34 11.52 8.17 -89.69 -0.73 10.79 16 48 H 0.09 3.09 8.06 -2.38 -0.02 3.08 16 49 H 0.07 2.09 7.43 -2.39 -0.02 2.08 16 50 H 0.39 20.43 7.90 -92.71 -0.73 19.70 16 51 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -80.90 417.32 1.02 -79.88 By element: Atomic # 1 Polarization: 50.77 SS G_CDS: -1.12 Total: 49.65 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.11 Total: 7.90 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -5.90 Total: -125.07 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.10 Total: -58.93 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.90 1.02 -79.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133555706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.693 kcal (2) G-P(sol) polarization free energy of solvation -80.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds