Wall clock time and date at job start Wed Apr 1 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38376 * 119.93136 * 2 1 4 4 C 1.38337 * 120.29537 * 179.97438 * 3 2 1 5 5 C 1.37982 * 120.13973 * 359.74374 * 4 3 2 6 6 C 1.39550 * 119.85676 * 0.48918 * 5 4 3 7 7 C 1.47841 * 120.15039 * 179.78802 * 6 5 4 8 8 O 1.21551 * 120.00559 * 179.72527 * 7 6 5 9 9 N 1.34780 * 119.99673 * 359.72292 * 7 6 5 10 10 C 1.46503 * 120.00069 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46773 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47285 * 84.99941 * 10 9 7 13 13 C 1.53004 * 109.46987 * 205.00005 * 10 9 7 14 14 C 1.53002 * 109.47119 * 64.99735 * 13 10 9 15 15 H 1.09003 * 109.47094 * 54.99695 * 14 13 10 16 16 C 1.52994 * 109.47222 * 175.00007 * 14 13 10 17 17 N 1.46906 * 109.47092 * 295.00039 * 14 13 10 18 18 C 1.46901 * 110.99793 * 155.00227 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 C 1.37937 * 119.92207 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47076 * 270.02218 * 1 2 3 32 32 H 1.09005 * 109.47261 * 30.01840 * 1 2 3 33 33 H 1.08995 * 109.47654 * 150.01964 * 1 2 3 34 34 H 1.08000 * 119.85285 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.92889 * 180.02562 * 4 3 2 36 36 H 1.08006 * 120.07098 * 180.24871 * 5 4 3 37 37 H 0.97005 * 119.99744 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47153 * 59.99722 * 12 10 9 39 39 H 1.09003 * 109.47242 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46882 * 300.00037 * 12 10 9 41 41 H 1.08998 * 109.47091 * 305.00094 * 13 10 9 42 42 H 1.08995 * 109.46967 * 184.99516 * 13 10 9 43 43 H 1.09003 * 109.47340 * 59.99839 * 16 14 13 44 44 H 1.08995 * 109.47731 * 179.97438 * 16 14 13 45 45 H 1.08996 * 109.47268 * 300.00419 * 16 14 13 46 46 H 1.00898 * 110.99995 * 278.95304 * 17 14 13 47 47 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 48 48 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 49 49 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 51 51 H 1.07999 * 120.07471 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0191 0.0064 6 6 3.5911 -1.1938 0.0015 7 6 4.3350 -2.4714 0.0030 8 8 3.7312 -3.5263 0.0037 9 7 5.6828 -2.4663 0.0035 10 6 6.4201 -3.7323 0.0044 11 1 5.8752 -4.4696 0.5941 12 6 6.5686 -4.2371 -1.4322 13 6 7.8063 -3.5148 0.6145 14 6 7.6603 -3.1302 2.0882 15 1 7.0720 -3.8885 2.6050 16 6 9.0458 -3.0344 2.7299 17 7 6.9824 -1.8309 2.1904 18 6 6.3036 -1.6918 3.4857 19 6 5.6217 -0.3496 3.5538 20 8 5.6938 0.4156 2.6154 21 7 4.9310 0.0001 4.6571 22 6 4.3102 1.2210 4.7189 23 1 4.3751 1.9026 3.8836 24 6 3.5986 1.5817 5.8564 25 7 3.5201 0.7525 6.8729 26 14 2.7522 3.2449 5.9404 27 1 1.7547 3.3485 4.8452 28 1 2.0657 3.3854 7.2496 29 1 3.7630 4.3227 5.7928 30 6 2.1951 -1.1955 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1474 0.0009 36 1 5.3612 0.0273 0.0109 37 1 6.1646 -1.6244 0.0025 38 1 7.1134 -3.4998 -2.0219 39 1 7.1168 -5.1792 -1.4315 40 1 5.5810 -4.3920 -1.8668 41 1 8.3173 -2.7146 0.0791 42 1 8.3866 -4.4339 0.5346 43 1 9.6340 -2.2761 2.2131 44 1 8.9419 -2.7600 3.7797 45 1 9.5488 -3.9984 2.6541 46 1 7.6299 -1.0723 2.0382 47 1 7.0356 -1.7683 4.2897 48 1 5.5613 -2.4827 3.5937 49 1 4.8731 -0.6119 5.4073 50 1 3.0230 1.0043 7.6669 51 1 1.6550 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133568808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:34 Heat of formation + Delta-G solvation = -58.010567 kcal Electronic energy + Delta-G solvation = -32187.719489 eV Core-core repulsion = 28086.357182 eV Total energy + Delta-G solvation = -4101.362307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.89426 -38.59098 -38.08735 -37.01527 -34.81730 -33.83991 -32.77605 -31.52387 -31.14663 -30.64715 -29.79399 -26.89426 -26.53079 -26.16744 -23.92889 -23.75585 -21.39635 -21.22532 -20.72677 -19.64767 -19.19502 -17.85555 -17.18718 -16.29485 -15.99035 -15.64076 -15.19228 -14.85034 -14.80982 -14.51556 -14.34048 -14.15612 -14.00129 -13.74332 -13.56981 -13.27784 -13.25830 -13.02794 -12.75186 -12.67926 -12.37948 -12.14332 -12.12969 -12.00693 -11.79929 -11.58407 -11.52800 -11.37133 -11.25959 -11.18574 -11.00977 -10.80267 -10.72189 -10.59364 -10.44255 -10.18973 -9.46058 -9.44019 -8.76969 -8.47867 -8.35331 -8.22192 -7.96603 -7.89878 -6.38586 -3.78584 1.35735 1.84823 3.19911 3.25909 3.29383 3.35540 3.61609 3.94929 4.11223 4.34011 4.36604 4.59909 4.96234 5.11905 5.14074 5.15599 5.20339 5.27368 5.29273 5.31448 5.39742 5.48642 5.52336 5.54819 5.59462 5.71756 5.74164 5.78498 5.80071 5.82189 5.84114 5.92116 5.98791 6.06126 6.07268 6.09681 6.16761 6.28471 6.31629 6.33853 6.45347 6.78973 6.87533 6.93008 6.94846 7.21933 7.35572 7.57279 7.65188 8.05041 8.08859 8.64154 8.72658 9.20789 9.58272 10.08755 10.79340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008196 B = 0.004702 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.482191 B = 5953.541840 C = 8532.779563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.046 4.046 6 C -0.134 4.134 7 C 0.566 3.434 8 O -0.562 6.562 9 N -0.689 5.689 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.164 4.164 13 C -0.115 4.115 14 C 0.081 3.919 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.657 5.657 18 C 0.051 3.949 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.564 5.564 22 C -0.292 4.292 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.927 3.073 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.275 1.275 30 C -0.066 4.066 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.407 0.593 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.345 0.655 47 H 0.040 0.960 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.271 0.729 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -6.270 -12.682 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.065 4.065 6 C -0.137 4.137 7 C 0.354 3.646 8 O -0.443 6.443 9 N -0.341 5.341 10 C 0.046 3.954 11 H 0.099 0.901 12 C -0.222 4.222 13 C -0.153 4.153 14 C -0.030 4.030 15 H 0.095 0.905 16 C -0.241 4.241 17 N -0.289 5.289 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.461 6.461 21 N -0.201 5.201 22 C -0.422 4.422 23 H 0.119 0.881 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.754 3.246 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.200 1.200 30 C -0.085 4.085 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.245 0.755 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.165 0.835 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.223 0.777 50 H 0.081 0.919 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.829 -6.686 -13.447 15.774 hybrid contribution 0.573 1.017 1.621 1.998 sum 5.402 -5.669 -11.826 14.183 Atomic orbital electron populations 1.20739 0.91374 1.02179 1.02356 1.19740 0.95943 0.92989 1.02034 1.21147 0.94515 0.97249 0.98483 1.20983 0.93875 0.98277 1.00101 1.21186 0.99883 0.91285 0.94126 1.19839 0.94015 0.93109 1.06694 1.18217 0.82310 0.88576 0.75449 1.90689 1.68960 1.32810 1.51840 1.45735 1.05496 1.09399 1.73461 1.20734 0.91949 0.86995 0.95678 0.90069 1.22208 1.02237 1.00738 0.97028 1.21921 0.96212 1.01810 0.95387 1.21626 0.92980 0.92898 0.95455 0.90502 1.22509 0.98241 1.02071 1.01285 1.60248 1.33827 1.03040 1.31822 1.21672 0.97877 0.98251 0.90323 1.19728 0.84518 0.88369 0.84443 1.90470 1.65113 1.53382 1.37150 1.41843 1.45575 1.17371 1.15276 1.19576 1.27303 0.93329 1.01990 0.88056 1.25220 0.98003 0.99418 0.95289 1.69605 1.42546 1.36402 1.05902 0.85984 0.79413 0.81879 0.77342 1.19916 1.21059 1.20028 1.20992 0.92868 0.97746 0.96889 0.91217 0.91867 0.91837 0.86392 0.85968 0.85470 0.75462 0.92701 0.92127 0.92182 0.91265 0.90459 0.92427 0.92584 0.92327 0.83515 0.94188 0.90129 0.77685 0.91936 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 2 C -0.11 -1.70 5.87 -104.68 -0.61 -2.32 16 3 C -0.10 -1.52 9.69 -39.49 -0.38 -1.90 16 4 C -0.11 -1.89 10.03 -39.64 -0.40 -2.29 16 5 C -0.05 -0.78 8.44 -39.19 -0.33 -1.11 16 6 C -0.13 -2.37 5.87 -104.97 -0.62 -2.98 16 7 C 0.57 9.92 7.74 -12.33 -0.10 9.82 16 8 O -0.56 -11.28 16.01 5.32 0.09 -11.20 16 9 N -0.69 -9.69 3.75 -54.75 -0.21 -9.90 16 10 C 0.15 1.80 2.57 -67.93 -0.17 1.63 16 11 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 13 C -0.11 -1.07 4.54 -26.73 -0.12 -1.20 16 14 C 0.08 0.88 2.59 -67.71 -0.18 0.70 16 15 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 16 C -0.18 -1.72 9.16 37.15 0.34 -1.38 16 17 N -0.66 -8.99 3.48 -107.99 -0.38 -9.36 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 9.71 7.82 -10.98 -0.09 9.63 16 20 O -0.58 -13.42 14.51 5.55 0.08 -13.34 16 21 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 22 C -0.29 -7.93 9.68 -14.94 -0.14 -8.07 16 23 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 26 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 C -0.07 -1.15 9.24 -39.18 -0.36 -1.51 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.27 16 33 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.13 2.04 6.25 -52.48 -0.33 1.71 16 37 H 0.41 5.51 5.63 -40.82 -0.23 5.28 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 44 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.35 4.78 8.17 -39.29 -0.32 4.46 16 47 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 48 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.13 2.15 7.65 -52.49 -0.40 1.74 16 LS Contribution 417.97 15.07 6.30 6.30 Total: -1.00 -30.78 417.97 -9.22 -40.00 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -8.17 Total: 21.46 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.57 Total: -2.04 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.09 Total: -57.16 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -30.78 -9.22 -40.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133568808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.009 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds