Wall clock time and date at job start Wed Apr 1 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38376 * 119.93136 * 2 1 4 4 C 1.38337 * 120.29537 * 179.97438 * 3 2 1 5 5 C 1.37982 * 120.13973 * 359.74374 * 4 3 2 6 6 C 1.39550 * 119.85676 * 0.48918 * 5 4 3 7 7 C 1.47841 * 120.15039 * 179.78802 * 6 5 4 8 8 O 1.21551 * 120.00559 * 179.72527 * 7 6 5 9 9 N 1.34780 * 119.99673 * 359.72292 * 7 6 5 10 10 C 1.46503 * 120.00069 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46773 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47285 * 84.99941 * 10 9 7 13 13 C 1.53004 * 109.46987 * 205.00005 * 10 9 7 14 14 C 1.53002 * 109.47119 * 64.99735 * 13 10 9 15 15 H 1.09003 * 109.47094 * 54.99695 * 14 13 10 16 16 C 1.52994 * 109.47222 * 175.00007 * 14 13 10 17 17 N 1.46906 * 109.47092 * 295.00039 * 14 13 10 18 18 C 1.46901 * 110.99793 * 155.00227 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 C 1.37937 * 119.92207 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47076 * 270.02218 * 1 2 3 32 32 H 1.09005 * 109.47261 * 30.01840 * 1 2 3 33 33 H 1.08995 * 109.47654 * 150.01964 * 1 2 3 34 34 H 1.08000 * 119.85285 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.92889 * 180.02562 * 4 3 2 36 36 H 1.08006 * 120.07098 * 180.24871 * 5 4 3 37 37 H 0.97005 * 119.99744 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47153 * 59.99722 * 12 10 9 39 39 H 1.09003 * 109.47242 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46882 * 300.00037 * 12 10 9 41 41 H 1.08998 * 109.47091 * 305.00094 * 13 10 9 42 42 H 1.08995 * 109.46967 * 184.99516 * 13 10 9 43 43 H 1.09003 * 109.47340 * 59.99839 * 16 14 13 44 44 H 1.08995 * 109.47731 * 179.97438 * 16 14 13 45 45 H 1.08996 * 109.47268 * 300.00419 * 16 14 13 46 46 H 1.00898 * 110.99995 * 278.95304 * 17 14 13 47 47 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 48 48 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 49 49 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 51 51 H 1.07999 * 120.07471 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0191 0.0064 6 6 3.5911 -1.1938 0.0015 7 6 4.3350 -2.4714 0.0030 8 8 3.7312 -3.5263 0.0037 9 7 5.6828 -2.4663 0.0035 10 6 6.4201 -3.7323 0.0044 11 1 5.8752 -4.4696 0.5941 12 6 6.5686 -4.2371 -1.4322 13 6 7.8063 -3.5148 0.6145 14 6 7.6603 -3.1302 2.0882 15 1 7.0720 -3.8885 2.6050 16 6 9.0458 -3.0344 2.7299 17 7 6.9824 -1.8309 2.1904 18 6 6.3036 -1.6918 3.4857 19 6 5.6217 -0.3496 3.5538 20 8 5.6938 0.4156 2.6154 21 7 4.9310 0.0001 4.6571 22 6 4.3102 1.2210 4.7189 23 1 4.3751 1.9026 3.8836 24 6 3.5986 1.5817 5.8564 25 7 3.5201 0.7525 6.8729 26 14 2.7522 3.2449 5.9404 27 1 1.7547 3.3485 4.8452 28 1 2.0657 3.3854 7.2496 29 1 3.7630 4.3227 5.7928 30 6 2.1951 -1.1955 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1474 0.0009 36 1 5.3612 0.0273 0.0109 37 1 6.1646 -1.6244 0.0025 38 1 7.1134 -3.4998 -2.0219 39 1 7.1168 -5.1792 -1.4315 40 1 5.5810 -4.3920 -1.8668 41 1 8.3173 -2.7146 0.0791 42 1 8.3866 -4.4339 0.5346 43 1 9.6340 -2.2761 2.2131 44 1 8.9419 -2.7600 3.7797 45 1 9.5488 -3.9984 2.6541 46 1 7.6299 -1.0723 2.0382 47 1 7.0356 -1.7683 4.2897 48 1 5.5613 -2.4827 3.5937 49 1 4.8731 -0.6119 5.4073 50 1 3.0230 1.0043 7.6669 51 1 1.6550 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133568808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:33 Heat of formation + Delta-G solvation = -76.718152 kcal Electronic energy + Delta-G solvation = -32188.530710 eV Core-core repulsion = 28086.357182 eV Total energy + Delta-G solvation = -4102.173529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16874 -40.08650 -39.48336 -38.27626 -36.11452 -35.65627 -33.99380 -33.17768 -32.62811 -31.90605 -30.89847 -27.90147 -27.69515 -27.56836 -25.60610 -25.02332 -22.67424 -22.25857 -21.72029 -20.97052 -20.84231 -19.81251 -18.44439 -17.63833 -17.44871 -16.93656 -16.58900 -16.35378 -16.10004 -15.95229 -15.66612 -15.55477 -15.33703 -15.19542 -14.74969 -14.58006 -14.44437 -14.21283 -13.96269 -13.79832 -13.54743 -13.45840 -13.31777 -13.06649 -13.01944 -12.92243 -12.77598 -12.72405 -12.54481 -12.44314 -12.36081 -12.19090 -12.11681 -11.90499 -11.69973 -11.58808 -11.38455 -10.80830 -10.17331 -10.00286 -9.90973 -9.71840 -9.48893 -9.11038 -8.39436 -5.85641 0.03519 0.54184 1.40742 1.41925 1.51962 2.02840 2.16795 2.31690 2.44168 3.01093 3.04082 3.29510 3.61558 3.74302 3.92716 3.95427 4.04870 4.11302 4.26097 4.28867 4.34265 4.42122 4.46912 4.49383 4.53218 4.54001 4.63773 4.65052 4.78385 4.81225 4.81744 4.88584 4.93893 4.99334 5.04364 5.07631 5.08757 5.25755 5.30110 5.31490 5.41822 5.47243 5.48129 5.59755 5.65355 5.79210 5.97897 6.08616 6.17403 6.55147 6.67969 6.80257 7.21174 7.43895 7.66773 8.20481 8.78533 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008196 B = 0.004702 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.482191 B = 5953.541840 C = 8532.779563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.127 4.127 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.559 3.441 8 O -0.597 6.597 9 N -0.675 5.675 10 C 0.146 3.854 11 H 0.058 0.942 12 C -0.156 4.156 13 C -0.103 4.103 14 C 0.081 3.919 15 H 0.066 0.934 16 C -0.174 4.174 17 N -0.661 5.661 18 C 0.068 3.932 19 C 0.445 3.555 20 O -0.589 6.589 21 N -0.583 5.583 22 C -0.313 4.313 23 H 0.084 0.916 24 C -0.019 4.019 25 N -0.929 5.929 26 Si 0.985 3.015 27 H -0.272 1.272 28 H -0.278 1.278 29 H -0.270 1.270 30 C -0.087 4.087 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.347 0.653 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.389 0.611 50 H 0.273 0.727 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -6.002 -13.439 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.145 4.145 5 C -0.072 4.072 6 C -0.154 4.154 7 C 0.347 3.653 8 O -0.481 6.481 9 N -0.325 5.325 10 C 0.041 3.959 11 H 0.076 0.924 12 C -0.215 4.215 13 C -0.141 4.141 14 C -0.029 4.029 15 H 0.085 0.915 16 C -0.233 4.233 17 N -0.293 5.293 18 C -0.065 4.065 19 C 0.232 3.768 20 O -0.473 6.473 21 N -0.220 5.220 22 C -0.443 4.443 23 H 0.102 0.898 24 C -0.217 4.217 25 N -0.571 5.571 26 Si 0.810 3.190 27 H -0.197 1.197 28 H -0.203 1.203 29 H -0.195 1.195 30 C -0.106 4.106 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.167 0.833 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.222 0.778 50 H 0.082 0.918 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.193 -6.426 -14.226 16.794 hybrid contribution 0.237 0.881 1.771 1.993 sum 6.430 -5.545 -12.455 15.074 Atomic orbital electron populations 1.20796 0.89082 1.03925 1.02653 1.20125 0.97741 0.92437 1.00798 1.21496 0.94494 0.98287 0.97784 1.21267 0.94607 0.98608 1.00035 1.21249 1.00142 0.91259 0.94529 1.20036 0.94484 0.93576 1.07323 1.18345 0.83376 0.88084 0.75511 1.90657 1.69801 1.33764 1.53896 1.45752 1.04476 1.10555 1.71675 1.20948 0.92813 0.85364 0.96725 0.92407 1.22137 1.01292 1.02346 0.95677 1.21894 0.94672 1.03740 0.93815 1.21699 0.93551 0.90841 0.96784 0.91544 1.22414 0.97120 1.03442 1.00323 1.60237 1.34575 1.04574 1.29921 1.21429 0.97964 0.94533 0.92601 1.20628 0.83138 0.89803 0.83213 1.90452 1.65068 1.54429 1.37313 1.41953 1.46847 1.17017 1.16222 1.19569 1.28559 0.94288 1.01903 0.89775 1.25962 0.98376 1.02616 0.94773 1.69690 1.43296 1.37853 1.06290 0.85092 0.78430 0.78022 0.77490 1.19704 1.20272 1.19466 1.21157 0.93130 0.98303 0.98013 0.91462 0.89566 0.90757 0.83926 0.84841 0.85032 0.75042 0.91316 0.89658 0.94807 0.89847 0.87454 0.91623 0.93778 0.90375 0.83337 0.92514 0.90674 0.77840 0.91809 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 10.01 71.24 0.71 -1.92 16 2 C -0.11 -3.51 5.87 -19.90 -0.12 -3.63 16 3 C -0.10 -3.18 9.69 22.33 0.22 -2.96 16 4 C -0.13 -4.19 10.03 22.23 0.22 -3.97 16 5 C -0.05 -1.82 8.44 22.53 0.19 -1.63 16 6 C -0.15 -5.52 5.87 -20.09 -0.12 -5.64 16 7 C 0.56 20.18 7.74 86.78 0.67 20.85 16 8 O -0.60 -25.02 16.01 -3.88 -0.06 -25.08 16 9 N -0.67 -18.85 3.75 -445.40 -1.67 -20.52 16 10 C 0.15 3.30 2.57 44.99 0.12 3.41 16 11 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 12 C -0.16 -3.01 9.48 71.98 0.68 -2.33 16 13 C -0.10 -1.62 4.54 30.60 0.14 -1.48 16 14 C 0.08 1.58 2.59 44.91 0.12 1.70 16 15 H 0.07 1.48 7.80 -2.39 -0.02 1.46 16 16 C -0.17 -2.77 9.16 71.98 0.66 -2.11 16 17 N -0.66 -17.28 3.48 -495.56 -1.72 -19.01 16 18 C 0.07 2.23 5.97 85.56 0.51 2.74 16 19 C 0.45 19.63 7.82 87.66 0.69 20.31 16 20 O -0.59 -27.50 14.51 -3.07 -0.04 -27.55 16 21 N -0.58 -29.26 5.29 -306.98 -1.62 -30.89 16 22 C -0.31 -17.28 9.68 84.04 0.81 -16.46 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.02 -1.00 5.50 84.92 0.47 -0.54 16 25 N -0.93 -51.15 13.05 21.66 0.28 -50.87 16 26 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 C -0.09 -3.12 9.24 22.53 0.21 -2.91 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.68 8.08 -2.38 -0.02 1.67 16 33 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.13 4.24 6.25 -2.91 -0.02 4.22 16 37 H 0.41 10.86 5.63 -92.70 -0.52 10.34 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 44 H 0.04 0.82 7.45 -2.39 -0.02 0.80 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.35 9.04 8.17 -89.70 -0.73 8.30 16 47 H 0.06 1.71 7.44 -2.39 -0.02 1.69 16 48 H 0.08 2.61 8.06 -2.39 -0.02 2.59 16 49 H 0.39 19.41 7.90 -92.71 -0.73 18.67 16 50 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.12 4.31 7.65 -2.91 -0.02 4.29 16 Total: -1.00 -68.41 417.97 2.33 -66.07 By element: Atomic # 1 Polarization: 60.43 SS G_CDS: -1.03 Total: 59.40 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.18 Total: 3.44 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.73 Total: -121.28 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.11 Total: -52.63 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.41 2.33 -66.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133568808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.646 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds