Wall clock time and date at job start Wed Apr 1 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00128 * 2 1 4 4 N 1.34783 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.39954 * 120.00093 * 185.51813 * 4 2 1 6 6 C 1.38635 * 119.99786 * 24.86270 * 5 4 2 7 7 C 1.39461 * 119.77801 * 180.28992 * 6 5 4 8 8 C 1.47857 * 120.11062 * 179.69879 * 7 6 5 9 9 O 1.21552 * 120.00229 * 359.72866 * 8 7 6 10 10 N 1.34778 * 120.00072 * 179.72799 * 8 7 6 11 11 C 1.46501 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47085 * 35.00364 * 11 10 8 13 13 C 1.52997 * 109.47405 * 274.99801 * 11 10 8 14 14 C 1.53002 * 109.46596 * 155.00172 * 11 10 8 15 15 C 1.52998 * 109.47504 * 294.99750 * 14 11 10 16 16 H 1.09005 * 109.46789 * 55.00176 * 15 14 11 17 17 C 1.52993 * 109.47471 * 175.00415 * 15 14 11 18 18 N 1.46505 * 109.47181 * 295.00844 * 15 14 11 19 19 C 1.36938 * 120.00118 * 155.00181 * 18 15 14 20 20 H 1.07995 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99848 * 179.97438 * 19 18 15 22 22 N 1.31617 * 119.99847 * 359.72204 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47140 * 269.72369 * 23 21 19 25 25 H 1.48494 * 109.46770 * 29.72383 * 23 21 19 26 26 H 1.48498 * 109.46703 * 149.72392 * 23 21 19 27 27 C 1.39613 * 119.77677 * 359.42827 * 7 6 5 28 28 C 1.37987 * 119.99487 * 0.27580 * 27 7 6 29 29 C 1.38245 * 120.22328 * 359.97438 * 28 27 7 30 30 C 1.50697 * 119.89146 * 180.02562 * 29 28 27 31 31 H 1.09004 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47310 * 299.99972 * 1 2 3 33 33 H 1.08999 * 109.47200 * 60.00318 * 1 2 3 34 34 H 0.97004 * 119.99555 * 5.52385 * 4 2 1 35 35 H 1.08002 * 120.11435 * 0.02562 * 6 5 4 36 36 H 0.97003 * 119.99461 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47192 * 300.00507 * 13 11 10 38 38 H 1.09004 * 109.46664 * 59.99981 * 13 11 10 39 39 H 1.08995 * 109.47285 * 180.02562 * 13 11 10 40 40 H 1.09008 * 109.46550 * 174.99991 * 14 11 10 41 41 H 1.08992 * 109.47818 * 55.00195 * 14 11 10 42 42 H 1.09005 * 109.47309 * 60.00079 * 17 15 14 43 43 H 1.09002 * 109.47571 * 180.02562 * 17 15 14 44 44 H 1.08997 * 109.47012 * 299.99900 * 17 15 14 45 45 H 0.96998 * 119.99459 * 334.99354 * 18 15 14 46 46 H 0.96996 * 120.00150 * 0.27227 * 22 21 19 47 47 H 1.07997 * 120.00224 * 180.28863 * 27 7 6 48 48 H 1.07995 * 119.88330 * 180.02562 * 28 27 7 49 49 H 1.09004 * 109.47431 * 89.99497 * 30 29 28 50 50 H 1.09001 * 109.47758 * 209.99700 * 30 29 28 51 51 H 1.09009 * 109.46891 * 329.99806 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5755 -1.1700 0.1171 6 6 4.2221 -0.1073 0.7292 7 6 5.6124 -0.1120 0.8374 8 6 6.3100 1.0207 1.4829 9 8 5.6719 1.9603 1.9158 10 7 7.6534 1.0113 1.5912 11 6 8.3445 2.1333 2.2313 12 1 7.7324 2.5200 3.0460 13 6 8.5819 3.2402 1.2020 14 6 9.6882 1.6554 2.7853 15 6 9.4467 0.6384 3.9025 16 1 8.8185 -0.1700 3.5283 17 6 10.7866 0.0680 4.3715 18 7 8.7763 1.2975 5.0262 19 6 8.0113 0.5635 5.8930 20 1 7.9018 -0.5010 5.7480 21 6 7.3766 1.1879 6.9580 22 7 7.5146 2.4844 7.1378 23 14 6.3325 0.1869 8.1400 24 1 4.9296 0.1528 7.6542 25 1 6.8631 -1.1978 8.2181 26 1 6.3748 0.8101 9.4872 27 6 6.3430 -1.1925 0.3394 28 6 5.6896 -2.2482 -0.2627 29 6 4.3117 -2.2411 -0.3746 30 6 3.6057 -3.3982 -1.0329 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6991 -2.0054 -0.0800 35 1 3.6512 0.7234 1.1171 36 1 8.1626 0.2616 1.2454 37 1 9.1940 2.8535 0.3872 38 1 7.6246 3.5806 0.8073 39 1 9.0965 4.0748 1.6781 40 1 10.2410 2.5069 3.1823 41 1 10.2649 1.1881 1.9871 42 1 11.4147 0.8764 4.7457 43 1 10.6145 -0.6569 5.1671 44 1 11.2852 -0.4224 3.5355 45 1 8.8745 2.2537 5.1562 46 1 8.0566 3.0043 6.5239 47 1 7.4195 -1.2020 0.4254 48 1 6.2565 -3.0832 -0.6469 49 1 3.3591 -4.1485 -0.2816 50 1 2.6901 -3.0436 -1.5063 51 1 4.2572 -3.8398 -1.7871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134422196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:51 Heat of formation + Delta-G solvation = -42.045256 kcal Electronic energy + Delta-G solvation = -31103.176088 eV Core-core repulsion = 27002.506089 eV Total energy + Delta-G solvation = -4100.669999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95381 -39.65939 -38.38217 -36.81417 -35.06972 -34.54658 -32.91097 -32.23723 -31.26109 -30.49566 -28.96643 -28.25296 -27.28740 -26.31521 -23.52650 -23.30954 -22.77369 -21.18076 -20.72231 -20.22818 -19.79840 -18.32168 -17.32873 -17.22833 -16.42726 -16.09704 -15.68256 -15.34375 -14.85427 -14.79866 -14.54878 -14.22111 -14.13317 -14.03445 -13.68719 -13.54663 -13.49958 -13.11055 -13.00311 -12.97505 -12.71029 -12.63018 -12.20017 -12.09783 -11.97080 -11.82534 -11.66452 -11.63413 -11.59764 -10.97541 -10.73656 -10.64494 -10.42564 -10.37738 -10.03733 -9.96328 -9.92211 -9.53656 -9.06221 -8.87428 -8.80777 -8.62648 -8.23174 -6.91197 -5.97830 -2.96741 0.78639 1.22650 2.31042 2.75386 3.09239 3.46194 3.57413 3.64186 3.76375 3.95577 4.38635 4.53356 4.60126 4.76275 4.76898 4.88231 4.96001 5.04720 5.06632 5.16871 5.21744 5.26398 5.39178 5.42702 5.45713 5.50953 5.60988 5.68217 5.72896 5.83163 5.88006 5.94661 5.99386 6.03227 6.11466 6.18309 6.24070 6.26969 6.35553 6.38040 6.44282 6.53196 6.69232 6.81059 6.85797 6.95116 7.05844 7.09226 7.82235 7.86492 7.91731 8.61767 8.87749 9.35108 10.21176 10.35874 11.50908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.003262 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.952800 B = 8581.911844 C = 9652.614172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.504 3.496 3 O -0.513 6.513 4 N -0.670 5.670 5 C 0.136 3.864 6 C -0.069 4.069 7 C -0.108 4.108 8 C 0.557 3.443 9 O -0.524 6.524 10 N -0.712 5.712 11 C 0.145 3.855 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.047 0.953 17 C -0.164 4.164 18 N -0.731 5.731 19 C -0.324 4.324 20 H 0.061 0.939 21 C -0.044 4.044 22 N -0.945 5.945 23 Si 1.079 2.921 24 H -0.297 1.297 25 H -0.296 1.296 26 H -0.288 1.288 27 C -0.101 4.101 28 C -0.107 4.107 29 C -0.101 4.101 30 C -0.115 4.115 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.411 0.589 35 H 0.159 0.841 36 H 0.393 0.607 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.365 0.635 46 H 0.255 0.745 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.074 0.926 50 H 0.063 0.937 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -12.557 -21.477 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.387 6.387 4 N -0.316 5.316 5 C 0.042 3.958 6 C -0.090 4.090 7 C -0.112 4.112 8 C 0.343 3.657 9 O -0.400 6.400 10 N -0.363 5.363 11 C 0.041 3.959 12 H 0.120 0.880 13 C -0.220 4.220 14 C -0.171 4.171 15 C 0.067 3.933 16 H 0.065 0.935 17 C -0.225 4.225 18 N -0.374 5.374 19 C -0.455 4.455 20 H 0.079 0.921 21 C -0.242 4.242 22 N -0.590 5.590 23 Si 0.910 3.090 24 H -0.224 1.224 25 H -0.223 1.223 26 H -0.215 1.215 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.104 4.104 30 C -0.172 4.172 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.177 0.823 36 H 0.227 0.773 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.199 0.801 46 H 0.066 0.934 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.405 -11.223 -19.781 24.246 hybrid contribution 1.127 -0.771 -1.491 2.022 sum -7.278 -11.994 -21.272 25.482 Atomic orbital electron populations 1.21861 0.90540 1.04473 1.05939 1.21100 0.91040 0.83172 0.75468 1.90797 1.70061 1.31218 1.46628 1.43685 1.05201 1.10022 1.72690 1.17468 0.82788 0.96136 0.99419 1.21511 0.93544 0.98704 0.95262 1.19927 0.93903 0.95692 1.01670 1.18118 0.82280 0.86145 0.79129 1.90810 1.65917 1.35838 1.47425 1.45843 1.06237 1.23431 1.60796 1.21005 0.93890 0.85757 0.95252 0.87983 1.22189 1.01815 0.98744 0.99217 1.22194 0.95569 1.00700 0.98633 1.20157 0.92073 0.93504 0.87583 0.93502 1.22440 0.99202 1.00747 1.00076 1.42399 1.58335 1.06990 1.29695 1.19977 1.25395 0.92692 1.07483 0.92109 1.25648 1.01466 0.97901 0.99167 1.70828 1.42576 1.05717 1.39903 0.83255 0.75738 0.73712 0.76272 1.22444 1.22316 1.21453 1.21263 0.99822 0.93138 0.97852 1.20716 0.92896 0.98636 1.00329 1.19728 0.93978 0.96296 1.00364 1.20762 1.00331 0.95742 1.00361 0.90391 0.88025 0.88334 0.75282 0.82334 0.77278 0.93059 0.92366 0.91772 0.90731 0.91913 0.93675 0.92859 0.94627 0.80129 0.93373 0.85517 0.85114 0.90778 0.91847 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.39 36.00 0.37 -0.62 16 2 C 0.50 5.55 7.74 -10.98 -0.09 5.46 16 3 O -0.51 -8.43 14.26 5.55 0.08 -8.35 16 4 N -0.67 -6.33 4.98 -9.89 -0.05 -6.38 16 5 C 0.14 1.70 6.41 -83.74 -0.54 1.17 16 6 C -0.07 -1.15 8.26 -38.98 -0.32 -1.47 16 7 C -0.11 -1.74 5.87 -104.99 -0.62 -2.36 16 8 C 0.56 10.65 7.74 -12.32 -0.10 10.56 16 9 O -0.52 -12.48 16.01 5.32 0.09 -12.39 16 10 N -0.71 -11.56 4.40 -54.75 -0.24 -11.80 16 11 C 0.14 2.52 2.52 -67.93 -0.17 2.35 16 12 H 0.10 2.30 7.05 -51.93 -0.37 1.93 16 13 C -0.16 -2.40 9.48 37.16 0.35 -2.05 16 14 C -0.13 -2.11 4.29 -26.73 -0.11 -2.22 16 15 C 0.18 3.49 2.84 -67.93 -0.19 3.30 16 16 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 17 C -0.16 -2.98 9.49 37.15 0.35 -2.62 16 18 N -0.73 -18.51 4.49 -53.43 -0.24 -18.75 16 19 C -0.32 -9.38 9.93 -15.06 -0.15 -9.53 16 20 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.04 -1.34 5.50 -17.43 -0.10 -1.43 16 22 N -0.94 -30.39 13.70 55.49 0.76 -29.63 16 23 Si 1.08 27.42 29.92 -169.99 -5.09 22.33 16 24 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.30 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 C -0.10 -1.23 9.54 -39.16 -0.37 -1.60 16 28 C -0.11 -1.07 9.67 -39.67 -0.38 -1.46 16 29 C -0.10 -1.01 5.90 -104.36 -0.62 -1.62 16 30 C -0.12 -0.69 9.44 36.00 0.34 -0.35 16 31 H 0.08 0.22 7.92 -51.93 -0.41 -0.19 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 2.22 7.22 -40.82 -0.29 1.92 16 35 H 0.16 3.12 5.38 -52.49 -0.28 2.83 16 36 H 0.39 5.07 6.63 -40.82 -0.27 4.80 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.37 9.66 6.63 -40.82 -0.27 9.39 16 46 H 0.25 8.08 6.77 -40.82 -0.28 7.80 16 47 H 0.13 1.23 6.40 -52.49 -0.34 0.90 16 48 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.30 6.96 -51.93 -0.36 -0.06 16 51 H 0.07 0.36 8.08 -51.92 -0.42 -0.06 16 LS Contribution 416.13 15.07 6.27 6.27 Total: -1.00 -39.75 416.13 -8.72 -48.47 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.96 Total: 14.72 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.33 Total: -4.50 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.23 Total: -66.55 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.16 Total: -20.74 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -5.09 Total: 22.33 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -39.75 -8.72 -48.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134422196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.425 kcal (2) G-P(sol) polarization free energy of solvation -39.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds