Wall clock time and date at job start Wed Apr 1 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00128 * 2 1 4 4 N 1.34783 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.39954 * 120.00093 * 185.51813 * 4 2 1 6 6 C 1.38635 * 119.99786 * 24.86270 * 5 4 2 7 7 C 1.39461 * 119.77801 * 180.28992 * 6 5 4 8 8 C 1.47857 * 120.11062 * 179.69879 * 7 6 5 9 9 O 1.21552 * 120.00229 * 359.72866 * 8 7 6 10 10 N 1.34778 * 120.00072 * 179.72799 * 8 7 6 11 11 C 1.46501 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47085 * 35.00364 * 11 10 8 13 13 C 1.52997 * 109.47405 * 274.99801 * 11 10 8 14 14 C 1.53002 * 109.46596 * 155.00172 * 11 10 8 15 15 C 1.52998 * 109.47504 * 294.99750 * 14 11 10 16 16 H 1.09005 * 109.46789 * 55.00176 * 15 14 11 17 17 C 1.52993 * 109.47471 * 175.00415 * 15 14 11 18 18 N 1.46505 * 109.47181 * 295.00844 * 15 14 11 19 19 C 1.36938 * 120.00118 * 155.00181 * 18 15 14 20 20 H 1.07995 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99848 * 179.97438 * 19 18 15 22 22 N 1.31617 * 119.99847 * 359.72204 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47140 * 269.72369 * 23 21 19 25 25 H 1.48494 * 109.46770 * 29.72383 * 23 21 19 26 26 H 1.48498 * 109.46703 * 149.72392 * 23 21 19 27 27 C 1.39613 * 119.77677 * 359.42827 * 7 6 5 28 28 C 1.37987 * 119.99487 * 0.27580 * 27 7 6 29 29 C 1.38245 * 120.22328 * 359.97438 * 28 27 7 30 30 C 1.50697 * 119.89146 * 180.02562 * 29 28 27 31 31 H 1.09004 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47310 * 299.99972 * 1 2 3 33 33 H 1.08999 * 109.47200 * 60.00318 * 1 2 3 34 34 H 0.97004 * 119.99555 * 5.52385 * 4 2 1 35 35 H 1.08002 * 120.11435 * 0.02562 * 6 5 4 36 36 H 0.97003 * 119.99461 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47192 * 300.00507 * 13 11 10 38 38 H 1.09004 * 109.46664 * 59.99981 * 13 11 10 39 39 H 1.08995 * 109.47285 * 180.02562 * 13 11 10 40 40 H 1.09008 * 109.46550 * 174.99991 * 14 11 10 41 41 H 1.08992 * 109.47818 * 55.00195 * 14 11 10 42 42 H 1.09005 * 109.47309 * 60.00079 * 17 15 14 43 43 H 1.09002 * 109.47571 * 180.02562 * 17 15 14 44 44 H 1.08997 * 109.47012 * 299.99900 * 17 15 14 45 45 H 0.96998 * 119.99459 * 334.99354 * 18 15 14 46 46 H 0.96996 * 120.00150 * 0.27227 * 22 21 19 47 47 H 1.07997 * 120.00224 * 180.28863 * 27 7 6 48 48 H 1.07995 * 119.88330 * 180.02562 * 28 27 7 49 49 H 1.09004 * 109.47431 * 89.99497 * 30 29 28 50 50 H 1.09001 * 109.47758 * 209.99700 * 30 29 28 51 51 H 1.09009 * 109.46891 * 329.99806 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5755 -1.1700 0.1171 6 6 4.2221 -0.1073 0.7292 7 6 5.6124 -0.1120 0.8374 8 6 6.3100 1.0207 1.4829 9 8 5.6719 1.9603 1.9158 10 7 7.6534 1.0113 1.5912 11 6 8.3445 2.1333 2.2313 12 1 7.7324 2.5200 3.0460 13 6 8.5819 3.2402 1.2020 14 6 9.6882 1.6554 2.7853 15 6 9.4467 0.6384 3.9025 16 1 8.8185 -0.1700 3.5283 17 6 10.7866 0.0680 4.3715 18 7 8.7763 1.2975 5.0262 19 6 8.0113 0.5635 5.8930 20 1 7.9018 -0.5010 5.7480 21 6 7.3766 1.1879 6.9580 22 7 7.5146 2.4844 7.1378 23 14 6.3325 0.1869 8.1400 24 1 4.9296 0.1528 7.6542 25 1 6.8631 -1.1978 8.2181 26 1 6.3748 0.8101 9.4872 27 6 6.3430 -1.1925 0.3394 28 6 5.6896 -2.2482 -0.2627 29 6 4.3117 -2.2411 -0.3746 30 6 3.6057 -3.3982 -1.0329 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6991 -2.0054 -0.0800 35 1 3.6512 0.7234 1.1171 36 1 8.1626 0.2616 1.2454 37 1 9.1940 2.8535 0.3872 38 1 7.6246 3.5806 0.8073 39 1 9.0965 4.0748 1.6781 40 1 10.2410 2.5069 3.1823 41 1 10.2649 1.1881 1.9871 42 1 11.4147 0.8764 4.7457 43 1 10.6145 -0.6569 5.1671 44 1 11.2852 -0.4224 3.5355 45 1 8.8745 2.2537 5.1562 46 1 8.0566 3.0043 6.5239 47 1 7.4195 -1.2020 0.4254 48 1 6.2565 -3.0832 -0.6469 49 1 3.3591 -4.1485 -0.2816 50 1 2.6901 -3.0436 -1.5063 51 1 4.2572 -3.8398 -1.7871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134422196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:50 Heat of formation + Delta-G solvation = -71.798082 kcal Electronic energy + Delta-G solvation = -31104.466268 eV Core-core repulsion = 27002.506089 eV Total energy + Delta-G solvation = -4101.960178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92507 -40.96569 -39.44066 -38.42397 -36.32520 -36.04820 -34.25868 -33.72481 -32.26845 -31.67928 -30.19462 -29.71678 -28.14272 -27.67836 -25.58346 -24.45059 -23.81656 -22.48513 -21.64211 -21.57391 -21.30590 -19.60918 -19.30168 -18.16925 -17.47157 -17.37628 -16.81157 -16.64759 -16.30012 -16.08168 -15.98490 -15.62076 -15.45518 -15.28457 -14.91879 -14.70624 -14.66015 -14.49764 -14.43749 -13.61302 -13.50864 -13.47786 -13.25366 -13.23757 -13.18600 -12.96994 -12.93387 -12.82817 -12.68863 -12.55103 -12.45755 -12.21123 -11.93138 -11.89286 -11.70364 -11.60429 -11.20633 -11.04658 -10.93127 -10.93007 -10.17100 -9.77794 -9.15065 -9.06982 -8.37124 -5.27997 -0.24081 0.23704 1.42951 1.49252 1.61846 1.74611 1.87383 1.97492 2.18161 2.69172 2.82208 3.42466 3.56733 3.69508 3.71897 3.82912 3.85275 3.95260 4.01141 4.10491 4.24607 4.27436 4.40432 4.43195 4.45082 4.57577 4.58077 4.68239 4.69175 4.72464 4.81379 4.83369 4.86109 4.91696 5.00230 5.01987 5.09109 5.15988 5.20610 5.23174 5.31242 5.32061 5.34010 5.40490 5.52010 5.53893 5.62495 5.90770 6.35300 6.51291 6.53807 7.05724 7.14083 7.23639 8.04636 8.15578 9.15546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.003262 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.952800 B = 8581.911844 C = 9652.614172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.493 3.507 3 O -0.579 6.579 4 N -0.655 5.655 5 C 0.125 3.875 6 C -0.106 4.106 7 C -0.142 4.142 8 C 0.547 3.453 9 O -0.592 6.592 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.039 0.961 13 C -0.151 4.151 14 C -0.117 4.117 15 C 0.168 3.832 16 H 0.040 0.960 17 C -0.154 4.154 18 N -0.744 5.744 19 C -0.314 4.314 20 H 0.061 0.939 21 C -0.111 4.111 22 N -0.980 5.980 23 Si 1.122 2.878 24 H -0.298 1.298 25 H -0.267 1.267 26 H -0.290 1.290 27 C -0.095 4.095 28 C -0.100 4.100 29 C -0.084 4.084 30 C -0.115 4.115 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.432 0.568 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.042 0.958 43 H 0.028 0.972 44 H 0.081 0.919 45 H 0.355 0.645 46 H 0.242 0.758 47 H 0.153 0.847 48 H 0.177 0.823 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -17.405 -24.361 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.284 3.716 3 O -0.458 6.458 4 N -0.302 5.302 5 C 0.030 3.970 6 C -0.127 4.127 7 C -0.145 4.145 8 C 0.335 3.665 9 O -0.474 6.474 10 N -0.347 5.347 11 C 0.041 3.959 12 H 0.057 0.943 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.060 3.940 16 H 0.059 0.941 17 C -0.213 4.213 18 N -0.387 5.387 19 C -0.446 4.446 20 H 0.079 0.921 21 C -0.302 4.302 22 N -0.629 5.629 23 Si 0.948 3.052 24 H -0.225 1.225 25 H -0.192 1.192 26 H -0.216 1.216 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.086 4.086 30 C -0.171 4.171 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.273 0.727 35 H 0.129 0.871 36 H 0.250 0.750 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.187 0.813 46 H 0.053 0.947 47 H 0.171 0.829 48 H 0.194 0.806 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.332 -16.190 -22.728 28.852 hybrid contribution 0.816 0.630 -0.730 1.263 sum -6.516 -15.560 -23.458 28.893 Atomic orbital electron populations 1.21912 0.86252 1.07310 1.06296 1.22140 0.93090 0.82512 0.73826 1.90791 1.71737 1.33645 1.49587 1.43629 1.04251 1.10757 1.71569 1.17612 0.84299 0.95848 0.99272 1.21313 0.94047 0.99393 0.97940 1.19796 0.93948 0.96441 1.04363 1.18819 0.82968 0.86310 0.78372 1.90762 1.67379 1.38616 1.50601 1.45688 1.05524 1.23710 1.59749 1.20862 0.93655 0.86938 0.94450 0.94266 1.22090 1.01168 0.98237 0.99438 1.22105 0.94893 1.00096 0.98466 1.20478 0.92433 0.94103 0.87004 0.94148 1.22273 0.97922 1.00192 1.00956 1.42631 1.58637 1.06546 1.30846 1.20293 1.24232 0.92851 1.07248 0.92109 1.27022 1.03310 0.98160 1.01704 1.70939 1.44471 1.06883 1.40617 0.82705 0.74308 0.73949 0.74265 1.22542 1.19171 1.21617 1.21552 1.00970 0.92097 0.96828 1.21282 0.93181 0.98733 0.98575 1.20295 0.94320 0.96064 0.97965 1.20922 1.00918 0.94203 1.01095 0.86292 0.88283 0.87162 0.72682 0.87093 0.74979 0.89426 0.95019 0.90816 0.90334 0.86919 0.93917 0.95265 0.90020 0.81321 0.94715 0.82921 0.80575 0.88804 0.90540 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.39 71.23 0.74 -0.99 16 2 C 0.49 11.41 7.74 87.65 0.68 12.08 16 3 O -0.58 -21.28 14.26 -3.05 -0.04 -21.33 16 4 N -0.65 -11.99 4.98 -303.60 -1.51 -13.50 16 5 C 0.12 3.12 6.41 38.11 0.24 3.36 16 6 C -0.11 -3.81 8.26 22.66 0.19 -3.62 16 7 C -0.14 -4.83 5.87 -20.10 -0.12 -4.95 16 8 C 0.55 22.69 7.74 86.79 0.67 23.36 16 9 O -0.59 -31.82 16.01 -3.88 -0.06 -31.88 16 10 N -0.69 -23.04 4.40 -445.40 -1.96 -25.00 16 11 C 0.15 5.21 2.52 44.99 0.11 5.32 16 12 H 0.04 1.92 7.05 -2.39 -0.02 1.91 16 13 C -0.15 -4.53 9.48 71.98 0.68 -3.85 16 14 C -0.12 -3.53 4.29 30.59 0.13 -3.40 16 15 C 0.17 6.48 2.84 44.99 0.13 6.60 16 16 H 0.04 1.61 7.56 -2.38 -0.02 1.60 16 17 C -0.15 -5.19 9.49 71.98 0.68 -4.50 16 18 N -0.74 -38.89 4.49 -322.94 -1.45 -40.34 16 19 C -0.31 -18.69 9.93 84.03 0.83 -17.85 16 20 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 21 C -0.11 -6.94 5.50 84.86 0.47 -6.48 16 22 N -0.98 -66.04 13.70 21.65 0.30 -65.74 16 23 Si 1.12 56.65 29.92 68.60 2.05 58.70 16 24 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 27 C -0.10 -2.13 9.54 22.54 0.21 -1.92 16 28 C -0.10 -1.60 9.67 22.21 0.21 -1.38 16 29 C -0.08 -1.41 5.90 -19.69 -0.12 -1.52 16 30 C -0.12 -0.77 9.44 71.23 0.67 -0.10 16 31 H 0.12 0.28 7.92 -2.38 -0.02 0.26 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.43 3.53 7.22 -92.71 -0.67 2.87 16 35 H 0.11 5.07 5.38 -2.91 -0.02 5.05 16 36 H 0.41 9.95 6.63 -92.71 -0.61 9.33 16 37 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.36 19.81 6.63 -92.71 -0.61 19.20 16 46 H 0.24 16.31 6.77 -92.71 -0.63 15.68 16 47 H 0.15 2.45 6.40 -2.91 -0.02 2.43 16 48 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 49 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.08 0.36 6.96 -2.39 -0.02 0.34 16 51 H 0.10 0.33 8.08 -2.38 -0.02 0.31 16 Total: -1.00 -100.79 416.13 2.96 -97.82 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -0.79 Total: 41.09 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.43 Total: 0.17 kcal Atomic # 7 Polarization: -139.95 SS G_CDS: -4.62 Total: -144.58 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.11 Total: -53.21 kcal Atomic # 14 Polarization: 56.65 SS G_CDS: 2.05 Total: 58.70 kcal Total: -100.79 2.96 -97.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134422196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.026 kcal (2) G-P(sol) polarization free energy of solvation -100.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds